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18 #ifndef __DUDLEY_ELEMENTFILE_H__
19 #define __DUDLEY_ELEMENTFILE_H__
98 bool reducedOrder)
const;
183 #endif // __DUDLEY_ELEMENTFILE_H__
double * DSDX
Definition: dudley/src/ElementFile.h:49
int numShapes
number of shape functions
Definition: dudley/src/ElementFile.h:40
int numShapes
number of shape functions
Definition: dudley/src/ElementFile.h:159
int getNumDataPointsPerSample() const
Return the number of data points per sample.
Definition: Data.h:544
bool isComplex() const
True if components of this data are stored as complex.
Definition: Data.cpp:1160
ElementFile_Jacobians * jacobians_reducedS_reducedQ
Definition: finley/src/ElementFile.h:171
std::vector< IndexPair > ValueAndIndexList
Definition: finley/src/Util.h:31
int * Tag
Tag[i] is the tag of element i.
Definition: dudley/src/ElementFile.h:121
index_t minColor
minimum color value
Definition: finley/src/ElementFile.h:153
void scatter(index_t *index, const ElementFile *in)
Definition: finley/src/ElementFile.cpp:144
void copyTable(index_t offset, index_t nodeOffset, index_t idOffset, const ElementFile *in)
Definition: dudley/src/ElementFile.cpp:94
Definition: dudley/src/ElementFile.h:29
double real_t
type of all real-valued scalars in escript
Definition: DataTypes.h:52
void gather(const index_t *index, const ElementFile *in)
Definition: finley/src/ElementFile.cpp:125
Definition: DudleyException.h:26
ElementFile_Jacobians * jacobians_reducedQ
Definition: dudley/src/ElementFile.h:167
void gather(const index_t *index, const ElementFile *in)
Definition: dudley/src/ElementFile.cpp:134
void createColoring(dim_t numNodes, const index_t *degreeOfFreedom)
Definition: ElementFile_createColoring.cpp:25
ElementFile_Jacobians * jacobians
jacobians of the shape function used for solution approximation
Definition: finley/src/ElementFile.h:159
std::pair< index_t, index_t > getNodeRange() const
Definition: dudley/src/ElementFile.h:170
Definition: dudley/src/NodeFile.h:40
void allocTable(dim_t NE)
allocates the element table within an element file to hold NE elements
Definition: finley/src/ElementFile.cpp:65
@ Nodes
Definition: Dudley.h:53
ElementFile_Jacobians * jacobians_reducedS
Definition: finley/src/ElementFile.h:163
#define INDEX2(_X1_, _X2_, _N1_)
Definition: index.h:23
void swapTable(ElementFile *other)
Definition: dudley/src/ElementFile.cpp:151
boost::shared_ptr< const ReferenceElementSet > const_ReferenceElementSet_ptr
Definition: ReferenceElementSets.h:80
const DataTypes::real_t * getSampleDataRO(DataTypes::RealVectorType::size_type sampleNo, DataTypes::real_t dummy=0) const
Return the sample data for the given sample no. Please do not use this unless you NEED to access samp...
Definition: Data.h:1991
IndexPair getMinMaxInt(int dim, dim_t N, const index_t *values)
Definition: dudley/src/Util.cpp:159
int * Tag
Tag[i] is the tag of element i.
Definition: finley/src/ElementFile.h:129
index_t * Nodes
Nodes[INDEX(k, i, numNodes)] is the k-th node in the i-th element.
Definition: dudley/src/ElementFile.h:133
void freeTable()
deallocates the element table within an element file
Definition: dudley/src/ElementFile.cpp:81
Definition: finley/src/ElementFile.h:29
void allocTable(dim_t NE)
allocates the element table within an element file to hold NE elements
Definition: dudley/src/ElementFile.cpp:54
int numQuad
number of quadrature nodes used to calculate jacobians
Definition: dudley/src/ElementFile.h:38
void createColoring(const IndexVector &dofMap)
Tries to reduce the number of colours used to colour the elements.
Definition: finley/src/ElementFile.cpp:249
boost::shared_ptr< const ReferenceElement > const_ReferenceElement_ptr
Definition: ReferenceElements.h:216
int * Owner
Owner[i] contains the rank that owns element i.
