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18 #ifndef __RIPLEY_BRICK_H__
19 #define __RIPLEY_BRICK_H__
21 #include <ripley/RipleyDomain.h>
44 double x1,
double y1,
double z1,
int d0=-1,
int d1=-1,
int d2=-1,
45 const std::vector<double>& points = std::vector<double>(),
46 const std::vector<int>& tags = std::vector<int>(),
60 virtual std::string getDescription()
const;
72 virtual void write(
const std::string& filename)
const;
79 void dump(
const std::string& filename)
const;
98 int byteOrder,
int dataType)
const;
105 const dim_t* borrowSampleReferenceIDs(
int fsType)
const;
111 virtual bool ownSample(
int fsType,
index_t id)
const;
132 virtual dim_t getNumDataPointsGlobal()
const;
139 virtual void Print_Mesh_Info(
const bool full=
false)
const;
176 virtual double getLocalCoordinate(
index_t index,
int dim)
const;
182 virtual boost::python::tuple getGridParameters()
const;
191 const boost::python::tuple& filter)
const;
193 virtual Assembler_ptr createAssembler(std::string type,
212 virtual RankVector getOwnerVector(
int fsType)
const;
215 virtual dim_t getNumNodes()
const;
216 virtual dim_t getNumElements()
const;
217 virtual dim_t getNumFaceElements()
const;
218 virtual dim_t getNumDOF()
const;
219 virtual dim_t getNumDOFInAxis(
unsigned axis)
const;
220 virtual dim_t getFirstInDim(
unsigned axis)
const;
222 virtual IndexVector getDiagonalIndices(
bool upperOnly)
const;
226 virtual void assembleIntegrate(std::vector<real_t>& integrals,
228 virtual void assembleIntegrate(std::vector<cplx_t>& integrals,
230 virtual std::vector<IndexVector> getConnections(
bool includeShared=
false)
const;
231 #ifdef ESYS_HAVE_TRILINOS
232 virtual esys_trilinos::const_TrilinosGraph_ptr getTrilinosGraph()
const;
235 #ifdef ESYS_HAVE_PASO
237 bool reducedRowOrder,
bool reducedColOrder)
const;
247 void populateSampleIds();
248 void populateDofMap();
250 template<
typename Scalar>
254 template<
typename Scalar>
256 const std::vector<Scalar>& EM_S,
const std::vector<Scalar>& EM_F,
257 bool addS,
bool addF,
index_t firstNode,
int nEq=1,
int nComp=1)
const;
259 template<
typename ValueType>
260 void readBinaryGridImpl(
escript::Data& out,
const std::string& filename,
262 #ifdef ESYS_HAVE_BOOST_IO
263 template<
typename ValueType>
265 const std::string& filename,
268 template<
typename ValueType>
270 const std::string& filename,
int byteOrder)
const;
272 dim_t findNode(
const double *coords)
const;
276 const boost::python::tuple& filter)
const;
325 #ifdef ESYS_HAVE_PASO
330 #ifdef ESYS_HAVE_TRILINOS
331 mutable esys_trilinos::const_TrilinosGraph_ptr m_graph;
335 template<
typename Scalar>
336 void assembleIntegrateImpl(std::vector<Scalar>& integrals,
const escript::Data& arg)
const;
338 template <
typename S>
341 template <
typename S>
344 bool reduced,
S sentinel)
const;
360 ESYS_ASSERT(dim>=0 && dim<3,
"'dim' out of bounds");
367 return boost::python::make_tuple(
413 #endif // __RIPLEY_BRICK_H__
@ DATATYPE_INT32
Definition: speckley/src/system_dep.h:61
virtual void readNcGrid(escript::Data &out, std::string filename, std::string varname, const ReaderParameters ¶ms) const
reads grid data from a netCDF file into a Data object
Definition: ripley/src/Brick.cpp:475
virtual bool operator==(const escript::AbstractDomain &other) const
equality operator
Definition: ripley/src/Brick.cpp:286
std::map< std::string, int > TagMap
Definition: Speckley.h:46
virtual escript::Data randomFill(const escript::DataTypes::ShapeType &shape, const escript::FunctionSpace &what, long seed, const boost::python::tuple &filter) const
Returns a Data object filled with random data passed through filter.
virtual double getLocalCoordinate(index_t index, int dim) const
returns the index'th coordinate value in given dimension for this rank
Definition: speckley/src/Brick.h:400
int MPI_Status
Definition: EsysMPI.h:45
int getNumDataPointsPerSample() const
Return the number of data points per sample.
Definition: Data.h:544
@ ReducedElements
Definition: Ripley.h:55
virtual void setToNormal(escript::Data &out) const
copies the surface normals at data points into out. The actual function space to be considered is def...
Definition: ripley/src/Brick.cpp:1389
bool isComplex() const
True if components of this data are stored as complex.
Definition: Data.cpp:1160
Definition: ripley/src/AbstractAssembler.h:26
escript::JMPI m_mpiInfo
Definition: ripley/src/RipleyDomain.h:773
neighbourID_t sourceID
Definition: blocktools.h:72
virtual void setToNormal(escript::Data &out) const
copies the surface normals at data points into out. The actual function space to be considered is def...
