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18 #ifndef __Speckley_BRICK_H__
19 #define __Speckley_BRICK_H__
21 #include <speckley/SpeckleyDomain.h>
47 double y1,
double z1,
int d0=-1,
int d1=-1,
int d2=-1,
48 const std::vector<double>& points = std::vector<double>(),
49 const std::vector<int>& tags = std::vector<int>(),
63 virtual std::string getDescription()
const;
75 virtual void write(
const std::string& filename)
const;
82 void dump(
const std::string& filename)
const;
100 std::string filename,
101 int byteOrder,
int dataType)
const;
108 const dim_t* borrowSampleReferenceIDs(
int fsType)
const;
114 virtual bool ownSample(
int fsType,
index_t id)
const;
135 virtual dim_t getNumDataPointsGlobal()
const;
142 virtual void Print_Mesh_Info(
const bool full=
false)
const;
179 virtual double getLocalCoordinate(
index_t index,
int dim)
const;
185 virtual boost::python::tuple getGridParameters()
const;
194 const boost::python::tuple& filter)
const;
218 virtual dim_t getNumNodes()
const;
219 virtual dim_t getNumElements()
const;
220 virtual dim_t getNumDOF()
const;
224 virtual void assembleIntegrate(std::vector<real_t>& integrals,
226 virtual void assembleIntegrate(std::vector<cplx_t>& integrals,
234 Assembler_ptr createAssembler(std::string type,
const DataMap& constants)
const;
237 virtual void balanceNeighbours(
escript::Data& data,
bool average)
const;
241 template<
typename Scalar>
243 template<
typename Scalar>
245 template<
typename Scalar>
247 template<
typename Scalar>
249 template<
typename Scalar>
251 template<
typename Scalar>
253 template<
typename Scalar>
255 template<
typename Scalar>
257 template<
typename Scalar>
260 template<
typename Scalar>
262 template<
typename Scalar>
264 template<
typename Scalar>
266 template<
typename Scalar>
268 template<
typename Scalar>
270 template<
typename Scalar>
272 template<
typename Scalar>
274 template<
typename Scalar>
276 template<
typename Scalar>
279 template<
typename Scalar>
280 void integral_order2(std::vector<Scalar>&,
const escript::Data&)
const;
281 template<
typename Scalar>
282 void integral_order3(std::vector<Scalar>&,
const escript::Data&)
const;
283 template<
typename Scalar>
284 void integral_order4(std::vector<Scalar>&,
const escript::Data&)
const;
285 template<
typename Scalar>
286 void integral_order5(std::vector<Scalar>&,
const escript::Data&)
const;
287 template<
typename Scalar>
288 void integral_order6(std::vector<Scalar>&,
const escript::Data&)
const;
289 template<
typename Scalar>
290 void integral_order7(std::vector<Scalar>&,
const escript::Data&)
const;
291 template<
typename Scalar>
292 void integral_order8(std::vector<Scalar>&,
const escript::Data&)
const;
293 template<
typename Scalar>
294 void integral_order9(std::vector<Scalar>&,
const escript::Data&)
const;
295 template<
typename Scalar>
296 void integral_order10(std::vector<Scalar>&,
const escript::Data&)
const;
298 template<
typename Scalar>
299 void assembleIntegrateWorker(std::vector<Scalar>& integrals,
302 template<
typename Scalar>
307 void setCornerNeighbours();
308 void shareEdges(
escript::Data& out,
int rx,
int ry,
int rz)
const;
309 void shareFaces(
escript::Data& out,
int rx,
int ry,
int rz)
const;
318 void populateSampleIds();
320 template<
typename ValueType>
321 void readBinaryGridImpl(
escript::Data& out,
const std::string& filename,
324 #ifdef ESYS_HAVE_BOOST_IO
325 template<
typename ValueType>
330 template<
typename ValueType>
332 const std::string& filename,
int byteOrder)
const;
334 dim_t findNode(
const double *coords)
const;
338 long seed,
const boost::python::tuple& filter)
const;
341 int neighbour_ranks[8];
345 bool neighbour_exists[8];
411 return boost::python::make_tuple(
437 #endif // __Speckley_BRICK_H__
std::map< std::string, int > TagMap
Definition: Speckley.h:46
virtual double getLocalCoordinate(index_t index, int dim) const
returns the index'th coordinate value in given dimension for this rank
Definition: speckley/src/Brick.h:400
virtual const dim_t * getNumElementsPerDim() const
returns the number of elements per MPI rank in each dimension
Definition: speckley/src/Brick.h:154
escript::Data readNcGrid(std::string filename, std::string varname, escript::FunctionSpace fs, const object &pyShape, double fill, const object &pyFirst, const object &pyNum, const object &pyMultiplier, const object &pyReverse)
Definition: speckleycpp.cpp:115
IndexVector m_elementId
Definition: speckley/src/Brick.h:379
IndexVector m_dofId
vector of sample reference identifiers
