Snakemake
5.22.1

Getting started

  • Installation
  • Snakemake Tutorial
  • Short tutorial
  • Snakemake Executor Tutorials

Executing workflows

  • Command line interface
  • Cluster Execution
  • Cloud execution
  • Between workflow caching
  • Interoperability

Defining workflows

  • Writing Workflows
  • Rules
  • Configuration
  • Modularization
  • Remote files
  • Utils
  • Distribution and Reproducibility
  • Reports

API Reference

  • The Snakemake API
  • Additional utils
  • Internal API

Project Info

  • Citing and Citations
  • More Resources
  • Frequently Asked Questions
  • Contributing
  • Credits
  • Change Log
  • License
Snakemake
  • Docs »
  • Overview: module code

All modules for which code is available

  • snakemake
    • snakemake.benchmark
    • snakemake.checkpoints
    • snakemake.common
    • snakemake.cwl
    • snakemake.dag
    • snakemake.decorators
    • snakemake.exceptions
    • snakemake.executors
    • snakemake.gui
    • snakemake.io
    • snakemake.jobs
    • snakemake.logging
    • snakemake.output_index
    • snakemake.parser
    • snakemake.persistence
    • snakemake.remote
      • snakemake.remote.EGA
      • snakemake.remote.HTTP
      • snakemake.remote.NCBI
      • snakemake.remote.S3
      • snakemake.remote.dropbox
    • snakemake.report
    • snakemake.rules
    • snakemake.scheduler
    • snakemake.script
    • snakemake.shell
    • snakemake.stats
    • snakemake.utils
    • snakemake.workflow
    • snakemake.wrapper

© Copyright 2014-2020, Johannes Koester

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