Definition: speckley/src/Brick.cpp:1260
void populateOffsetTable(size_t inset, size_t xmidlen, size_t ymidlen)
Definition: blocktools2.cpp:184
escript::Data randomFillWorker(const escript::DataTypes::ShapeType &shape, long seed, const boost::python::tuple &filter) const
Definition: speckley/src/Brick.cpp:2816
dim_t m_faceCount[6]
number of face elements per edge (left, right, bottom, top, front, back)
Definition: ripley/src/Brick.h:306
@ DECOMP_STRICT
Definition: ripley/src/RipleyDomain.h:62
void integral_order2(std::vector< Scalar > &, const escript::Data &) const
Definition: BrickIntegrals.cpp:25
IndexVector m_elementId
Definition: speckley/src/Brick.h:379
void writeBinaryGridImpl(const escript::Data &in, const std::string &filename, int byteOrder) const
Definition: speckley/src/Brick.cpp:1006
double real_t
type of all real-valued scalars in escript
Definition: DataTypes.h:51
char * byte_swap64(char *val)
Definition: ripley/src/system_dep.h:115
size_t startOffset(unsigned char subx, unsigned char suby)
Definition: blocktools2.cpp:277
std::map< std::string, escript::Data > DataMap
Definition: ripley/src/domainhelpers.h:25
Definition: blocktools.h:70
Definition: ripley/src/DefaultAssembler3D.h:26
void interpolateNodesOnElementsWorker(escript::Data &out, const escript::Data &in, bool reduced, S sentinel) const
Definition: ripley/src/Brick.cpp:3316
void addToMatrixAndRHS(escript::AbstractSystemMatrix *S, escript::Data &F, const std::vector< Scalar > &EM_S, const std::vector< Scalar > &EM_F, bool addS, bool addF, index_t firstNode, int nEq=1, int nComp=1) const
Definition: ripley/src/Brick.cpp:3239
void addPoints(const std::vector< double > &coords, const std::vector< int > &tags)
Definition: speckley/src/SpeckleyDomain.cpp:1134
const dim_t * borrowSampleReferenceIDs(int fsType) const
returns the array of reference numbers for a function space type
Definition: ripley/src/Brick.cpp:1200
int m_NX[3]
number of spatial subdivisions
Definition: ripley/src/Brick.h:291
void requireWrite()
Ensures data is ready for write access. This means that the data will be resolved if lazy and will be...
Definition: Data.cpp:1239
std::vector< int > m_elementTags
Definition: ripley/src/RipleyDomain.h:776
void dump(const std::string &filename) const
dumps the mesh to a file with the given name
Definition: speckley/src/Brick.cpp:1074
virtual void readBinaryGridFromZipped(escript::Data &out, std::string filename, const ReaderParameters ¶ms) const
reads grid data from a compressed raw binary file into a Data object
Definition: speckley/src/Brick.cpp:566
dim_t m_gNE[3]
total number of elements in each dimension
Definition: speckley/src/Brick.h:349
virtual bool operator==(const escript::AbstractDomain &other) const
equality operator
Definition: speckley/src/Brick.cpp:234
std::vector< dim_t > first
the (global) offset into the data object to start writing into
Definition: ripley/src/RipleyDomain.h:72
void createBuffArrays(double *startaddress, double *buffptr[27], size_t inset, size_t xmidlen, size_t ymidlen)
Definition: blocktools2.cpp:206
#define INDEX4(_X1_, _X2_, _X3_, _X4_, _N1_, _N2_, _N3_)
Definition: index.h:27
virtual double getLocalCoordinate(index_t index, int dim) const
returns the index'th coordinate value in given dimension for this rank
Definition: ripley/src/Brick.h:358
IndexVector m_faceId
Definition: ripley/src/Brick.h:317
std::vector< int > m_faceTags
Definition: ripley/src/RipleyDomain.h:777
friend class WaveAssembler3D
Definition: ripley/src/Brick.h:32
boost::shared_ptr< Distribution > Distribution_ptr
Definition: Distribution.h:25
IndexVector m_diracPointNodeIDs
Definition: speckley/src/SpeckleyDomain.h:752
@ DATATYPE_FLOAT64
Definition: speckley/src/system_dep.h:63
int m_order
element order (will be m_order + 1 quad points in each axis)
Definition: speckley/src/SpeckleyDomain.h:755
neighbourID_t destID
Definition: blocktools.h:73
const unsigned int dpsize
Definition: blocktools.h:289
void assembleGradientImpl(escript::Data &out, const escript::Data &in) const
Definition: ripley/src/Brick.cpp:1722
void assembleIntegrateImpl(std::vector< Scalar > &integrals, const escript::Data &arg) const
Definition: ripley/src/Brick.cpp:2220
dim_t m_ownNE[3]
number of own elements for this rank in each dimension
Definition: ripley/src/Brick.h:297
const dim_t * borrowSampleReferenceIDs(int fsType) const
returns the array of reference numbers for a function space type
Definition: speckley/src/Brick.cpp:1223
#define INDEX2(_X1_, _X2_, _N1_)
Definition: index.h:23
RipleyException exception class.
