skbio.diversity.beta
)¶This package provides implementations of beta diversity measures for computing
sample dissimilarity. Users of this package should also explore
scipy.spatial.distance.pdist
, as it contains implementations of additional
beta diversity metrics with interfaces similar to those provided here.
unweighted_unifrac (u_counts, v_counts, …) |
Compute unweighted UniFrac |
weighted_unifrac (u_counts, v_counts, …[, …]) |
Compute weighted UniFrac with or without branch length normalization |