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__init__(self,
host=None,
port=9123,
force=0,
**kwargs)
x.__init__(...) initializes x; see help(type(x)) for signature |
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DeleteAll(self)
blows out everything in the viewer |
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DeleteAllExcept(self,
excludes)
deletes everything except the items in the provided list of arguments |
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LoadFile(self,
filename,
name,
showOnly=False)
calls pymol's "load" command on the given filename; the loaded object... |
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ShowMol(self,
mol,
name='molecule',
showOnly=True,
highlightFeatures=[],
molB="",
confId=-1,
zoom=True,
forcePDB=False)
special case for displaying a molecule or mol block |
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GetSelectedAtoms(self,
whichSelection=None)
returns the selected atoms |
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SelectAtoms(self,
itemId,
atomIndices,
selName='selection')
selects a set of atoms |
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HighlightAtoms(self,
indices,
where,
extraHighlight=False)
highlights a set of atoms |
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SetDisplayStyle(self,
obj,
style='')
change the display style of the specified object |
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SelectProteinNeighborhood(self,
aroundObj,
inObj,
distance=5.0,
name='neighborhood',
showSurface=False)
selects the area of a protein around a specified object/selection name;... |
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AddPharmacophore(self,
locs,
colors,
label,
sphereRad=0.5)
adds a set of spheres |
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GetAtomCoords(self,
sels)
returns the coordinates of the selected atoms |
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DisplayHBonds(self,
objName,
molName,
proteinName,
molSelText='(%(molName)s)',
proteinSelText='(%(proteinName)s and not het)')
toggles display of h bonds between the protein and a specified molecule |
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DisplayCollisions(self,
objName,
molName,
proteinName,
distCutoff=3.0,
color='red',
molSelText='(%(molName)s)',
proteinSelText='(%(proteinName)s and not het)')
toggles display of collisions between the protein and a specified molecule |
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Inherited from object :
__delattr__ ,
__format__ ,
__getattribute__ ,
__hash__ ,
__new__ ,
__reduce__ ,
__reduce_ex__ ,
__repr__ ,
__setattr__ ,
__sizeof__ ,
__str__ ,
__subclasshook__
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