Definition: RipleyException.h:31
@ Points
Definition: Ripley.h:58
@ DECOMP_ADD_ELEMENTS
Definition: ripley/src/RipleyDomain.h:60
std::map< std::string, int > TagMap
Definition: Ripley.h:47
#define RIPLEY_DLL_API
Definition: ripley/src/system_dep.h:21
const DataTypes::real_t * getSampleDataRO(DataTypes::RealVectorType::size_type sampleNo, DataTypes::real_t dummy=0) const
Return the sample data for the given sample no. Please do not use this unless you NEED to access samp...
Definition: Data.h:1989
size_t dims[9][2]
Definition: blocktools.h:281
void factorise(std::vector< int > &factors, int product)
Definition: ripley/src/domainhelpers.cpp:29
void readBinaryGridImpl(escript::Data &out, const std::string &filename, const ReaderParameters ¶ms) const
Definition: ripley/src/Brick.cpp:669
double m_dx[3]
grid spacings / cell sizes of domain
Definition: ripley/src/Brick.h:288
@ DATATYPE_FLOAT64
Definition: ripley/src/system_dep.h:62
@ DATATYPE_INT32
Definition: ripley/src/system_dep.h:60
An exception class for features which are not (yet) implemented.
Definition: EsysException.h:80
void integral_order6(std::vector< Scalar > &, const escript::Data &) const
Definition: BrickIntegrals.cpp:142
Domain_ptr getPtr()
Returns smart pointer which is managing this object. If one does not exist yet it creates one.
Definition: AbstractDomain.cpp:25
double m_length[3]
side lengths of domain
Definition: speckley/src/Brick.h:355
@ Nodes
Definition: Ripley.h:52
@ ReducedDegreesOfFreedom
Definition: Ripley.h:51
size_t getNumberOfTaggedValues() const
For tagged Data returns the number of tags with values. For non-tagged data will return 0 (even Data ...
Definition: Data.cpp:5859
size_t sx
Definition: blocktools.h:282
void integral_order5(std::vector< Scalar > &, const escript::Data &) const
Definition: BrickIntegrals.cpp:113
@ Elements
Definition: Ripley.h:54
Definition: FileWriter.h:30
void interpolateNodesOnFacesWorker(escript::Data &out, const escript::Data &in, bool reduced, S sentinel) const
Definition: ripley/src/Brick.cpp:3401
void randomFillArray(long seed, double *array, size_t n)
Definition: Random.cpp:75
std::vector< int > m_nodeTags
Definition: speckley/src/SpeckleyDomain.h:749
int byteOrder
byte order in the file (used by binary reader only)
Definition: speckley/src/SpeckleyDomain.h:64
void integral_order3(std::vector< Scalar > &, const escript::Data &) const
Definition: BrickIntegrals.cpp:55
@ DegreesOfFreedom
Definition: Ripley.h:50
boost::shared_ptr< SystemMatrixPattern > SystemMatrixPattern_ptr
Definition: SystemMatrixPattern.h:40
void populateSampleIds()
Definition: speckley/src/Brick.cpp:1465
friend class WaveAssembler3D
Definition: speckley/src/Brick.h:36
dim_t findNode(const double *coords) const
finds the node that the given point coordinates belong to
Definition: speckley/src/Brick.cpp:2821
int m_numDim
Definition: speckley/src/SpeckleyDomain.h:745
void assembleIntegrateWorker(std::vector< Scalar > &integrals, const escript::Data &arg) const
Definition: speckley/src/Brick.cpp:1429
const double * getLength() const
returns the lengths of the domain
Definition: ripley/src/Brick.h:199
@ BYTEORDER_NATIVE
Definition: ripley/src/system_dep.h:47
char * byte_swap32(char *val)
Definition: ripley/src/system_dep.h:108
virtual dim_t getNumNodes() const
returns the number of nodes per MPI rank
Definition: ripley/src/Brick.h:387
virtual dim_t getNumDOFInAxis(unsigned axis) const
Definition: ripley/src/Brick.h:380
int byteOrder
byte order in the file (used by binary reader only)
Definition: ripley/src/RipleyDomain.h:81
IndexVector m_diracPointNodeIDs
Definition: ripley/src/RipleyDomain.h:779
std::vector< dim_t > numValues
the number of values to read from file
Definition: ripley/src/RipleyDomain.h:74
dim_t m_offset[3]
first node on this rank is at (offset0,offset1,offset2) in global mesh
Definition: ripley/src/Brick.h:303
virtual void Print_Mesh_Info(bool full=false) const
writes information about the mesh to standard output
Definition: speckley/src/SpeckleyDomain.cpp:692
virtual IndexVector getNodeDistribution() const
returns the node distribution vector
Definition: ripley/src/Brick.h:164
@ ReducedNodes
Definition: Ripley.h:53
double * outbuff
Definition: blocktools.h:277
virtual void readBinaryGridFromZipped(escript::Data &out, std::string filename, const ReaderParameters ¶ms) const
reads grid data from a compressed raw binary file into a Data object
Definition: ripley/src/Brick.cpp:624
int getDataPointSize() const
Return the size of the data point. It is the product of the data point shape dimensions.
