Snakemake
3.9.1

Installation

  • Installation
  • Examples

Tutorial

  • Tutorial Setup
  • Basics: An example workflow
  • Advanced: Decorating the example workflow
  • Additional features

Executing workflows

  • The Snakemake Executable

Defining workflows

  • Writing Workflows
  • Rules
  • Configuration
  • Modularization
  • Remote files
  • Utils
  • Workflow Distribution and Deployment

API Reference

  • The Snakemake API
  • Additional utils

Project Info

  • Citing and Citations
  • More Resources
  • Frequently Asked Questions
  • Contributing
  • Credits
  • Change Log
  • License
Snakemake
  • Docs »
  • Index

Index

A | F | L | M | Q | R | S | U

A

AlwaysQuotedFormatter (class in snakemake.utils)
available_cpu_count() (in module snakemake.utils)

F

format() (in module snakemake.utils)
format_element() (snakemake.utils.SequenceFormatter method)

L

linecount() (in module snakemake.utils)
listfiles() (in module snakemake.utils)

M

makedirs() (in module snakemake.utils)
min_version() (in module snakemake.utils)

Q

QuotedFormatter (class in snakemake.utils)

R

R() (in module snakemake.utils)
read_job_properties() (in module snakemake.utils)
report() (in module snakemake.utils)

S

SequenceFormatter (class in snakemake.utils)
set_protected_output() (in module snakemake.utils)
set_temporary_output() (in module snakemake.utils)
snakemake() (in module snakemake)
snakemake.utils (module)

U

update_config() (in module snakemake.utils)

© Copyright 2014-2017, Johannes Koester.

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