megadepth: BigWig and BAM related utilities


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Documentation for package ‘megadepth’ version 1.12.0

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bam_to_bigwig Convert a BAM file to a BigWig
bam_to_junctions Extract junctions from a BAM file
get_coverage Compute coverage summarizations across a set of regions
install_megadepth Install Megadepth
megadepth_cmd Run Megadepth commands
megadepth_shell Run Megadepth commands
process_junction_table Process junctions into a STAR compatible format
read_coverage Read a coverage TSV file created by Megadepth
read_coverage_table Read a coverage TSV file created by Megadepth
read_junction_table Read a junction TSV file created by Megadepth as a table