Definition: Data.cpp:1360
void dump(const std::string &filename) const
dumps the mesh to a file with the given name
Definition: ripley/src/Brick.cpp:1050
std::vector< dim_t > first
the (global) offset into the data object to start writing into
Definition: speckley/src/SpeckleyDomain.h:55
void populateDimsTable()
Definition: blocktools2.cpp:166
Definition: LameAssembler3D.h:26
void interpolateFromCorners(escript::Data &out) const
Definition: speckley/src/Brick.cpp:924
Definition: FunctionSpace.h:36
void writeBinaryGridImpl(const escript::Data &in, const std::string &filename, int byteOrder) const
Definition: ripley/src/Brick.cpp:964
virtual void reduceElements(escript::Data &out, const escript::Data &in) const
interpolates from Element -> ReducedElement
Definition: speckley/src/Brick.cpp:1742
virtual Assembler_ptr createAssembler(std::string type, const DataMap &options) const
Definition: ripley/src/Brick.cpp:3972
virtual void MPIBarrier() const
if compiled for MPI then executes an MPI_Barrier, else does nothing
Definition: ripley/src/RipleyDomain.h:142
void integral_order4(std::vector< Scalar > &, const escript::Data &) const
Definition: BrickIntegrals.cpp:84
IndexVector m_faceOffset
Definition: ripley/src/Brick.h:311
virtual void interpolateNodesOnElements(escript::Data &out, const escript::Data &in, bool reduced) const
interpolates data on nodes in 'in' onto elements in 'out'
Definition: speckley/src/Brick.cpp:1793
const FunctionSpace & getFunctionSpace() const
Return the function space.
Definition: Data.h:463
int tag
Definition: blocktools.h:74
dim_t m_NE[3]
number of elements for this rank in each dimension including shared
Definition: ripley/src/Brick.h:294
bool openFile(std::string filename, size_t initialSize=0, bool binary=false, bool append=false)
Definition: FileWriter.h:49
bool probeInterpolationAcross(int fsType_source, const escript::AbstractDomain &domain, int fsType_target, int dim)
Definition: CrossDomainCoupler.cpp:32
double * inbuff
Definition: blocktools.h:276
Definition: Distribution.h:33
virtual boost::python::tuple getGridParameters() const
returns the tuple (origin, spacing, number_of_elements)
Definition: ripley/src/Brick.h:365
virtual dim_t getNumDataPointsGlobal() const
returns the number of data points summed across all MPI processes
Definition: speckley/src/Brick.h:395
IndexVector m_nodeDistribution
Definition: ripley/src/Brick.h:320
virtual dim_t getNumDataPointsGlobal() const
returns the number of data points summed across all MPI processes
Definition: ripley/src/Brick.h:353
Brick(dim_t n0, dim_t n1, dim_t n2, double x0, double y0, double z0, double x1, double y1, double z1, int d0=-1, int d1=-1, int d2=-1, const std::vector< double > &points=std::vector< double >(), const std::vector< int > &tags=std::vector< int >(), const TagMap &tagnamestonums=TagMap(), escript::SubWorld_ptr w=escript::SubWorld_ptr())
creates a hexagonal mesh with n0 x n1 x n2 elements over the brick [x0,x1] x [y0,y1] x [z0,...
Definition: ripley/src/Brick.cpp:89
@ BYTEORDER_NATIVE
Definition: speckley/src/system_dep.h:48
std::vector< int > m_nodeTags
Definition: ripley/src/RipleyDomain.h:775
void integral_order7(std::vector< Scalar > &, const escript::Data &) const
Definition: BrickIntegrals.cpp:171
virtual void readNcGrid(escript::Data &out, std::string filename, std::string varname, const ReaderParameters ¶ms) const
reads grid data from a netCDF file into a Data object
Definition: speckley/src/Brick.cpp:418
Definition: AbstractAssembler.cpp:19
dim_t m_NN[3]
number of nodes for this rank in each dimension
Definition: speckley/src/Brick.h:367
@ DATATYPE_FLOAT32
Definition: ripley/src/system_dep.h:61
std::vector< int > RankVector
Definition: Ripley.h:46
Definition: ripley/src/WaveAssembler3D.h:26
void copy(dim_t N, double *out, const double *in)
out = in
Definition: PasoUtil.h:88
int indexOfMax(dim_t a, dim_t b, dim_t c)
Definition: speckley/src/Brick.cpp:69
virtual void setTagMap(const std::string &name, int tag)
sets a map from a clear tag name to a tag key
Definition: speckley/src/SpeckleyDomain.h:193
double * getOutBuffer(unsigned char subx, unsigned char suby)
Definition: blocktools2.cpp:101
Data represents a collection of datapoints.
Definition: Data.h:64
std::vector< int > m_elementTags
Definition: speckley/src/SpeckleyDomain.h:750
RipleyDomain extends the AbstractContinuousDomain interface for the Ripley library and is the base cl...
