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vtkPPCAStatistics Class Reference

A class for parallel principal component analysis. More...

#include <vtkPPCAStatistics.h>

Inheritance diagram for vtkPPCAStatistics:
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Collaboration diagram for vtkPPCAStatistics:
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Public Types

typedef vtkPCAStatistics Superclass
 
- Public Types inherited from vtkPCAStatistics
typedef vtkMultiCorrelativeStatistics Superclass
 
enum  NormalizationType {
  NONE, TRIANGLE_SPECIFIED, DIAGONAL_SPECIFIED, DIAGONAL_VARIANCE,
  NUM_NORMALIZATION_SCHEMES
}
 
enum  ProjectionType { FULL_BASIS, FIXED_BASIS_SIZE, FIXED_BASIS_ENERGY, NUM_BASIS_SCHEMES }
 
- Public Types inherited from vtkMultiCorrelativeStatistics
typedef vtkStatisticsAlgorithm Superclass
 
- Public Types inherited from vtkStatisticsAlgorithm
typedef vtkTableAlgorithm Superclass
 
enum  InputPorts { INPUT_DATA = 0, LEARN_PARAMETERS = 1, INPUT_MODEL = 2 }
 
enum  OutputIndices { OUTPUT_DATA = 0, OUTPUT_MODEL = 1, ASSESSMENT = 2, OUTPUT_TEST = 2 }
 
- Public Types inherited from vtkTableAlgorithm
typedef vtkAlgorithm Superclass
 
- Public Types inherited from vtkAlgorithm
typedef vtkObject Superclass
 
- Public Types inherited from vtkObject
typedef vtkObjectBase Superclass
 

Public Member Functions

virtual const char * GetClassName ()
 
virtual int IsA (const char *type)
 
void PrintSelf (ostream &os, vtkIndent indent)
 
virtual void SetController (vtkMultiProcessController *)
 
virtual vtkMultiProcessControllerGetController ()
 
- Public Member Functions inherited from vtkPCAStatistics
virtual void SetNormalizationScheme (int)
 
virtual int GetNormalizationScheme ()
 
virtual void SetNormalizationSchemeByName (const char *sname)
 
virtual const char * GetNormalizationSchemeName (int scheme)
 
virtual vtkTableGetSpecifiedNormalization ()
 
virtual void SetSpecifiedNormalization (vtkTable *)
 
void GetEigenvalues (int request, vtkDoubleArray *)
 
void GetEigenvalues (vtkDoubleArray *)
 
double GetEigenvalue (int request, int i)
 
double GetEigenvalue (int i)
 
void GetEigenvectors (int request, vtkDoubleArray *eigenvectors)
 
void GetEigenvectors (vtkDoubleArray *eigenvectors)
 
void GetEigenvector (int i, vtkDoubleArray *eigenvector)
 
void GetEigenvector (int request, int i, vtkDoubleArray *eigenvector)
 
virtual void SetBasisScheme (int)
 
virtual int GetBasisScheme ()
 
virtual const char * GetBasisSchemeName (int schemeIndex)
 
virtual void SetBasisSchemeByName (const char *schemeName)
 
virtual void SetFixedBasisSize (int)
 
virtual int GetFixedBasisSize ()
 
virtual void SetFixedBasisEnergy (double)
 
virtual double GetFixedBasisEnergy ()
 
virtual bool SetParameter (const char *parameter, int index, vtkVariant value)
 
- Public Member Functions inherited from vtkMultiCorrelativeStatistics
virtual void Aggregate (vtkDataObjectCollection *, vtkMultiBlockDataSet *)
 
