skbio.tree.TreeNode.from_linkage_matrix¶
- classmethod TreeNode.from_linkage_matrix(linkage_matrix, id_list)[source]¶
Return tree from SciPy linkage matrix.
State: Experimental as of 0.4.0.
- Parameters:
linkage_matrix (ndarray) – A SciPy linkage matrix as returned by scipy.cluster.hierarchy.linkage
id_list (list) – The indices of the id_list will be used in the linkage_matrix
- Returns:
An unrooted bifurcated tree
- Return type:
See also
scipy.cluster.hierarchy.linkage