Definition: ripley/src/RipleyDomain.h:103
double l2(dim_t n, const double *x, escript::JMPI mpiinfo)
returns the global L2 norm of x
Definition: PasoUtil.cpp:502
static dim_t nz
Definition: SparseMatrix_saveHB.cpp:38
int m_numDim
Definition: ripley/src/RipleyDomain.h:771
#define INDEX3(_X1_, _X2_, _X3_, _N1_, _N2_)
Definition: index.h:25
dim_t m_NN[3]
number of nodes for this rank in each dimension
Definition: ripley/src/Brick.h:300
double * outbuffptr[9]
Definition: blocktools.h:288
dim_t m_offset[3]
first node on this rank is at (offset0,offset1,offset2) in global mesh
Definition: speckley/src/Brick.h:370
index_t dim_t
Definition: DataTypes.h:65
std::vector< int > ShapeType
The shape of a single datapoint.
Definition: DataTypes.h:43
virtual const dim_t * getNumFacesPerBoundary() const
returns the number of face elements in the order (left,right,bottom,top,front,back) on current MPI ra...
Definition: ripley/src/Brick.h:158
std::vector< int > reverse
if non-zero, values are written from last index to first index
Definition: speckley/src/SpeckleyDomain.h:62
dim_t m_faceCount[6]
number of face elements per edge (left, right, bottom, top, front, back)
Definition: speckley/src/Brick.h:373
char * byte_swap64(char *val)
Definition: speckley/src/system_dep.h:116
virtual void assembleCoordinates(escript::Data &arg) const
populates the data object 'arg' with the node coordinates
Definition: ripley/src/Brick.cpp:1683
Base class for escript system matrices.
Definition: AbstractSystemMatrix.h:44
@ DATATYPE_FLOAT32
Definition: speckley/src/system_dep.h:62
escript::JMPI m_mpiInfo
Definition: speckley/src/SpeckleyDomain.h:747
DataTypes::real_t * getSampleDataRW(DataTypes::RealVectorType::size_type sampleNo, DataTypes::real_t dummy=0)
Return the sample data for the given sample no. Please do not use this unless you NEED to access samp...
Definition: Data.h:1954
virtual void write(const std::string &filename) const
writes the current mesh to a file with the given name
Definition: ripley/src/Brick.cpp:1045
escript::Data readBinaryGridFromZipped(std::string filename, escript::FunctionSpace fs, const object &pyShape, double fill, int byteOrder, int dataType, const object &pyFirst, const object &pyNum, const object &pyMultiplier, const object &pyReverse)
Definition: ripleycpp.cpp:88
virtual dim_t getNumElements() const
returns the number of elements per MPI rank
Definition: speckley/src/Brick.h:430
virtual void write(const std::string &filename) const
writes the current mesh to a file with the given name
Definition: speckley/src/Brick.cpp:1069
int noValues(const ShapeType &shape)
Calculate the number of values in a datapoint with the given shape.
Definition: DataTypes.cpp:91
double m_length[3]
side lengths of domain
Definition: ripley/src/Brick.h:285
virtual int getMPISize() const
returns the number of processors used for this domain
Definition: speckley/src/SpeckleyDomain.h:110
Assembler_ptr createAssembler(std::string type, const DataMap &constants) const
Definition: speckley/src/Brick.cpp:2872
Brick is the 3-dimensional implementation of a SpeckleyDomain.
Definition: speckley/src/Brick.h:34
void factorise(std::vector< int > &factors, int product)
Definition: speckley/src/domainhelpers.cpp:30
Definition: SystemMatrixPattern.h:46
virtual bool ownSample(int fsType, index_t id) const
returns true if this rank owns the sample id.
Definition: ripley/src/Brick.cpp:1226
escript::Data readBinaryGrid(std::string filename, escript::FunctionSpace fs, const object &pyShape, double fill, int byteOrder, int dataType, const object &pyFirst, const object &pyNum, const object &pyMultiplier, const object &pyReverse)
Definition: ripleycpp.cpp:63
IndexVector m_nodeDistribution
Definition: speckley/src/Brick.h:382
SpeckleyDomain extends the AbstractContinuousDomain interface for the Speckley library and is the bas...
Definition: speckley/src/SpeckleyDomain.h:86
Definition: blocktools.h:83
std::vector< int > multiplier
Definition: ripley/src/RipleyDomain.h:77
double m_origin[3]
origin of domain
Definition: ripley/src/Brick.h:282
void copyFromBuffer(unsigned char buffid, double *dest)
Definition: blocktools2.cpp:346
size_t sy
Definition: blocktools.h:283
@ ReducedElements
Definition: Speckley.h:64
virtual void assembleIntegrate(std::vector< real_t > &integrals, const escript::Data &arg) const
copies the integrals of the function defined by 'arg' into 'integrals'
Definition: speckley/src/Brick.cpp:1414
escript::Data readNcGrid(std::string filename, std::string varname, escript::FunctionSpace fs, const object &pyShape, double fill, const object &pyFirst, const object &pyNum, const object &pyMultiplier, const object &pyReverse)
Definition: ripleycpp.cpp:117
#define RANK_BELOW(__rank__)
bool isDataPointShapeEqual(int rank, const int *dimensions) const
Returns true if the shape matches the vector (dimensions[0],..., dimensions[rank-1])....
