rWikiPathways - R client library for the WikiPathways API


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Documentation for package ‘rWikiPathways’ version 1.6.1

Help Pages

downloadPathwayArchive Download Pathway Archive
findPathwayIdsByLiterature Find Pathway WPIDs By Literature
findPathwayIdsByText Find Pathway WPIDs By Text
findPathwayIdsByXref Find Pathway WPIDs By Xref
findPathwayNamesByLiterature Find Pathway Names By Literature
findPathwayNamesByText Find Pathway Names By Text
findPathwayNamesByXref Find Pathway Names By Xref
findPathwaysByLiterature Find Pathways By Literature
findPathwaysByText Find Pathways By Text
findPathwaysByXref Find Pathways By Xref
findPathwayUrlsByLiterature Find Pathway URLs By Literature
findPathwayUrlsByText Find Pathway URLs By Text
findPathwayUrlsByXref Find Pathway URLs By Xref
getColoredPathway Get Colored Pathway
getCurationTagNames Get Curation Tag Names on a Pathway
getCurationTags Get Curation Tags on a Pathway
getEveryCurationTag Get Every Instance of a Curation Tag
getOntologyTermIds Get Ontology Term IDs by Pathway
getOntologyTermNames Get Ontology Term Names by Pathway
getOntologyTerms Get Ontology Terms by Pathway
getPathway Get Pathway
getPathwayHistory Get Pathway History
getPathwayIdsByCurationTag Get Pathway WPIDs by Curation Tag
getPathwayIdsByOntologyTerm Get Pathway WPIDs by Ontology Term
getPathwayIdsByParentOntologyTerm Get Pathway WPIDs by Parent Ontology Term
getPathwayInfo Get Pathway Info
getPathwaysByCurationTag Get Pathways by Curation Tag
getPathwaysByOntologyTerm Get Pathways by Ontology Term
getPathwaysByParentOntologyTerm Get Pathways by Parent Ontology Term
getRecentChanges Get Recent Changes
getRecentChangesIds Get WPIDs of Recent Changes
getRecentChangesNames Get Pathway Names of Recent Changes
getXrefList Get Xref List
listOrganisms List Organisms
listPathwayIds List Pathway WPIDs
listPathwayNames List Pathway Names
listPathways List Pathways
listPathwayUrls List Pathway URLs
wikipathwaysAPI Open Swagger docs for WikiPathways API
wikipathwaysGET WikiPathways GET