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18 #ifndef __FINLEY_NODEFILE_H__
19 #define __FINLEY_NODEFILE_H__
26 #include <escript/Distribution.h>
29 #include <paso/Coupler.h>
31 #ifdef ESYS_HAVE_TRILINOS
32 #include <trilinoswrap/types.h>
191 #ifdef ESYS_HAVE_PASO
195 #ifdef ESYS_HAVE_TRILINOS
196 esys_trilinos::const_TrilinosMap_ptr trilinosRowMap;
197 esys_trilinos::const_TrilinosMap_ptr trilinosReducedRowMap;
198 esys_trilinos::const_TrilinosMap_ptr trilinosColMap;
199 esys_trilinos::const_TrilinosMap_ptr trilinosReducedColMap;
334 #endif // __FINLEY_NODEFILE_H__
void updateTagList()
Definition: finley/src/NodeFile.h:326
NodeFile(int nDim, escript::JMPI MPIInfo)
Definition: finley/src/NodeFile.cpp:104
index_t * globalReducedNodesIndex
Definition: finley/src/NodeFile.h:181
Definition: finley/src/NodeMapping.h:30
dim_t createDenseDOFLabeling()
Definition: finley/src/NodeFile.cpp:525
const IndexVector & borrowReducedNodesTarget() const
Definition: finley/src/NodeFile.h:291
const index_t * borrowTargetReducedNodes() const
Definition: finley/src/NodeFile.h:311
std::pair< index_t, index_t > getGlobalIdRange() const
Definition: finley/src/NodeFile.cpp:226
index_t * globalDegreesOfFreedom
Definition: finley/src/NodeFile.h:173
boost::shared_ptr< Distribution > Distribution_ptr
Definition: Distribution.h:25
const index_t * borrowGlobalReducedNodesIndex() const
Definition: finley/src/NodeFile.h:251
std::pair< index_t, index_t > getGlobalDOFRange() const
Definition: finley/src/NodeFile.cpp:231
dim_t getNumReducedNodes() const
returns the number of reduced order FEM nodes (on this rank)
Definition: finley/src/NodeFile.h:261
void assignMPIRankToDOFs(std::vector< int > &mpiRankOfDOF, const IndexVector &distribution)
Definition: finley/src/NodeFile.cpp:438
int * Tag
Tag[i] is the tag of node i.
Definition: finley/src/NodeFile.h:166
index_t getFirstNode() const
Definition: finley/src/NodeFile.h:216
escript::Distribution_ptr nodesDistribution
MPI distribution of nodes.
Definition: finley/src/NodeFile.h:186
index_t * reducedNodesId
Definition: finley/src/NodeFile.h:203
index_t * globalReducedDOFIndex
Definition: finley/src/NodeFile.h:178
dim_t getNumDegreesOfFreedomTargets() const
returns the number of degrees of freedom targets (own and shared)
Definition: finley/src/NodeFile.h:276
dim_t numNodes
number of nodes
Definition: finley/src/NodeFile.h:151
NodeMapping reducedNodesMapping
Definition: finley/src/NodeFile.h:157
void gather(const index_t *index, const NodeFile *in)
Definition: finley/src/NodeFile.cpp:321
void createDOFMappingAndCoupling(bool reduced)
Definition: finley/src/NodeFile.cpp:772
std::pair< index_t, index_t > getGlobalNodeIDIndexRange() const
Definition: finley/src/NodeFile.cpp:236
const IndexVector & borrowReducedDegreesOfFreedomTarget() const
Definition: finley/src/NodeFile.h:301
dim_t getNumReducedDegreesOfFreedom() const
returns the number of reduced order degrees of freedom (on this rank)
Definition: finley/src/NodeFile.h:271
std::vector< index_t > target
target[i] defines the target of FEM node i=0,...,numNodes-1
Definition: finley/src/NodeMapping.h:82
NodeMapping reducedDegreesOfFreedomMapping
Definition: finley/src/NodeFile.h:148
void setValuesInUse(const int *values, dim_t numValues, std::vector< int > &valuesInUse, escript::JMPI mpiinfo)
Definition: finley/src/Util.cpp:343
dim_t getNumNodes() const
returns the number of FEM nodes (on this rank)
Definition: finley/src/NodeFile.h:256
void createNodeMappings(const IndexVector &indexReducedNodes, const IndexVector &dofDistribution, const IndexVector &nodeDistribution)
Definition: finley/src/NodeFile.cpp:1004
double * Coordinates
Coordinates[INDEX2(k,i,numDim)] is the k-th coordinate of node i.
Definition: finley/src/NodeFile.h:175
Data represents a collection of datapoints.
