skbio.alignment.
make_identity_substitution_matrix
(match_score, mismatch_score, alphabet='ACGTU')[source]¶Generate substitution matrix where all matches are scored equally
Note
Deprecated as of 0.4.0 for removal in 0.6.0. Will be replaced by a SubstitutionMatrix class. To track progress, see [#161](https://github.com/biocore/scikit-bio/issues/161).
Parameters: |
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Returns: | All characters in alphabet are keys in both dictionaries, so that any pair of characters can be looked up to get their match or mismatch score. |
Return type: | dict of dicts |