pybedtools.bedtool.BedTool.liftover¶
-
BedTool.
liftover
(chainfile, unmapped=None, liftover_args='')[source]¶ Returns a new BedTool of the liftedOver features, saving the unmapped ones as
unmapped
. Ifunmapped
is None, then discards the unmapped features.liftover_args
is a string of additional args that is passed, verbatim, to liftOver.Needs
liftOver
from UCSC to be on the path and achainfile
downloaded from UCSC.