Definition: Data.h:64
index_t getLastNode() const
Definition: finley/src/NodeFile.h:221
index_t getGlobalNumReducedNodes() const
Definition: finley/src/NodeFile.h:246
index_t dim_t
Definition: DataTypes.h:65
boost::shared_ptr< JMPI_ > JMPI
Definition: EsysMPI.h:72
const index_t * borrowGlobalNodesIndex() const
Definition: finley/src/NodeFile.h:231
dim_t createDenseReducedLabeling(const std::vector< short > &reducedMask, bool useNodes)
Definition: finley/src/NodeFile.cpp:702
~NodeFile()
destructor
Definition: finley/src/NodeFile.cpp:122
escript::JMPI MPIInfo
MPI information.
Definition: finley/src/NodeFile.h:160
dim_t prepareLabeling(const std::vector< short > &mask, IndexVector &buffer, IndexVector &distribution, bool useNodes)
Definition: finley/src/NodeFile.cpp:464
void freeTable()
empties the node table and frees all memory
Definition: finley/src/NodeFile.cpp:162
const IndexVector & borrowNodesTarget() const
Definition: finley/src/NodeFile.h:286
std::vector< index_t > map
maps the target nodes back to the FEM nodes: target[map[i]]=i
Definition: finley/src/NodeMapping.h:84
index_t getFirstReducedNode() const
Definition: finley/src/NodeFile.h:236
index_t * Id
Id[i] is the unique ID number of FEM node i.
Definition: finley/src/NodeFile.h:164
dim_t createDenseNodeLabeling(IndexVector &nodeDistribution, const IndexVector &dofDistribution)
Definition: finley/src/NodeFile.cpp:588
NodeMapping nodesMapping
Definition: finley/src/NodeFile.h:146
int status
Definition: finley/src/NodeFile.h:209
void setCoordinates(const escript::Data &newX)
copies the array newX into this->coordinates
Definition: finley/src/NodeFile.cpp:242
void print() const
Definition: finley/src/NodeFile.cpp:196
escript::Distribution_ptr reducedDegreesOfFreedomDistribution
Definition: finley/src/NodeFile.h:189
escript::Distribution_ptr degreesOfFreedomDistribution
Definition: finley/src/NodeFile.h:188
std::pair< index_t, index_t > getDOFRange() const
Definition: finley/src/NodeFile.cpp:215
int index_t
type for array/matrix indices used both globally and on each rank
Definition: DataTypes.h:60
dim_t getGlobalNumNodes() const
Definition: finley/src/NodeFile.h:226
Definition: finley/src/NodeFile.h:42
Definition: AbstractContinuousDomain.cpp:23
index_t * reducedDegreesOfFreedomId
Definition: finley/src/NodeFile.h:205
NodeMapping degreesOfFreedomMapping
Definition: finley/src/NodeFile.h:147
index_t * globalNodesIndex
assigns each local node a global unique ID in a dense labeling
Definition: finley/src/NodeFile.h:183
const index_t * borrowTargetNodes() const
returns the mapping from local nodes to a target
Definition: finley/src/NodeFile.h:306
escript::Distribution_ptr reducedNodesDistribution
Definition: finley/src/NodeFile.h:187
boost::shared_ptr< Connector > Connector_ptr
Definition: Coupler.h:38
const index_t * borrowTargetDegreesOfFreedom() const
Definition: finley/src/NodeFile.h:316
dim_t getNumDegreesOfFreedom() const
returns the number of degrees of freedom (on this rank)
Definition: finley/src/NodeFile.h:266
index_t getLastReducedNode() const
Definition: finley/src/NodeFile.h:241
dim_t getNumReducedDegreesOfFreedomTargets() const
returns the number of reduced degrees of freedom targets (own and shared)
Definition: finley/src/NodeFile.h:281
const index_t * borrowTargetReducedDegreesOfFreedom() const
Definition: finley/src/NodeFile.h:321
index_t * degreesOfFreedomId
Definition: finley/src/NodeFile.h:204
void scatter(const index_t *index, const NodeFile *in)
Definition: finley/src/NodeFile.cpp:310
void gather_global(const index_t *index, const NodeFile *in)
Definition: finley/src/NodeFile.cpp:329
std::vector< int > tagsInUse
vector of tags which are actually used
Definition: finley/src/NodeFile.h:168
A suite of factory methods for creating various finley domains.
Definition: finley/src/Assemble.h:32
void setTags(int newTag, const escript::Data &mask)
set tags to newTag where mask > 0
Definition: finley/src/NodeFile.cpp:267
int numDim
number of spatial dimensions
Definition: finley/src/NodeFile.h:162
void allocTable(dim_t numNodes)
allocates the node table within this node file to hold numNodes nodes.
Definition: finley/src/NodeFile.cpp:127
const IndexVector & borrowDegreesOfFreedomTarget() const
Definition: finley/src/NodeFile.h:296
void copyTable(index_t offset, index_t idOffset, index_t dofOffset, const NodeFile *in)
Definition: finley/src/NodeFile.cpp:285
std::vector< index_t > IndexVector
Definition: DataTypes.h:63
dim_t getNumTargets() const
returns the number of target nodes (number of items in the map array)
Definition: finley/src/NodeMapping.h:79