Go to the documentation of this file.
18 #ifndef __WEIPA_FINLEYNODES_H__
19 #define __WEIPA_FINLEYNODES_H__
21 #include <weipa/NodeData.h>
27 #define NCFTYPE netCDF::NcFile&
31 #define NCFTYPE NcFile*
58 const std::string& meshName);
134 if (result.length() == 0 || *result.rbegin() !=
'/')
143 #endif // __WEIPA_FINLEYNODES_H__
index_t * globalDegreesOfFreedom
Definition: dudley/src/NodeFile.h:157
virtual int getNumNodes() const
Returns the number of mesh nodes.
Definition: FinleyNodes.h:114
const IntVec & getVarDataByName(const std::string &name) const
Returns an array of nodal data by the given name.
Definition: FinleyNodes.cpp:397
index_t * globalReducedNodesIndex
Definition: finley/src/NodeFile.h:181
bool initFromDudley(const dudley::NodeFile *dudleyFile)
Initialises with dudley node file.
Definition: FinleyNodes.cpp:142
IntVec nodeDist
Definition: FinleyNodes.h:125
escript::Distribution_ptr nodesDistribution
MPI distribution of nodes.
Definition: dudley/src/NodeFile.h:164
int numDim
number of spatial dimensions
Definition: dudley/src/NodeFile.h:146
Definition: dudley/src/NodeFile.h:40
index_t * globalDegreesOfFreedom
Definition: finley/src/NodeFile.h:173
virtual std::string getName() const
Returns the name of this node mesh.
Definition: FinleyNodes.h:93
int * Tag
Tag[i] is the tag of node i.
Definition: finley/src/NodeFile.h:166
escript::Distribution_ptr nodesDistribution
MPI distribution of nodes.
Definition: finley/src/NodeFile.h:186
dim_t getNumNodes() const
returns the number of FEM nodes (on this rank)
Definition: dudley/src/NodeFile.h:204
index_t * globalReducedDOFIndex
Definition: finley/src/NodeFile.h:178
virtual void writeCoordinatesVTK(std::ostream &os, int ownIndex)
Writes coordinates to a stream in VTK text format.
Definition: FinleyNodes.cpp:444
IntVec nodeGNI
Definition: FinleyNodes.h:124
std::string siloPath
the name of this node mesh
Definition: FinleyNodes.h:127
bool readFromNc(NcFile *ncFile)
Reads node data from a NetCDF file.
Definition: FinleyNodes.cpp:320
virtual int getGlobalNumNodes() const
Returns the total number of mesh nodes for a distributed mesh.
Definition: FinleyNodes.cpp:433
Definition: DataVar.cpp:51
dim_t getNumNodes() const
returns the number of FEM nodes (on this rank)
Definition: finley/src/NodeFile.h:256
void copy(dim_t N, double *out, const double *in)
out = in
Definition: PasoUtil.h:88
double * Coordinates
Coordinates[INDEX2(k,i,numDim)] is the k-th coordinate of node i.
Definition: finley/src/NodeFile.h:175
Definition: NodeData.h:28
A suite of factory methods for creating 2D and 3D dudley domains.
Definition: dudley/src/Assemble.h:32
IntVec nodeGDOF
Definition: FinleyNodes.h:124
IntVec nodeTag
node IDs
Definition: FinleyNodes.h:124
std::map< int, size_t > IndexMap
Definition: weipa.h:63
std::vector< float * > CoordArray
Definition: weipa.h:62
virtual const IntVec & getGlobalNodeIndices() const
Returns the global node index array.
Definition: FinleyNodes.h:105
bool initFromFinley(const finley::NodeFile *finleyFile)
Initialises with finley node file.
Definition: FinleyNodes.cpp:189
index_t * Id
Id[i] is the unique ID number of FEM node i.
Definition: finley/src/NodeFile.h:164
virtual ~FinleyNodes()
Virtual destructor.
Definition: FinleyNodes.cpp:132
IntVec nodeID
number of nodes
Definition: FinleyNodes.h:123
std::string getFullSiloName() const
Returns full Silo mesh name, e.g. "/block0000/Nodes".
Definition: FinleyNodes.h:131
virtual int getNumDims() const
Returns the dimensionality of this mesh (2 or 3).
Definition: FinleyNodes.h:111
int numNodes
dimensionality (2 or 3)
Definition: FinleyNodes.h:122
bool writeToSilo(DBfile *dbfile)
Writes node data to a Silo file.
Definition: FinleyNodes.cpp:465
void setSiloPath(const std::string &path)
Sets the silo path to be used when saving.
Definition: FinleyNodes.h:82
virtual const CoordArray & getCoords() const
Returns the coordinates of the mesh nodes.
Definition: FinleyNodes.h:108
int numDims
x, y[, z] coordinates of nodes
Definition: FinleyNodes.h:121
#define NCFTYPE
Definition: FinleyNodes.h:31
int index_t
type for array/matrix indices used both globally and on each rank
Definition: DataTypes.h:60
virtual const IntVec & getNodeIDs() const
Returns the node ID array.
Definition: FinleyNodes.h:99
CoordArray coords
Definition: FinleyNodes.h:120
Definition: finley/src/NodeFile.h:42
IntVec nodeGRDFI
Definition: FinleyNodes.h:124
std::string name
node distribution
Definition: FinleyNodes.h:126
FinleyNodes(const std::string &meshName)
Constructor with mesh name.
Definition: FinleyNodes.cpp:55
std::vector< std::string > StringVec
Definition: weipa.h:61
index_t * globalNodesIndex
assigns each local node a global unique ID in a dense labeling
Definition: finley/src/NodeFile.h:183
index_t * Id
Id[i] is the unique ID number of FEM node i.
Definition: dudley/src/NodeFile.h:148
int * Tag
Tag[i] is the tag of node i.
Definition: dudley/src/NodeFile.h:150
Stores and manipulates finley mesh nodes.
Definition: FinleyNodes.h:52
boost::shared_ptr< FinleyNodes > FinleyNodes_ptr
Definition: FinleyNodes.h:43
virtual const IntVec & getNodeDistribution() const
Returns the node distribution array.
Definition: FinleyNodes.h:102
virtual StringVec getVarNames() const
Returns a vector with the mesh variable names.
Definition: FinleyNodes.cpp:418
std::vector< int > IntVec
Definition: weipa.h:60
A suite of factory methods for creating various finley domains.
Definition: finley/src/Assemble.h:32
int numDim
number of spatial dimensions
Definition: finley/src/NodeFile.h:162
double * Coordinates
Coordinates[INDEX2(k,i,numDim)] is the k-th coordinate of node i.
Definition: dudley/src/NodeFile.h:159
IntVec nodeGRNI
Definition: FinleyNodes.h:124
index_t * globalNodesIndex
assigns each local node a global unique ID in a dense labeling
Definition: dudley/src/NodeFile.h:161