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RDKit
Open-source cheminformatics and machine learning.
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a class for efficiently storing sparse vectors of ints More...
#include <SparseIntVect.h>
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typedef std::map< IndexType, int > | StorageType |
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SparseIntVect () | |
SparseIntVect (IndexType length) | |
initialize with a particular length More... | |
SparseIntVect (const SparseIntVect< IndexType > &other) | |
Copy constructor. More... | |
SparseIntVect (const std::string pkl) | |
constructor from a pickle More... | |
SparseIntVect (const char *pkl, const unsigned int len) | |
constructor from a pickle More... | |
~SparseIntVect () | |
destructor (doesn't need to do anything) More... | |
int | getVal (IndexType idx) const |
return the value at an index More... | |
void | setVal (IndexType idx, int val) |
set the value at an index More... | |
int | operator[] (IndexType idx) const |
support indexing using [] More... | |
IndexType | getLength () const |
returns the length More... | |
int | getTotalVal (bool doAbs=false) const |
unsigned int | size () const |
returns the length More... | |
const StorageType & | getNonzeroElements () const |
returns our nonzero elements as a map(IndexType->int) More... | |
SparseIntVect< IndexType > & | operator&= (const SparseIntVect< IndexType > &other) |
const SparseIntVect< IndexType > | operator& (const SparseIntVect< IndexType > &other) const |
SparseIntVect< IndexType > & | operator|= (const SparseIntVect< IndexType > &other) |
const SparseIntVect< IndexType > | operator| (const SparseIntVect< IndexType > &other) const |
SparseIntVect< IndexType > & | operator+= (const SparseIntVect< IndexType > &other) |
const SparseIntVect< IndexType > | operator+ (const SparseIntVect< IndexType > &other) const |
SparseIntVect< IndexType > & | operator-= (const SparseIntVect< IndexType > &other) |
const SparseIntVect< IndexType > | operator- (const SparseIntVect< IndexType > &other) const |
SparseIntVect< IndexType > & | operator*= (int v) |
SparseIntVect< IndexType > & | operator* (int v) |
SparseIntVect< IndexType > & | operator/= (int v) |
SparseIntVect< IndexType > & | operator/ (int v) |
SparseIntVect< IndexType > & | operator+= (int v) |
SparseIntVect< IndexType > & | operator+ (int v) |
SparseIntVect< IndexType > & | operator-= (int v) |
SparseIntVect< IndexType > & | operator- (int v) |
bool | operator== (const SparseIntVect< IndexType > &v2) const |
bool | operator!= (const SparseIntVect< IndexType > &v2) const |
std::string | toString () const |
returns a binary string representation (pickle) More... | |
void | fromString (const std::string &txt) |
a class for efficiently storing sparse vectors of ints
Definition at line 27 of file SparseIntVect.h.
typedef std::map<IndexType,int> RDKit::SparseIntVect< IndexType >::StorageType |
Definition at line 29 of file SparseIntVect.h.
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Definition at line 31 of file SparseIntVect.h.
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initialize with a particular length
Definition at line 34 of file SparseIntVect.h.
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Copy constructor.
Definition at line 37 of file SparseIntVect.h.
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constructor from a pickle
Definition at line 43 of file SparseIntVect.h.
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constructor from a pickle
Definition at line 47 of file SparseIntVect.h.
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destructor (doesn't need to do anything)
Definition at line 52 of file SparseIntVect.h.
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Definition at line 352 of file SparseIntVect.h.
References PRECONDITION, and RDKit::streamRead().
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returns the length
Definition at line 89 of file SparseIntVect.h.
Referenced by RDKit::DiceSimilarity(), RDKit::SparseIntVect< IndexType >::size(), RDKit::TverskySimilarity(), and RDKit::updateFromSequence().
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returns our nonzero elements as a map(IndexType->int)
Definition at line 107 of file SparseIntVect.h.
Referenced by RDKit::updateFromSequence().
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returns the sum of all the elements in the vect the doAbs argument toggles summing the absolute values of the elements
Definition at line 93 of file SparseIntVect.h.
Referenced by RDKit::DiceSimilarity().
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return the value at an index
Definition at line 59 of file SparseIntVect.h.
Referenced by RDKit::SparseIntVect< IndexType >::operator[](), and RDKit::updateFromSequence().
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Definition at line 326 of file SparseIntVect.h.
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Definition at line 147 of file SparseIntVect.h.
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this is a "fuzzy" intesection, the final value of each element is equal to the minimum from the two vects.
Definition at line 116 of file SparseIntVect.h.
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Definition at line 273 of file SparseIntVect.h.
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Definition at line 264 of file SparseIntVect.h.
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Definition at line 223 of file SparseIntVect.h.
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Definition at line 301 of file SparseIntVect.h.
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Definition at line 193 of file SparseIntVect.h.
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Definition at line 292 of file SparseIntVect.h.
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Definition at line 259 of file SparseIntVect.h.
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Definition at line 315 of file SparseIntVect.h.
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Definition at line 229 of file SparseIntVect.h.
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Definition at line 306 of file SparseIntVect.h.
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Definition at line 287 of file SparseIntVect.h.
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Definition at line 278 of file SparseIntVect.h.
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Definition at line 320 of file SparseIntVect.h.
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support indexing using []
Definition at line 86 of file SparseIntVect.h.
References RDKit::SparseIntVect< IndexType >::getVal().
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Definition at line 187 of file SparseIntVect.h.
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this is a "fuzzy" union, the final value of each element is equal to the maximum from the two vects.
Definition at line 156 of file SparseIntVect.h.
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set the value at an index
Definition at line 72 of file SparseIntVect.h.
Referenced by RDKit::updateFromSequence().
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returns the length
Definition at line 103 of file SparseIntVect.h.
References RDKit::SparseIntVect< IndexType >::getLength().
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returns a binary string representation (pickle)
Definition at line 331 of file SparseIntVect.h.
References ci_SPARSEINTVECT_VERSION, and RDKit::streamWrite().