Definition: dudley/src/ElementFile.h:124
void relabelNodes(const IndexVector &newNode, index_t offset)
~ElementFile()
destructor
Definition: finley/src/ElementFile.cpp:55
void markNodes(std::vector< short > &mask, index_t offset) const
Definition: dudley/src/ElementFile.cpp:228
int getDataPointSize() const
Return the size of the data point. It is the product of the data point shape dimensions.
Definition: Data.cpp:1360
double * absD
used to compute volume
Definition: dudley/src/ElementFile.h:44
void setTags(const int newTag, const escript::Data &mask)
Definition: finley/src/ElementFile.cpp:216
ElementFile_Jacobians * jacobians
jacobians of the shape function used for solution approximation
Definition: dudley/src/ElementFile.h:163
index_t * Nodes
Definition: finley/src/ElementFile.h:144
void distributeByRankOfDOF(const std::vector< int > &mpiRankOfDOF, index_t *nodesId)
redistributes the elements including overlap by rank
Definition: finley/src/ElementFile.cpp:330
const char * ename
name of element type
Definition: dudley/src/ElementFile.h:156
void distributeByRankOfDOF(const int *mpiRankOfDOF, const index_t *nodesId)
redistributes the elements including overlap by rank
Definition: ElementFile_distributeByRankOfDOF.cpp:24
index_t maxColor
maximum color value
Definition: finley/src/ElementFile.h:156
int status
status of mesh when jacobians were updated last time
Definition: dudley/src/ElementFile.h:34
#define MPI_INT
Definition: EsysMPI.h:48
ElementFile(const_ReferenceElementSet_ptr refElementSet, escript::JMPI mpiInfo)
Definition: finley/src/ElementFile.cpp:29
index_t maxColor
maximum color value
Definition: dudley/src/ElementFile.h:144
int getNumSamples() const
Return the number of samples.
Definition: Data.h:533
index_t minColor
minimum color value
Definition: dudley/src/ElementFile.h:141
dim_t numElements
number of elements
Definition: finley/src/ElementFile.h:122
static const int localDims[8]
Definition: ShapeTable.h:53
A suite of factory methods for creating 2D and 3D dudley domains.
Definition: dudley/src/Assemble.h:32
ElementFile_Jacobians * jacobians_reducedQ
Definition: finley/src/ElementFile.h:167
int * Owner
Owner[i] contains the rank that owns element i.
Definition: finley/src/ElementFile.h:132
Data represents a collection of datapoints.
Definition: Data.h:64
index_t dim_t
Definition: DataTypes.h:66
escript::JMPI MPIInfo
Definition: finley/src/ElementFile.h:117
dim_t numElements
number of elements
Definition: dudley/src/ElementFile.h:113
boost::shared_ptr< JMPI_ > JMPI
Definition: EsysMPI.h:74
void sortValueAndIndex(ValueAndIndexList &array)
orders a ValueAndIndexList by value.
Definition: finley/src/Util.cpp:39
void freeTable()
deallocates the element table within an element file
Definition: finley/src/ElementFile.cpp:91
Definition: dudley/src/ElementFile.h:53
bool hasReducedIntegrationOrder(const escript::Data &in)
Definition: Dudley.h:61
IndexPair getMinMaxInt(int dim, dim_t N, const index_t *values)
Definition: finley/src/Util.cpp:278
index_t * Id
Definition: dudley/src/ElementFile.h:118
bool hasReducedIntegrationOrder(const escript::Data &in)
returns true if the data object is defined on reduced element types
Definition: finley/src/Util.h:37
index_t * Color
Definition: finley/src/ElementFile.h:150
void swap(index_t *r, index_t *c, double *v, int left, int right)
Definition: SparseMatrix.cpp:57
std::vector< IndexPair > ValueAndIndexList
Definition: dudley/src/Util.h:31
void print(const index_t *nodesId) const
prints information about this element file to stdout
Definition: dudley/src/ElementFile.cpp:117
index_t * Id
Definition: finley/src/ElementFile.h:126
int numDim
number of spatial dimensions of the domain
Definition: dudley/src/ElementFile.h:147
escript::JMPI MPIInfo
Definition: dudley/src/ElementFile.h:110
static const int Dims[8]
Definition: ShapeTable.h:54
bool numSamplesEqual(int numDataPointsPerSample, int numSamples) const
Returns true if the number of data points per sample and the number of samples match the respective a...
