Snakemake
5.22.1

Getting started

  • Installation
  • Snakemake Tutorial
  • Short tutorial
  • Snakemake Executor Tutorials

Executing workflows

  • Command line interface
  • Cluster Execution
  • Cloud execution
  • Between workflow caching
  • Interoperability

Defining workflows

  • Writing Workflows
  • Rules
  • Configuration
  • Modularization
  • Remote files
  • Utils
  • Distribution and Reproducibility
  • Reports

API Reference

  • The Snakemake API
  • Additional utils
  • Internal API

Project Info

  • Citing and Citations
  • More Resources
  • Frequently Asked Questions
  • Contributing
  • Credits
  • Change Log
  • License
Snakemake
  • Docs »
  • Search


© Copyright 2014-2020, Johannes Koester

Built with Sphinx using a theme provided by Read the Docs.