Snakemake
5.22.1

Getting started

  • Installation
  • Snakemake Tutorial
  • Short tutorial
  • Snakemake Executor Tutorials

Executing workflows

  • Command line interface
  • Cluster Execution
  • Cloud execution
  • Between workflow caching
  • Interoperability

Defining workflows

  • Writing Workflows
  • Rules
  • Configuration
  • Modularization
  • Remote files
  • Utils
  • Distribution and Reproducibility
  • Reports

API Reference

  • The Snakemake API
  • Additional utils
  • Internal API

Project Info

  • Citing and Citations
  • More Resources
  • Frequently Asked Questions
  • Contributing
  • Credits
  • Change Log
  • License
Snakemake
  • Docs »
  • Python Module Index

Python Module Index

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- snakemake
    snakemake.benchmark
    snakemake.checkpoints
    snakemake.common
    snakemake.cwl
    snakemake.dag
    snakemake.decorators
    snakemake.exceptions
    snakemake.executors
    snakemake.gui
    snakemake.io
    snakemake.jobs
    snakemake.logging
    snakemake.output_index
    snakemake.parser
    snakemake.persistence
    snakemake.remote
    snakemake.remote.dropbox
    snakemake.remote.EGA
    snakemake.remote.HTTP
    snakemake.remote.NCBI
    snakemake.remote.S3
    snakemake.report
    snakemake.rules
    snakemake.scheduler
    snakemake.script
    snakemake.shell
    snakemake.stats
    snakemake.utils
    snakemake.workflow
    snakemake.wrapper

© Copyright 2014-2020, Johannes Koester

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