Definition: speckley/src/Brick.h:377
dim_t m_gNE[3]
total number of elements in each dimension
Definition: speckley/src/Brick.h:349
int m_order
element order (will be m_order + 1 quad points in each axis)
Definition: speckley/src/SpeckleyDomain.h:755
escript::Data readBinaryGridFromZipped(std::string filename, escript::FunctionSpace fs, const object &pyShape, double fill, int byteOrder, int dataType, const object &pyFirst, const object &pyNum, const object &pyMultiplier, const object &pyReverse)
Definition: speckleycpp.cpp:86
virtual dim_t getDofOfNode(dim_t node) const
Definition: speckley/src/Brick.h:390
int m_numDim
Definition: speckley/src/SpeckleyDomain.h:745
virtual const int * getNumSubdivisionsPerDim() const
returns the number of spatial subdivisions in each dimension
Definition: speckley/src/Brick.h:173
Definition: FunctionSpace.h:36
bool probeInterpolationAcross(int fsType_source, const escript::AbstractDomain &domain, int fsType_target, int dim)
Definition: CrossDomainCoupler.cpp:32
virtual dim_t getNumDataPointsGlobal() const
returns the number of data points summed across all MPI processes
Definition: speckley/src/Brick.h:395
virtual IndexVector getNodeDistribution() const
returns the node distribution vector
Definition: speckley/src/Brick.h:167
Definition: AbstractAssembler.cpp:19
dim_t m_NN[3]
number of nodes for this rank in each dimension
Definition: speckley/src/Brick.h:367
escript::Data readBinaryGrid(std::string filename, escript::FunctionSpace fs, const object &pyShape, double fill, int byteOrder, int dataType, const object &pyFirst, const object &pyNum, const object &pyMultiplier, const object &pyReverse)
Definition: speckleycpp.cpp:61
Data represents a collection of datapoints.
Definition: Data.h:64
dim_t m_offset[3]
first node on this rank is at (offset0,offset1,offset2) in global mesh
Definition: speckley/src/Brick.h:370
index_t dim_t
Definition: DataTypes.h:66
std::vector< int > ShapeType
The shape of a single datapoint.
Definition: DataTypes.h:44
virtual dim_t getNumElements() const
returns the number of elements per MPI rank
Definition: speckley/src/Brick.h:430
Brick is the 3-dimensional implementation of a SpeckleyDomain.
Definition: speckley/src/Brick.h:34
IndexVector m_nodeDistribution
Definition: speckley/src/Brick.h:382
SpeckleyDomain extends the AbstractContinuousDomain interface for the Speckley library and is the bas...
Definition: speckley/src/SpeckleyDomain.h:86
const double * getLength() const
returns the lengths of the domain
Definition: speckley/src/Brick.h:215
Definition: CrossDomainCoupler.h:29
double m_dx[3]
grid spacings / cell sizes of domain
Definition: speckley/src/Brick.h:358
boost::shared_ptr< SubWorld > SubWorld_ptr
Definition: SubWorld.h:147
virtual dim_t getNumNodes() const
returns the number of nodes per MPI rank
Definition: speckley/src/Brick.h:424
int index_t
type for array/matrix indices used both globally and on each rank
Definition: DataTypes.h:61
dim_t m_NE[3]
number of elements for this rank in each dimension including shared
Definition: speckley/src/Brick.h:364
Structure that wraps parameters for the grid reading routines.
Definition: speckley/src/SpeckleyDomain.h:53
double m_origin[3]
origin of domain
Definition: speckley/src/Brick.h:352
Base class for all escript domains.
Definition: AbstractDomain.h:51
virtual const dim_t * getNumNodesPerDim() const
returns the number of nodes per MPI rank in each dimension
Definition: speckley/src/Brick.h:148
Definition: speckley/src/DefaultAssembler3D.h:33
std::vector< index_t > IndexVector
Definition: Speckley.h:44
#define Speckley_DLL_API
Definition: speckley/src/system_dep.h:23
Definition: speckley/src/WaveAssembler3D.h:33
std::map< std::string, escript::Data > DataMap
Definition: speckley/src/domainhelpers.h:25
#define ESYS_ASSERT(a, b)
EsysAssert is a MACRO that will throw an exception if the boolean condition specified is false.
Definition: Assert.h:79
const double point_locations[][11]
Definition: Speckley.h:71
virtual boost::python::tuple getGridParameters() const
returns the tuple (origin, spacing, number_of_elements)
Definition: speckley/src/Brick.h:409
virtual dim_t getNumDOF() const
returns the number of degrees of freedom per MPI rank
Definition: speckley/src/Brick.h:418
IndexVector m_nodeId
Definition: speckley/src/Brick.h:378
virtual const dim_t * getNumFacesPerBoundary() const
returns the number of face elements in the order (left,right,bottom,top,front,back) on current MPI ra...
Definition: speckley/src/Brick.h:161