VTK
 All Classes Namespaces Files Functions Variables Typedefs Enumerations Enumerator Friends Macros Pages
Public Types | Public Member Functions | Static Public Member Functions | Protected Member Functions | List of all members
vtkCorrelativeStatisticsGnuR Class Reference

A class for bivariate linear correlation using R to calculate the p-values. More...

#include <vtkCorrelativeStatisticsGnuR.h>

Inheritance diagram for vtkCorrelativeStatisticsGnuR:
[legend]
Collaboration diagram for vtkCorrelativeStatisticsGnuR:
[legend]

Public Types

typedef vtkCorrelativeStatistics Superclass
 
- Public Types inherited from vtkCorrelativeStatistics
typedef vtkStatisticsAlgorithm Superclass
 
- Public Types inherited from vtkStatisticsAlgorithm
typedef vtkTableAlgorithm Superclass
 
enum  InputPorts { INPUT_DATA = 0, LEARN_PARAMETERS = 1, INPUT_MODEL = 2 }
 
enum  OutputIndices { OUTPUT_DATA = 0, OUTPUT_MODEL = 1, ASSESSMENT = 2, OUTPUT_TEST = 2 }
 

Public Member Functions

virtual int IsA (const char *type)
 
vtkCorrelativeStatisticsGnuRNewInstance () const
 
void PrintSelf (ostream &os, vtkIndent indent)
 
- Public Member Functions inherited from vtkCorrelativeStatistics
vtkCorrelativeStatisticsNewInstance () const
 
void PrintSelf (ostream &os, vtkIndent indent)
 
virtual void Aggregate (vtkDataObjectCollection *, vtkMultiBlockDataSet *)
 
- Public Member Functions inherited from vtkStatisticsAlgorithm
vtkStatisticsAlgorithmNewInstance () const
 
void PrintSelf (ostream &os, vtkIndent indent)
 
virtual void SetColumnStatus (const char *namCol, int status)
 
virtual void ResetAllColumnStates ()
 
virtual int RequestSelectedColumns ()
 
virtual void ResetRequests ()
 
virtual vtkIdType GetNumberOfRequests ()
 
virtual vtkIdType GetNumberOfColumnsForRequest (vtkIdType request)
 
void AddColumn (const char *namCol)
 
void AddColumnPair (const char *namColX, const char *namColY)
 
virtual void SetLearnOptionParameterConnection (vtkAlgorithmOutput *params)
 
virtual void SetLearnOptionParameters (vtkDataObject *params)
 
virtual void SetInputModelConnection (vtkAlgorithmOutput *model)
 
virtual void SetInputModel (vtkDataObject *model)
 
virtual void SetLearnOption (bool)
 
virtual bool GetLearnOption ()
 
virtual void SetDeriveOption (bool)
 
virtual bool GetDeriveOption ()
 
virtual void SetAssessOption (bool)
 
virtual bool GetAssessOption ()
 
virtual void SetTestOption (bool)
 
virtual bool GetTestOption ()
 
virtual void SetNumberOfPrimaryTables (vtkIdType)
 
virtual vtkIdType GetNumberOfPrimaryTables ()
 
virtual void SetAssessNames (vtkStringArray *)
 
virtual vtkStringArray * GetAssessNames ()
 
virtual const char * GetColumnForRequest (vtkIdType r, vtkIdType c)
 
virtual int GetColumnForRequest (vtkIdType r, vtkIdType c, vtkStdString &columnName)
 
virtual bool SetParameter (const char *parameter, int index, vtkVariant value)
 

Static Public Member Functions

static int IsTypeOf (const char *type)
 
static
vtkCorrelativeStatisticsGnuR
SafeDownCast (vtkObjectBase *o)
 
static
vtkCorrelativeStatisticsGnuR
New ()
 
- Static Public Member Functions inherited from vtkCorrelativeStatistics
static int IsTypeOf (const char *type)
 
static vtkCorrelativeStatisticsSafeDownCast (vtkObjectBase *o)
 
static vtkCorrelativeStatisticsNew ()
 
- Static Public Member Functions inherited from vtkStatisticsAlgorithm
static int IsTypeOf (const char *type)
 
static vtkStatisticsAlgorithmSafeDownCast (vtkObjectBase *o)
 

Protected Member Functions

virtual vtkObjectBase * NewInstanceInternal () const
 
 vtkCorrelativeStatisticsGnuR ()
 