- Public Member Functions inherited from vtkStatisticsAlgorithm
void PrintSelf (ostream &os, vtkIndent indent)
 
void SetAssessOptionParameter (vtkIdType id, vtkStdString name)
 
vtkStdString GetAssessParameter (vtkIdType id)
 
virtual void SetColumnStatus (const char *namCol, int status)
 
virtual void ResetAllColumnStates ()
 
virtual int RequestSelectedColumns ()
 
virtual void ResetRequests ()
 
virtual vtkIdType GetNumberOfRequests ()
 
virtual vtkIdType GetNumberOfColumnsForRequest (vtkIdType request)
 
virtual void SetLearnOptionParameterConnection (vtkAlgorithmOutput *params)
 
virtual void SetLearnOptionParameters (vtkDataObject *params)
 
virtual void SetInputModelConnection (vtkAlgorithmOutput *model)
 
virtual void SetInputModel (vtkDataObject *model)
 
virtual void SetLearnOption (bool)
 
virtual bool GetLearnOption ()
 
virtual void SetDeriveOption (bool)
 
virtual bool GetDeriveOption ()
 
virtual void SetAssessOption (bool)
 
virtual bool GetAssessOption ()
 
virtual void SetTestOption (bool)
 
virtual bool GetTestOption ()
 
virtual void SetNumberOfPrimaryTables (vtkIdType)
 
virtual vtkIdType GetNumberOfPrimaryTables ()
 
virtual void SetAssessParameters (vtkStringArray *)
 
virtual vtkStringArrayGetAssessParameters ()
 
virtual void SetAssessNames (vtkStringArray *)
 
virtual vtkStringArrayGetAssessNames ()
 
virtual const char * GetColumnForRequest (vtkIdType r, vtkIdType c)
 
virtual int GetColumnForRequest (vtkIdType r, vtkIdType c, vtkStdString &columnName)
 
- Public Member Functions inherited from vtkTableAlgorithm
virtual int ProcessRequest (vtkInformation *, vtkInformationVector **, vtkInformationVector *)
 
vtkTableGetOutput ()
 
vtkTableGetOutput (int index)
 
void SetInput (vtkDataObject *obj)
 
void SetInput (int index, vtkDataObject *obj)
 
- Public Member Functions inherited from vtkAlgorithm
int HasExecutive ()
 
vtkExecutiveGetExecutive ()
 
virtual void SetExecutive (vtkExecutive *executive)
 
virtual int ModifyRequest (vtkInformation *request, int when)
 
vtkInformationGetInputPortInformation (int port)
 
vtkInformationGetOutputPortInformation (int port)
 
int GetNumberOfInputPorts ()
 
int GetNumberOfOutputPorts ()
 
void UpdateProgress (double amount)
 
vtkInformationGetInputArrayInformation (int idx)
 
void RemoveAllInputs ()
 
vtkDataObjectGetOutputDataObject (int port)
 
virtual void RemoveInputConnection (int port, vtkAlgorithmOutput *input)
 
int GetNumberOfInputConnections (int port)
 
int GetTotalNumberOfInputConnections ()
 
vtkAlgorithmOutputGetInputConnection (int port, int index)
 
virtual void Update ()
 
virtual void UpdateInformation ()
 
virtual void UpdateWholeExtent ()
 
void ConvertTotalInputToPortConnection (int ind, int &port, int &conn)
 
virtual double ComputePriority ()
 
int ProcessRequest (vtkInformation *request, vtkCollection *inInfo, vtkInformationVector *outInfo)
 
virtual int ComputePipelineMTime (vtkInformation *request, vtkInformationVector **inInfoVec, vtkInformationVector *outInfoVec, int requestFromOutputPort, unsigned long *mtime)
 
virtual vtkInformationGetInformation ()
 
virtual void SetInformation (vtkInformation *)
 
virtual void Register (vtkObjectBase *o)
 
virtual void UnRegister (vtkObjectBase *o)
 
virtual void SetAbortExecute (int)
 
virtual int GetAbortExecute ()
 
virtual void AbortExecuteOn ()
 
virtual void AbortExecuteOff ()
 
virtual void SetProgress (double)
 
virtual double GetProgress ()
 
void SetProgressText (const char *ptext)
 
virtual char * GetProgressText ()
 
virtual unsigned long GetErrorCode ()
 
