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RDKit
Open-source cheminformatics and machine learning.
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a class for efficiently storing sparse vectors of ints More...
#include <SparseIntVect.h>
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typedef std::map< IndexType, int > | StorageType |
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SparseIntVect () | |
SparseIntVect (IndexType length) | |
initialize with a particular length More... | |
SparseIntVect (const SparseIntVect< IndexType > &other) | |
Copy constructor. More... | |
SparseIntVect (const std::string &pkl) | |
constructor from a pickle More... | |
SparseIntVect (const char *pkl, const unsigned int len) | |
constructor from a pickle More... | |
~SparseIntVect () | |
destructor (doesn't need to do anything) More... | |
int | getVal (IndexType idx) const |
return the value at an index More... | |
void | setVal (IndexType idx, int val) |
set the value at an index More... | |
int | operator[] (IndexType idx) const |
support indexing using [] More... | |
IndexType | getLength () const |
returns the length More... | |
int | getTotalVal (bool doAbs=false) const |
unsigned int | size () const |
returns the length More... | |
const StorageType & | getNonzeroElements () const |
returns our nonzero elements as a map(IndexType->int) More... | |
SparseIntVect< IndexType > & | operator &= (const SparseIntVect< IndexType > &other) |
const SparseIntVect< IndexType > | operator & (const SparseIntVect< IndexType > &other) const |
SparseIntVect< IndexType > & | operator|= (const SparseIntVect< IndexType > &other) |
const SparseIntVect< IndexType > | operator| (const SparseIntVect< IndexType > &other) const |
SparseIntVect< IndexType > & | operator+= (const SparseIntVect< IndexType > &other) |
const SparseIntVect< IndexType > | operator+ (const SparseIntVect< IndexType > &other) const |
SparseIntVect< IndexType > & | operator-= (const SparseIntVect< IndexType > &other) |
const SparseIntVect< IndexType > | operator- (const SparseIntVect< IndexType > &other) const |
SparseIntVect< IndexType > & | operator*= (int v) |
SparseIntVect< IndexType > & | operator* (int v) |
SparseIntVect< IndexType > & | operator/= (int v) |
SparseIntVect< IndexType > & | operator/ (int v) |
SparseIntVect< IndexType > & | operator+= (int v) |
SparseIntVect< IndexType > & | operator+ (int v) |
SparseIntVect< IndexType > & | operator-= (int v) |
SparseIntVect< IndexType > & | operator- (int v) |
bool | operator== (const SparseIntVect< IndexType > &v2) const |
bool | operator!= (const SparseIntVect< IndexType > &v2) const |
std::string | toString () const |
returns a binary string representation (pickle) More... | |
void | fromString (const std::string &txt) |
a class for efficiently storing sparse vectors of ints
Definition at line 28 of file SparseIntVect.h.
typedef std::map<IndexType, int> RDKit::SparseIntVect< IndexType >::StorageType |
Definition at line 30 of file SparseIntVect.h.
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Definition at line 32 of file SparseIntVect.h.
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initialize with a particular length
Definition at line 35 of file SparseIntVect.h.
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Copy constructor.
Definition at line 38 of file SparseIntVect.h.
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constructor from a pickle
Definition at line 44 of file SparseIntVect.h.
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constructor from a pickle
Definition at line 48 of file SparseIntVect.h.
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destructor (doesn't need to do anything)
Definition at line 53 of file SparseIntVect.h.
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Definition at line 346 of file SparseIntVect.h.
References PRECONDITION, and RDKit::streamRead().
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returns the length
Definition at line 99 of file SparseIntVect.h.
Referenced by RDKit::DiceSimilarity(), RDKit::SparseIntVect< IndexType >::size(), RDKit::TverskySimilarity(), and RDKit::updateFromSequence().
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returns our nonzero elements as a map(IndexType->int)
Definition at line 118 of file SparseIntVect.h.
Referenced by RDKit::updateFromSequence().
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returns the sum of all the elements in the vect the doAbs argument toggles summing the absolute values of the elements
Definition at line 103 of file SparseIntVect.h.
Referenced by RDKit::DiceSimilarity().
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return the value at an index
Definition at line 66 of file SparseIntVect.h.
Referenced by RDKit::SparseIntVect< IndexType >::operator[](), and RDKit::updateFromSequence().
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Definition at line 153 of file SparseIntVect.h.
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this is a "fuzzy" intesection, the final value of each element is equal to the minimum from the two vects.
Definition at line 123 of file SparseIntVect.h.
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Definition at line 319 of file SparseIntVect.h.
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Definition at line 272 of file SparseIntVect.h.
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Definition at line 264 of file SparseIntVect.h.
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Definition at line 225 of file SparseIntVect.h.
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Definition at line 296 of file SparseIntVect.h.
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Definition at line 197 of file SparseIntVect.h.
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Definition at line 288 of file SparseIntVect.h.
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Definition at line 259 of file SparseIntVect.h.
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Definition at line 308 of file SparseIntVect.h.
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Definition at line 231 of file SparseIntVect.h.
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Definition at line 300 of file SparseIntVect.h.
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Definition at line 284 of file SparseIntVect.h.
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Definition at line 276 of file SparseIntVect.h.
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Definition at line 313 of file SparseIntVect.h.
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support indexing using []
Definition at line 96 of file SparseIntVect.h.
References RDKit::SparseIntVect< IndexType >::getVal().
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Definition at line 191 of file SparseIntVect.h.
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this is a "fuzzy" union, the final value of each element is equal to the maximum from the two vects.
Definition at line 162 of file SparseIntVect.h.
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set the value at an index
Definition at line 79 of file SparseIntVect.h.
Referenced by RDKit::updateFromSequence().
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returns the length
Definition at line 115 of file SparseIntVect.h.
References RDKit::SparseIntVect< IndexType >::getLength().
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returns a binary string representation (pickle)
Definition at line 324 of file SparseIntVect.h.
References ci_SPARSEINTVECT_VERSION, and RDKit::streamWrite().