 ~vtkCorrelativeStatisticsGnuR ()
 
virtual vtkDoubleArray * CalculatePValues (vtkDoubleArray *)
 
- Protected Member Functions inherited from vtkCorrelativeStatistics
 vtkCorrelativeStatistics ()
 
 ~vtkCorrelativeStatistics ()
 
virtual void Derive (vtkMultiBlockDataSet *)
 
virtual void Learn (vtkTable *, vtkTable *, vtkMultiBlockDataSet *)
 
virtual void Test (vtkTable *, vtkMultiBlockDataSet *, vtkTable *)
 
virtual void Assess (vtkTable *inData, vtkMultiBlockDataSet *inMeta, vtkTable *outData)
 
virtual void SelectAssessFunctor (vtkTable *outData, vtkDataObject *inMeta, vtkStringArray *rowNames, AssessFunctor *&dfunc)
 
- Protected Member Functions inherited from vtkStatisticsAlgorithm
 vtkStatisticsAlgorithm ()
 
 ~vtkStatisticsAlgorithm ()
 
virtual int FillInputPortInformation (int port, vtkInformation *info)
 
virtual int FillOutputPortInformation (int port, vtkInformation *info)
 
virtual int RequestData (vtkInformation *, vtkInformationVector **, vtkInformationVector *)
 
void Assess (vtkTable *, vtkMultiBlockDataSet *, vtkTable *, int)
 

Additional Inherited Members

- Protected Attributes inherited from vtkStatisticsAlgorithm
int NumberOfPrimaryTables
 
bool LearnOption
 
bool DeriveOption
 
bool AssessOption
 
bool TestOption
 
vtkStringArray * AssessNames
 
vtkStatisticsAlgorithmPrivateInternals
 

Detailed Description

A class for bivariate linear correlation using R to calculate the p-values.

Given a selection of pairs of columns of interest, this class provides the following functionalities, depending on the chosen execution options: Learn: calculate extremal values, sample mean, and M2 aggregates (cf. P. Pebay, Formulas for robust, one-pass parallel computation of covariances and Arbitrary-Order Statistical Moments, Sandia Report SAND2008-6212, Sep 2008, http://infoserve.sandia.gov/sand_doc/2008/086212.pdf for details) Derive: calculate unbiased covariance matrix estimators and its determinant, linear regressions, and Pearson correlation coefficient. Assess: given an input data set, two means and a 2x2 covariance matrix, mark each datum with corresponding relative deviation (2-dimensional Mahlanobis distance). Test: Perform Jarque-Bera-Srivastava test of 2-d normality

Thanks:
Thanks to Philippe Pebay and David Thompson from Sandia National Laboratories for implementing this class. Updated by Philippe Pebay, Kitware SAS 2012

Definition at line 52 of file vtkCorrelativeStatisticsGnuR.h.

Member Typedef Documentation

Definition at line 55 of file vtkCorrelativeStatisticsGnuR.h.

Constructor & Destructor Documentation

vtkCorrelativeStatisticsGnuR::vtkCorrelativeStatisticsGnuR ( )
protected
vtkCorrelativeStatisticsGnuR::~vtkCorrelativeStatisticsGnuR ( )
protected

Member Function Documentation

static int vtkCorrelativeStatisticsGnuR::IsTypeOf ( const char *  type)
static
virtual int vtkCorrelativeStatisticsGnuR::IsA ( const char *  type)
virtual

Reimplemented from vtkCorrelativeStatistics.

static vtkCorrelativeStatisticsGnuR* vtkCorrelativeStatisticsGnuR::SafeDownCast ( vtkObjectBase *  o)
static
virtual vtkObjectBase* vtkCorrelativeStatisticsGnuR::NewInstanceInternal ( ) const
protectedvirtual

Reimplemented from vtkCorrelativeStatistics.

vtkCorrelativeStatisticsGnuR* vtkCorrelativeStatisticsGnuR::NewInstance ( ) const
void vtkCorrelativeStatisticsGnuR::PrintSelf ( ostream &  os,
vtkIndent  indent 
)
static vtkCorrelativeStatisticsGnuR* vtkCorrelativeStatisticsGnuR::New ( )
static
virtual vtkDoubleArray* vtkCorrelativeStatisticsGnuR::CalculatePValues ( vtkDoubleArray *  )
protectedvirtual

Calculate p-value. This will be overridden using the object factory with an R implementation if R is present.

Reimplemented from vtkCorrelativeStatistics.


The documentation for this class was generated from the following file: