skbio.diversity.
beta_diversity
(metric, counts, ids=None, validate=True, pairwise_func=None, **kwargs)[source]¶Compute distances between all pairs of samples
State: Experimental as of 0.4.0.
Parameters: |
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Returns: | Distances between all pairs of samples (i.e., rows). The number of
rows and columns will be equal to the number of rows in |
Return type: | skbio.DistanceMatrix |
Raises: |
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See also
skbio.diversity()
, skbio.diversity.beta()
, skbio.diversity.get_beta_diversity_metrics()
, skbio.diversity.alpha_diversity()
, scipy.spatial.distance.pdist()
, sklearn.metrics.pairwise_distances()