virtual void SetInputArrayToProcess (int idx, int port, int connection, int fieldAssociation, const char *name)
 
virtual void SetInputArrayToProcess (int idx, int port, int connection, int fieldAssociation, int fieldAttributeType)
 
virtual void SetInputArrayToProcess (int idx, vtkInformation *info)
 
virtual void SetInputArrayToProcess (int idx, int port, int connection, const char *fieldAssociation, const char *attributeTypeorName)
 
vtkDataObjectGetInputDataObject (int port, int connection)
 
virtual void SetInputConnection (int port, vtkAlgorithmOutput *input)
 
virtual void SetInputConnection (vtkAlgorithmOutput *input)
 
virtual void AddInputConnection (int port, vtkAlgorithmOutput *input)
 
virtual void AddInputConnection (vtkAlgorithmOutput *input)
 
vtkAlgorithmOutputGetOutputPort (int index)
 
vtkAlgorithmOutputGetOutputPort ()
 
virtual void SetReleaseDataFlag (int)
 
virtual int GetReleaseDataFlag ()
 
void ReleaseDataFlagOn ()
 
void ReleaseDataFlagOff ()
 
int UpdateExtentIsEmpty (vtkDataObject *output)
 
int UpdateExtentIsEmpty (vtkInformation *pinfo, int extentType)
 
- Public Member Functions inherited from vtkObject
virtual void DebugOn ()
 
virtual void DebugOff ()
 
unsigned char GetDebug ()
 
void SetDebug (unsigned char debugFlag)
 
virtual void Modified ()
 
virtual unsigned long GetMTime ()
 
unsigned long AddObserver (unsigned long event, vtkCommand *, float priority=0.0f)
 
unsigned long AddObserver (const char *event, vtkCommand *, float priority=0.0f)
 
vtkCommandGetCommand (unsigned long tag)
 
void RemoveObserver (vtkCommand *)
 
void RemoveObservers (unsigned long event, vtkCommand *)
 
void RemoveObservers (const char *event, vtkCommand *)
 
int HasObserver (unsigned long event, vtkCommand *)
 
int HasObserver (const char *event, vtkCommand *)
 
void RemoveObserver (unsigned long tag)
 
void RemoveObservers (unsigned long event)
 
void RemoveObservers (const char *event)
 
void RemoveAllObservers ()
 
int HasObserver (unsigned long event)
 
int HasObserver (const char *event)
 
template<class U , class T >
unsigned long AddObserver (unsigned long event, U observer, void(T::*callback)(), float priority=0.0f)
 
template<class U , class T >
unsigned long AddObserver (unsigned long event, U observer, void(T::*callback)(vtkObject *, unsigned long, void *), float priority=0.0f)
 
int InvokeEvent (unsigned long event, void *callData)
 
int InvokeEvent (const char *event, void *callData)
 
int InvokeEvent (unsigned long event)
 
int InvokeEvent (const char *event)
 
- Public Member Functions inherited from vtkObjectBase
const char * GetClassName () const
 
virtual void Delete ()
 
virtual void FastDelete ()
 
void Print (ostream &os)
 
void SetReferenceCount (int)
 
void PrintRevisions (ostream &os)
 
virtual void PrintHeader (ostream &os, vtkIndent indent)
 
virtual void PrintTrailer (ostream &os, vtkIndent indent)
 
int GetReferenceCount ()
 

Static Public Member Functions

static int IsTypeOf (const char *type)
 
static vtkPPCAStatisticsSafeDownCast (vtkObject *o)
 
static vtkPPCAStatisticsNew ()
 
- Static Public Member Functions inherited from vtkPCAStatistics
static int IsTypeOf (const char *type)
 
static vtkPCAStatisticsSafeDownCast (vtkObject *o)
 
static vtkPCAStatisticsNew ()
 
- Static Public Member Functions inherited from vtkMultiCorrelativeStatistics
static int IsTypeOf (const char *type)
 
static vtkMultiCorrelativeStatisticsSafeDownCast (vtkObject *o)
 
static vtkMultiCorrelativeStatisticsNew ()
 
- Static Public Member Functions inherited from vtkStatisticsAlgorithm
static int IsTypeOf (const char *type)
 
static vtkStatisticsAlgorithmSafeDownCast (vtkObject *o)
 
- Static Public Member Functions inherited from vtkTableAlgorithm
static vtkTableAlgorithmNew ()
 
static int IsTypeOf (const char *type)
 
static vtkTableAlgorithmSafeDownCast (vtkObject *o)
 
- Static Public Member Functions inherited from vtkAlgorithm
static vtkAlgorithmNew ()
 
static int IsTypeOf (const char *type)
 
static vtkAlgorithmSafeDownCast (vtkObject *o)
 
static void SetDefaultExecutivePrototype (vtkExecutive *proto)
 
static vtkInformationIntegerKeyINPUT_IS_OPTIONAL ()
 
static vtkInformationIntegerKeyINPUT_IS_REPEATABLE ()
 
static vtkInformationInformationVectorKeyINPUT_REQUIRED_FIELDS ()
 
static vtkInformationStringVectorKeyINPUT_REQUIRED_DATA_TYPE ()
 
static vtkInformationInformationVectorKeyINPUT_ARRAYS_TO_PROCESS ()
 
static vtkInformationIntegerKeyINPUT_PORT ()
 
static vtkInformationIntegerKeyINPUT_CONNECTION ()
 
static vtkInformationIntegerKeyPRESERVES_DATASET ()
 
static vtkInformationIntegerKeyPRESERVES_GEOMETRY ()
 
static vtkInformationIntegerKeyPRESERVES_BOUNDS ()
 
static vtkInformationIntegerKeyPRESERVES_TOPOLOGY ()
 
static vtkInformationIntegerKeyPRESERVES_ATTRIBUTES ()
 
static vtkInformationIntegerKeyPRESERVES_RANGES ()
 
- Static Public Member Functions inherited from vtkObject
static int IsTypeOf (const char *type)
 
static vtkObjectSafeDownCast (vtkObject *o)
 
static vtkObjectNew ()
 
static void BreakOnError ()
 
static void SetGlobalWarningDisplay (int val)
 
static void GlobalWarningDisplayOn ()
 
static void GlobalWarningDisplayOff ()
 
static int GetGlobalWarningDisplay ()
 
- Static Public Member Functions inherited from vtkObjectBase
static int IsTypeOf (const char *name)
 
static vtkObjectBaseNew ()
 

Protected Member Functions

 vtkPPCAStatistics ()
 
 ~vtkPPCAStatistics ()
 
virtual void Learn (vtkTable *inData, vtkTable *inParameters, vtkMultiBlockDataSet *outMeta)
 
- Protected Member Functions inherited from vtkPCAStatistics
 vtkPCAStatistics ()
 
 ~vtkPCAStatistics ()
 
virtual int FillInputPortInformation (int port, vtkInformation *info)
 
virtual void Derive (vtkMultiBlockDataSet *inMeta)
 
virtual void Test (vtkTable *, vtkMultiBlockDataSet *, vtkTable *)
 
virtual void Assess (vtkTable *, vtkMultiBlockDataSet *, vtkTable *)
 
virtual void SelectAssessFunctor (vtkTable *inData, vtkDataObject *inMeta, vtkStringArray *rowNames, AssessFunctor *&dfunc)
 
- Protected Member Functions inherited from vtkMultiCorrelativeStatistics
 vtkMultiCorrelativeStatistics ()
 
 ~vtkMultiCorrelativeStatistics ()
 
- Protected Member Functions inherited from vtkStatisticsAlgorithm
 vtkStatisticsAlgorithm ()
 
 ~vtkStatisticsAlgorithm ()
 
virtual int FillOutputPortInformation (int port, vtkInformation *info)
 
virtual int RequestData (vtkInformation *, vtkInformationVector **, vtkInformationVector *)
 
- Protected Member Functions inherited from vtkTableAlgorithm
 vtkTableAlgorithm ()
 
 ~vtkTableAlgorithm ()
 
virtual int RequestInformation (vtkInformation *request, vtkInformationVector **inputVector, vtkInformationVector *outputVector)
 
virtual int RequestUpdateExtent (vtkInformation *, vtkInformationVector **, vtkInformationVector *)
 
- Protected Member Functions inherited from vtkAlgorithm
 vtkAlgorithm ()
 
 ~vtkAlgorithm ()
 
virtual void SetNumberOfInputPorts (int n)
 
virtual void SetNumberOfOutputPorts (int n)
 
int InputPortIndexInRange (int index, const char *action)
 
int OutputPortIndexInRange (int index, const char *action)
 
int GetInputArrayAssociation (int idx, vtkInformationVector **inputVector)
 
virtual vtkExecutiveCreateDefaultExecutive ()
 
virtual void ReportReferences (vtkGarbageCollector *)
 
virtual void SetNumberOfInputConnections (int port, int n)
 
int GetInputArrayAssociation (int idx, int connection, vtkInformationVector **inputVector)
 
int GetInputArrayAssociation (int idx, vtkDataObject *input)
 
vtkDataArrayGetInputArrayToProcess (int idx, vtkInformationVector **inputVector)
 
vtkDataArrayGetInputArrayToProcess (int idx, vtkInformationVector **inputVector, int &association)
 
vtkDataArrayGetInputArrayToProcess (int idx, int connection, vtkInformationVector **inputVector)
 
vtkDataArrayGetInputArrayToProcess (int idx, int connection, vtkInformationVector **inputVector, int &association)
 
vtkDataArrayGetInputArrayToProcess (int idx, vtkDataObject *input)
 
vtkDataArrayGetInputArrayToProcess (int idx, vtkDataObject *input, int &association)
 
vtkAbstractArrayGetInputAbstractArrayToProcess (int idx, vtkInformationVector **inputVector)
 
vtkAbstractArrayGetInputAbstractArrayToProcess (int idx, vtkInformationVector **inputVector, int &association)
 
vtkAbstractArrayGetInputAbstractArrayToProcess (int idx, int connection, vtkInformationVector **inputVector)
 
vtkAbstractArrayGetInputAbstractArrayToProcess (int idx, int connection, vtkInformationVector **inputVector, int &association)
 
vtkAbstractArrayGetInputAbstractArrayToProcess (int idx, vtkDataObject *input)
 
vtkAbstractArrayGetInputAbstractArrayToProcess (int idx, vtkDataObject *input, int &association)
 
vtkInformationGetInputArrayFieldInformation (int idx, vtkInformationVector **inputVector)
 
virtual void SetNthInputConnection (int port, int index, vtkAlgorithmOutput *input)
 
virtual void SetErrorCode (unsigned long)
 
- Protected Member Functions inherited from vtkObject
 vtkObject ()
 
virtual ~vtkObject ()
 
virtual void RegisterInternal (vtkObjectBase *, int check)
 
virtual void UnRegisterInternal (vtkObjectBase *, int check)
 
void InternalGrabFocus (vtkCommand *mouseEvents, vtkCommand *keypressEvents=NULL)
 
void InternalReleaseFocus ()
 
- Protected Member Functions inherited from vtkObjectBase
 vtkObjectBase ()
 
virtual ~vtkObjectBase ()
 
virtual void CollectRevisions (ostream &os)
 
 vtkObjectBase (const vtkObjectBase &)
 
void operator= (const vtkObjectBase &)
 

