skbio.sequence.distance
)¶This module contains functions for computing distances between scikit-bio
Sequence
objects. These functions can be used directly or supplied to other
parts of the scikit-bio API that accept a sequence distance metric as input,
such as skbio.sequence.Sequence.distance()
and
skbio.stats.distance.DistanceMatrix.from_iterable()
.
hamming (seq1, seq2) |
Compute Hamming distance between two sequences. |
kmer_distance (seq1, seq2, k[, overlap]) |
Compute the kmer distance between a pair of sequences |