Definition: Data.h:567
virtual void MPIBarrier() const
if compiled for MPI then executes an MPI_Barrier, else does nothing
Definition: speckley/src/SpeckleyDomain.h:122
void integral_order8(std::vector< Scalar > &, const escript::Data &) const
Definition: BrickIntegrals.cpp:200
virtual dim_t getDofOfNode(dim_t node) const
Definition: ripley/src/Brick.h:348
void copyToBuffer(unsigned char buffid, double *src)
Definition: blocktools2.cpp:318
neighbourID_t getNID(coord_t x, coord_t y) const
Definition: blocktools2.cpp:28
double * getInBuffer(unsigned char subx, unsigned char suby)
Definition: blocktools2.cpp:111
void doublyLink(std::vector< ripley::IndexVector > &va, std::vector< ripley::IndexVector > &vb, int a, int b)
Definition: ripley/src/domainhelpers.h:50
size_t flatoffsets[9]
Definition: blocktools.h:279
virtual void writeBinaryGrid(const escript::Data &in, std::string filename, int byteOrder, int dataType) const
writes a Data object to a file in raw binary format
Definition: speckley/src/Brick.cpp:985
virtual void setToSize(escript::Data &out) const
copies the size of samples into out. The actual function space to be considered is defined by out....
Definition: speckley/src/Brick.cpp:1265
~Brick()
Destructor.
Definition: speckley/src/Brick.cpp:221
virtual escript::Data randomFillWorker(const escript::DataTypes::ShapeType &shape, long seed, const boost::python::tuple &filter) const
@ FaceElements
Definition: Ripley.h:56
virtual const int * getNumSubdivisionsPerDim() const
returns the number of spatial subdivisions in each dimension
Definition: ripley/src/Brick.h:170
bool numSamplesEqual(int numDataPointsPerSample, int numSamples) const
Returns true if the number of data points per sample and the number of samples match the respective a...
Definition: Data.h:555
virtual void nodesToDOF(escript::Data &out, const escript::Data &in) const
converts data on nodes in 'in' to degrees of freedom in 'out'
Definition: ripley/src/Brick.cpp:2510
virtual std::string getDescription() const
returns a description for this domain
Definition: speckley/src/Brick.cpp:229
static DecompositionPolicy getDecompositionPolicy()
Definition: ripley/src/RipleyDomain.cpp:58
friend class LameAssembler3D
Definition: ripley/src/Brick.h:33
Definition: CrossDomainCoupler.h:29
virtual void Print_Mesh_Info(const bool full=false) const
writes information about the mesh to standard output
Definition: ripley/src/Brick.cpp:1665
virtual const dim_t * getNumElementsPerDim() const
returns the number of elements per MPI rank in each dimension
Definition: ripley/src/Brick.h:151
@ DegreesOfFreedom
Definition: Speckley.h:59
Block2(size_t sx, size_t sy, size_t inset, size_t xmidlen, size_t ymidlen, unsigned int dpp=1)
Definition: blocktools2.cpp:247
void integral_order9(std::vector< Scalar > &, const escript::Data &) const
Definition: BrickIntegrals.cpp:229
virtual int getContinuousFunctionCode() const
returns a continuous FunctionSpace code
Definition: ripley/src/RipleyDomain.h:400
void updateTagsInUse(int fsType) const
Definition: ripley/src/RipleyDomain.cpp:1269
virtual void setTagMap(const std::string &name, int tag)
sets a map from a clear tag name to a tag key
Definition: ripley/src/RipleyDomain.h:213
virtual void writeBinaryGrid(const escript::Data &in, std::string filename, int byteOrder, int dataType) const
writes a Data object to a file in raw binary format
Definition: ripley/src/Brick.cpp:943
const double * getElementLength() const
returns the lengths of an element
Definition: ripley/src/Brick.h:205
@ Elements
Definition: Speckley.h:63
void updateTagsInUse(int fsType) const
Definition: speckley/src/SpeckleyDomain.cpp:844
Structure that wraps parameters for the grid reading routines.
Definition: ripley/src/RipleyDomain.h:70
void interpolateNodesOnElementsWorker(escript::Data &out, const escript::Data &in, bool reduced) const
Definition: speckley/src/Brick.cpp:1805
double m_dx[3]
grid spacings / cell sizes of domain
Definition: speckley/src/Brick.h:358
virtual void assembleCoordinates(escript::Data &arg) const
populates the data object 'arg' with the node coordinates
Definition: speckley/src/Brick.cpp:1329
size_t buffoffsets[9]
Definition: blocktools.h:278
#define MPI_DOUBLE
Definition: EsysMPI.h:47
size_t xmidlen
Definition: blocktools.h:285
boost::shared_ptr< SubWorld > SubWorld_ptr
Definition: SubWorld.h:147
IndexVector m_dofMap
Definition: ripley/src/Brick.h:323
friend class DefaultAssembler3D
Definition: speckley/src/Brick.h:35
void integral_order10(std::vector< Scalar > &, const escript::Data &) const
Definition: BrickIntegrals.cpp:258
virtual IndexVector getDiagonalIndices(bool upperOnly) const
returns the indices of the occupied matrix diagonals
Definition: ripley/src/Brick.cpp:2484
virtual dim_t getNumNodes() const
returns the number of nodes per MPI rank
Definition: speckley/src/Brick.h:424
Brick is the 3-dimensional implementation of a RipleyDomain.
Definition: ripley/src/Brick.h:30
int dataType
data type in the file (used by binary reader only)
Definition: speckley/src/SpeckleyDomain.h:66
size_t getBuffSize(unsigned char subx, unsigned char suby)
Definition: blocktools2.cpp:121
virtual RankVector getOwnerVector(int fsType) const
returns a vector of rank numbers where vec[i]=n means that rank n 'owns' element/face element i.
Definition: ripley/src/Brick.cpp:1279
virtual dim_t getNumFaceElements() const
returns the number of face elements on current MPI rank
Definition: ripley/src/Brick.h:399
virtual dim_t getNumDOF() const
returns the number of degrees of freedom per MPI rank
Definition: ripley/src/Brick.h:374
#define RANK_LEFT(__rank__)
int index_t
type for array/matrix indices used both globally and on each rank
Definition: DataTypes.h:60
std::vector< index_t > IndexVector
Definition: Ripley.h:44
#define RANK_FRONT(__rank__)
std::vector< int > reverse
if non-zero, values are written from last index to first index
Definition: ripley/src/RipleyDomain.h:79
dim_t findNode(const double *coords) const
finds the node that the given point coordinates belong to
Definition: ripley/src/Brick.cpp:3913
virtual dim_t getNumElements() const
returns the number of elements per MPI rank
Definition: ripley/src/Brick.h:393
dim_t m_NE[3]
number of elements for this rank in each dimension including shared
Definition: speckley/src/Brick.h:364
virtual escript::Data randomFill(const escript::DataTypes::ShapeType &shape, const escript::FunctionSpace &what, long seed, const boost::python::tuple &filter) const
Returns a Data object filled with random data passed through filter.
Definition: speckley/src/Brick.cpp:2785
int m_NX[3]
number of spatial subdivisions
Definition: speckley/src/Brick.h:361
std::vector< int > multiplier
Definition: speckley/src/SpeckleyDomain.h:60
void addPoints(const std::vector< double > &coords, const std::vector< int > &tags)
Definition: ripley/src/RipleyDomain.cpp:1812
IndexVector m_nodeId
Definition: ripley/src/Brick.h:315
virtual void interpolateAcross(escript::Data &target, const escript::Data &source) const
interpolates data given on source onto target where source and target are given on different domains
Definition: speckley/src/Brick.cpp:2896
~Brick()
Destructor.
Definition: ripley/src/Brick.cpp:277
bool used[9]
Definition: blocktools.h:280
virtual void interpolateNodesOnElements(escript::Data &out, const escript::Data &in, bool reduced) const
interpolates data on nodes in 'in' onto (reduced) elements in 'out'
Definition: ripley/src/Brick.cpp:3278
@ ReducedFaceElements
Definition: Ripley.h:57
virtual dim_t getFirstInDim(unsigned axis) const
Definition: ripley/src/Brick.h:406
int indexOfMax(dim_t a, dim_t b, dim_t c)
Definition: ripley/src/Brick.cpp:76
void setUsed(unsigned char buffid)
Definition: blocktools2.cpp:216
int getTypeCode() const
Returns the function space type code.
Definition: FunctionSpace.cpp:95
void populateDofMap()
Definition: ripley/src/Brick.cpp:3064
virtual void Print_Mesh_Info(const bool full=false) const
writes information about the mesh to standard output
Definition: speckley/src/Brick.cpp:1311
virtual int getMPIRank() const
returns the MPI rank of this processor
Definition: speckley/src/SpeckleyDomain.h:116
IndexVector m_elementId
Definition: ripley/src/Brick.h:316
FunctionSpace function(const AbstractDomain &domain)
Return a function FunctionSpace.
Definition: FunctionSpaceFactory.cpp:43
Definition: blocktools.h:120
void populateSampleIds()
Definition: ripley/src/Brick.cpp:2751
Structure that wraps parameters for the grid reading routines.
Definition: speckley/src/SpeckleyDomain.h:53
double m_origin[3]
origin of domain
Definition: speckley/src/Brick.h:352
virtual std::vector< IndexVector > getConnections(bool includeShared=false) const
returns occupied matrix column indices for all matrix rows
Definition: ripley/src/Brick.cpp:3000
int MPI_Request
Definition: EsysMPI.h:43
virtual void readBinaryGrid(escript::Data &out, std::string filename, const ReaderParameters ¶ms) const
reads grid data from a raw binary file into a Data object
Definition: ripley/src/Brick.cpp:648
@ Points
Definition: Speckley.h:67
int MPI_Comm
Definition: EsysMPI.h:42
real_t real_t_eps()
Returns the machine epsilon for the real_t type.
Definition: DataTypes.h:98
boost::shared_ptr< Connector > Connector_ptr
Definition: Coupler.h:38
void displayBlock(unsigned char subx, unsigned char suby, bool out)
Definition: blocktools2.cpp:289
boost::shared_ptr< Pattern > Pattern_ptr
Definition: Pattern.h:38
BlockGrid2(coord_t maxx, coord_t maxy)
Definition: blocktools2.cpp:24
virtual std::string getDescription() const
returns a description for this domain
Definition: ripley/src/Brick.cpp:281
virtual const dim_t * getNumNodesPerDim() const
returns the number of nodes per MPI rank in each dimension
Definition: ripley/src/Brick.h:145
virtual int getMPISize() const
returns the number of processors used for this domain
Definition: ripley/src/RipleyDomain.h:130
bool actsExpanded() const
Return true if this Data is expanded or resolves to expanded. That is, if it has a separate value for...