Protected Attributes

vtkMultiProcessControllerController
 
- Protected Attributes inherited from vtkPCAStatistics
int NormalizationScheme
 
int BasisScheme
 
int FixedBasisSize
 
double FixedBasisEnergy
 
- Protected Attributes inherited from vtkStatisticsAlgorithm
int NumberOfPrimaryTables
 
bool LearnOption
 
bool DeriveOption
 
bool AssessOption
 
bool TestOption
 
vtkStringArrayAssessParameters
 
vtkStringArrayAssessNames
 
vtkStatisticsAlgorithmPrivateInternals
 
- Protected Attributes inherited from vtkAlgorithm
vtkInformationInformation
 
double Progress
 
char * ProgressText
 
unsigned long ErrorCode
 
- Protected Attributes inherited from vtkObject
unsigned char Debug
 
vtkTimeStamp MTime
 
vtkSubjectHelper * SubjectHelper
 
- Protected Attributes inherited from vtkObjectBase
int ReferenceCount
 
vtkWeakPointerBase ** WeakPointers
 

Additional Inherited Members

- Public Attributes inherited from vtkAlgorithm
int AbortExecute
 
- Static Protected Member Functions inherited from vtkAlgorithm
static vtkInformationIntegerKeyPORT_REQUIREMENTS_FILLED ()
 
- Static Protected Attributes inherited from vtkPCAStatistics
static const char * BasisSchemeEnumNames [NUM_BASIS_SCHEMES+1]
 
static const char * NormalizationSchemeEnumNames [NUM_NORMALIZATION_SCHEMES+1]
 
- Static Protected Attributes inherited from vtkAlgorithm
static vtkExecutiveDefaultExecutivePrototype
 

Detailed Description

A class for parallel principal component analysis.

vtkPPCAStatistics is vtkPCAStatistics subclass for parallel datasets. It learns and derives the global statistical model on each node, but assesses each individual data points on the node that owns it.

Thanks:
Thanks to Philippe Pebay, David Thompson and Janine Bennett from Sandia National Laboratories for implementing this class.
Tests:
vtkPPCAStatistics (Tests)

Definition at line 37 of file vtkPPCAStatistics.h.

Member Typedef Documentation

Definition at line 40 of file vtkPPCAStatistics.h.

Constructor & Destructor Documentation

vtkPPCAStatistics::vtkPPCAStatistics ( )
protected
vtkPPCAStatistics::~vtkPPCAStatistics ( )
protected

Member Function Documentation

virtual const char* vtkPPCAStatistics::GetClassName ( )
virtual

Reimplemented from vtkPCAStatistics.

static int vtkPPCAStatistics::IsTypeOf ( const char *  type)
static
virtual int vtkPPCAStatistics::IsA ( const char *  name)
virtual

Return 1 if this class is the same type of (or a subclass of) the named class. Returns 0 otherwise. This method works in combination with vtkTypeMacro found in vtkSetGet.h.

Reimplemented from vtkPCAStatistics.

static vtkPPCAStatistics* vtkPPCAStatistics::SafeDownCast ( vtkObject o)
static
void vtkPPCAStatistics::PrintSelf ( ostream &  os,
vtkIndent  indent 
)
virtual

Methods invoked by print to print information about the object including superclasses. Typically not called by the user (use Print() instead) but used in the hierarchical print process to combine the output of several classes.

Reimplemented from vtkPCAStatistics.

static vtkPPCAStatistics* vtkPPCAStatistics::New ( )
static
virtual void vtkPPCAStatistics::SetController ( vtkMultiProcessController )
virtual

Get/Set the multiprocess controller. If no controller is set, single process is assumed.

virtual vtkMultiProcessController* vtkPPCAStatistics::GetController ( )
virtual

Get/Set the multiprocess controller. If no controller is set, single process is assumed.

virtual void vtkPPCAStatistics::Learn ( vtkTable inData,
vtkTable inParameters,
vtkMultiBlockDataSet outMeta 
)
protectedvirtual

Execute the calculations required by the Learn option.

Reimplemented from vtkMultiCorrelativeStatistics.

Member Data Documentation

vtkMultiProcessController* vtkPPCAStatistics::Controller
protected

Definition at line 56 of file vtkPPCAStatistics.h.


The documentation for this class was generated from the following file: