Protein.
iter_kmers
(k, overlap=True)[source]¶Generate kmers of length k from this sequence.
State: Stable as of 0.4.0.
Parameters: |
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Yields: | Sequence – kmer of length k contained in this sequence. |
Raises: |
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Examples
>>> from skbio import Sequence
>>> s = Sequence('ACACGACGTT')
>>> for kmer in s.iter_kmers(4, overlap=False):
... str(kmer)
'ACAC'
'GACG'
>>> for kmer in s.iter_kmers(3, overlap=True):
... str(kmer)
'ACA'
'CAC'
'ACG'
'CGA'
'GAC'
'ACG'
'CGT'
'GTT'