Definition: Data.cpp:1118
virtual void assembleGradient(escript::Data &out, const escript::Data &in) const
computes the gradient of 'in' and puts the result in 'out'
Definition: speckley/src/Brick.cpp:1355
Base class for all escript domains.
Definition: AbstractDomain.h:51
coord_t xmax
Definition: blocktools.h:221
int getMPIRankWorld()
returns the MPI processor number within MPI_COMM_WORLD
Definition: Utils.cpp:103
void readBinaryGridImpl(escript::Data &out, const std::string &filename, const ReaderParameters ¶ms) const
Definition: speckley/src/Brick.cpp:611
#define S(_J_, _I_)
Definition: ShapeFunctions.cpp:122
std::vector< dim_t > numValues
the number of values to read from file
Definition: speckley/src/SpeckleyDomain.h:57
dim_t m_gNE[3]
total number of elements in each dimension
Definition: ripley/src/Brick.h:279
void close()
Definition: FileWriter.h:199
unsigned char destbuffid
Definition: blocktools.h:76
std::complex< real_t > cplx_t
complex data type
Definition: DataTypes.h:54
virtual void setToSize(escript::Data &out) const
copies the size of samples into out. The actual function space to be considered is defined by out....
Definition: ripley/src/Brick.cpp:1568
Data Scalar(double value, const FunctionSpace &what, bool expanded)
A collection of factory functions for creating Data objects which contain data points of various shap...
Definition: DataFactory.cpp:49
unsigned char srcbuffid
Definition: blocktools.h:75
std::map< std::string, escript::Data > DataMap
Definition: speckley/src/domainhelpers.h:25
int dataType
data type in the file (used by binary reader only)
Definition: ripley/src/RipleyDomain.h:83
virtual bool probeInterpolationAcross(int, const escript::AbstractDomain &, int) const
determines whether interpolation from source to target is possible
Definition: speckley/src/Brick.cpp:2885
size_t ymidlen
Definition: blocktools.h:286
virtual void interpolateElementsOnNodes(escript::Data &out, const escript::Data &in) const
interpolates data on elements in 'in' onto nodes in 'out'
Definition: speckley/src/Brick.cpp:1630
~Block2()
Definition: blocktools2.cpp:160
#define ESYS_ASSERT(a, b)
EsysAssert is a MACRO that will throw an exception if the boolean condition specified is false.
Definition: Assert.h:79
void copyAllToBuffer(double *src)
Definition: blocktools2.cpp:221
bool writeAt(std::ostringstream &oss, long offset)
Definition: FileWriter.h:174
An exception class that signals an invalid argument value.
Definition: EsysException.h:90
#define globalNodeId(x, y, z)
size_t inset
Definition: blocktools.h:284
virtual void readBinaryGrid(escript::Data &out, std::string filename, const ReaderParameters ¶ms) const
reads grid data from a raw binary file into a Data object
Definition: speckley/src/Brick.cpp:590
const double point_locations[][11]
Definition: Speckley.h:71
virtual void interpolateNodesOnFaces(escript::Data &out, const escript::Data &in, bool reduced) const
interpolates data on nodes in 'in' onto (reduced) face elements in 'out'
Definition: ripley/src/Brick.cpp:3296
SpeckleyException exception class.
Definition: SpeckleyException.h:31
char * byte_swap32(char *val)
Definition: speckley/src/system_dep.h:109
#define MATRIX_FORMAT_DEFAULT
Definition: Paso.h:62
double * inbuffptr[9]
Definition: blocktools.h:287
virtual void Print_Mesh_Info(bool full=false) const
writes information about the mesh to standard output
Definition: ripley/src/RipleyDomain.cpp:857
IndexVector m_dofId
vector of sample reference identifiers
Definition: ripley/src/Brick.h:314
coord_t ymax
Definition: blocktools.h:222
@ DECOMP_EXPAND
Definition: ripley/src/RipleyDomain.h:61
IndexVector m_nodeId
Definition: speckley/src/Brick.h:378
static const ShapeType scalarShape
Use this instead of creating empty shape objects for scalars.
Definition: DataTypes.h:47
virtual void assembleIntegrate(std::vector< real_t > &integrals, const escript::Data &arg) const
copies the integrals of the function defined by 'arg' into 'integrals'
Definition: ripley/src/Brick.cpp:2207
void generateInNeighbours(coord_t blockx, coord_t blocky, messvec &v)
Definition: blocktools2.cpp:35
virtual bool ownSample(int fsType, index_t id) const
returns true if this rank owns the sample id.
Definition: speckley/src/Brick.cpp:1243
void copyUsedFromBuffer(double *dest)
Definition: blocktools2.cpp:234
void generateOutNeighbours(coord_t blockx, coord_t blocky, messvec &v)
Definition: blocktools2.cpp:68
virtual void assembleGradient(escript::Data &out, const escript::Data &in) const
computes the gradient of 'in' and puts the result in 'out'
Definition: ripley/src/Brick.cpp:1709
@ Nodes
Definition: Speckley.h:61