Definition: Data.h:555
void optimizeOrdering()
reorders the elements so that they are stored close to the nodes
Definition: dudley/src/ElementFile.cpp:164
int numDim
number of spatial dimensions
Definition: dudley/src/ElementFile.h:36
void updateTagList()
Definition: dudley/src/ElementFile.h:175
void sortValueAndIndex(ValueAndIndexList &array)
orders a ValueAndIndexList by value.
Definition: dudley/src/Util.cpp:39
void setValuesInUse(const int *values, dim_t numValues, std::vector< int > &valuesInUse, escript::JMPI mpiinfo)
Definition: dudley/src/Util.cpp:224
ElementFile(ElementTypeId etype, escript::JMPI mpiInfo)
Definition: dudley/src/ElementFile.cpp:25
void relabelNodes(const index_t *newNode, index_t offset)
Definition: dudley/src/ElementFile.cpp:238
int numLocalDim
dimension of the element e.g. 2 for a line in 2D or 3D
Definition: dudley/src/ElementFile.h:150
int index_t
type for array/matrix indices used both globally and on each rank
Definition: DataTypes.h:61
void copyTable(index_t offset, index_t nodeOffset, index_t idOffset, const ElementFile *in)
Definition: finley/src/ElementFile.cpp:106
void swapTable(ElementFile *other)
Definition: finley/src/ElementFile.cpp:161
void markNodes(std::vector< short > &mask, int offset, bool useLinear)
Definition: finley/src/ElementFile.cpp:305
@ Nodes
Definition: Finley.h:64
dim_t numElements
number of elements
Definition: dudley/src/ElementFile.h:42
double quadweight
used to compute volume
Definition: dudley/src/ElementFile.h:46
std::vector< int > tagsInUse
array of tags which are actually used
Definition: finley/src/ElementFile.h:135
Definition: finley/src/ElementFile.h:63
ElementFile_Jacobians()
Definition: dudley/src/ElementFile_jacobians.cpp:24
index_t * Color
Definition: dudley/src/ElementFile.h:138
const char * getElementName(ElementTypeId id)
Definition: ShapeTable.cpp:104
bool actsExpanded() const
Return true if this Data is expanded or resolves to expanded. That is, if it has a separate value for...
Definition: Data.cpp:1118
const_ReferenceElementSet_ptr referenceElementSet
the reference element to be used
Definition: finley/src/ElementFile.h:120
void setTags(int newTag, const escript::Data &mask)
sets element tags to newTag where mask > 0
Definition: dudley/src/ElementFile.cpp:193
void optimizeOrdering()
reorders the elements so that they are stored close to the nodes
Definition: finley/src/ElementFile.cpp:174
void updateTagList()
Definition: finley/src/ElementFile.h:179
A suite of factory methods for creating various finley domains.
Definition: finley/src/Assemble.h:32
#define ESYS_ASSERT(a, b)
EsysAssert is a MACRO that will throw an exception if the boolean condition specified is false.
Definition: Assert.h:79
std::vector< int > tagsInUse
array of tags which are actually used
Definition: dudley/src/ElementFile.h:127
An exception class that signals an invalid argument value.
Definition: EsysException.h:100
ElementTypeId
Definition: ElementType.h:25
ElementTypeId etype
element type ID
Definition: dudley/src/ElementFile.h:153
~ElementFile_Jacobians()
Definition: dudley/src/ElementFile_jacobians.cpp:35
int numNodes
number of nodes per element
Definition: dudley/src/ElementFile.h:130
std::vector< index_t > IndexVector
Definition: DataTypes.h:64
ElementFile_Jacobians * borrowJacobians(const NodeFile *nodes, bool reducedOrder) const
Definition: dudley/src/ElementFile_jacobians.cpp:41
~ElementFile()
Definition: dudley/src/ElementFile.cpp:47
int numNodes
number of nodes per element
Definition: finley/src/ElementFile.h:138