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17 #ifndef __DUDLEY_ELEMENTFILE_H__
18 #define __DUDLEY_ELEMENTFILE_H__
27 struct ElementFile_Jacobians
97 bool reducedOrder)
const;
182 #endif // __DUDLEY_ELEMENTFILE_H__
double * DSDX
Definition: dudley/src/ElementFile.h:71
int numShapes
number of shape functions
Definition: dudley/src/ElementFile.h:62
int numShapes
number of shape functions
Definition: dudley/src/ElementFile.h:169
int getNumDataPointsPerSample() const
Return the number of data points per sample.
Definition: Data.h:530
bool isComplex() const
True if components of this data are stored as complex.
Definition: Data.cpp:1163
ElementFile_Jacobians * jacobians_reducedS_reducedQ
Definition: finley/src/ElementFile.h:181
std::vector< IndexPair > ValueAndIndexList
Definition: finley/src/Util.h:53
int * Tag
Tag[i] is the tag of element i.
Definition: dudley/src/ElementFile.h:131
index_t minColor
minimum color value
Definition: finley/src/ElementFile.h:163
void scatter(index_t *index, const ElementFile *in)
Definition: finley/src/ElementFile.cpp:154
void copyTable(index_t offset, index_t nodeOffset, index_t idOffset, const ElementFile *in)
Definition: dudley/src/ElementFile.cpp:104
Definition: dudley/src/ElementFile.h:38
double real_t
type of all real-valued scalars in escript
Definition: DataTypes.h:73
void gather(const index_t *index, const ElementFile *in)
Definition: finley/src/ElementFile.cpp:135
Definition: DudleyException.h:35
ElementFile_Jacobians * jacobians_reducedQ
Definition: dudley/src/ElementFile.h:177
void gather(const index_t *index, const ElementFile *in)
Definition: dudley/src/ElementFile.cpp:144
void createColoring(dim_t numNodes, const index_t *degreeOfFreedom)
Definition: ElementFile_createColoring.cpp:35
ElementFile_Jacobians * jacobians
jacobians of the shape function used for solution approximation
Definition: finley/src/ElementFile.h:169
std::pair< index_t, index_t > getNodeRange() const
Definition: dudley/src/ElementFile.h:180
Definition: dudley/src/NodeFile.h:37
void allocTable(dim_t NE)
allocates the element table within an element file to hold NE elements
Definition: finley/src/ElementFile.cpp:75
ElementFile_Jacobians * jacobians_reducedS
Definition: finley/src/ElementFile.h:173
#define INDEX2(_X1_, _X2_, _N1_)
Definition: index.h:21
void swapTable(ElementFile *other)
Definition: dudley/src/ElementFile.cpp:161
boost::shared_ptr< const ReferenceElementSet > const_ReferenceElementSet_ptr
Definition: ReferenceElementSets.h:90
const DataTypes::real_t * getSampleDataRO(DataTypes::RealVectorType::size_type sampleNo, DataTypes::real_t dummy=0) const
Return the sample data for the given sample no. Please do not use this unless you NEED to access samp...
Definition: Data.h:1975
IndexPair getMinMaxInt(int dim, dim_t N, const index_t *values)
Definition: dudley/src/Util.cpp:181
int * Tag
Tag[i] is the tag of element i.
Definition: finley/src/ElementFile.h:139
index_t * Nodes
Nodes[INDEX(k, i, numNodes)] is the k-th node in the i-th element.
Definition: dudley/src/ElementFile.h:143
void freeTable()
deallocates the element table within an element file
Definition: dudley/src/ElementFile.cpp:91
Definition: finley/src/ElementFile.h:38
void allocTable(dim_t NE)
allocates the element table within an element file to hold NE elements
Definition: dudley/src/ElementFile.cpp:64
int numQuad
number of quadrature nodes used to calculate jacobians
Definition: dudley/src/ElementFile.h:60
void createColoring(const IndexVector &dofMap)
Tries to reduce the number of colours used to colour the elements.
Definition: finley/src/ElementFile.cpp:259
boost::shared_ptr< const ReferenceElement > const_ReferenceElement_ptr
Definition: ReferenceElements.h:211
int * Owner
Owner[i] contains the rank that owns element i.
Definition: dudley/src/ElementFile.h:134
void relabelNodes(const IndexVector &newNode, index_t offset)
~ElementFile()
destructor
Definition: finley/src/ElementFile.cpp:65
void markNodes(std::vector< short > &mask, index_t offset) const
Definition: dudley/src/ElementFile.cpp:238
int getDataPointSize() const
Return the size of the data point. It is the product of the data point shape dimensions.
Definition: Data.cpp:1363
double * absD
used to compute volume
Definition: dudley/src/ElementFile.h:66
void setTags(const int newTag, const escript::Data &mask)
Definition: finley/src/ElementFile.cpp:226
ElementFile_Jacobians * jacobians
jacobians of the shape function used for solution approximation
Definition: dudley/src/ElementFile.h:173
index_t * Nodes
Definition: finley/src/ElementFile.h:154
void distributeByRankOfDOF(const std::vector< int > &mpiRankOfDOF, index_t *nodesId)
redistributes the elements including overlap by rank
Definition: finley/src/ElementFile.cpp:340
const char * ename
name of element type
Definition: dudley/src/ElementFile.h:166
void distributeByRankOfDOF(const int *mpiRankOfDOF, const index_t *nodesId)
redistributes the elements including overlap by rank
Definition: ElementFile_distributeByRankOfDOF.cpp:34
index_t maxColor
maximum color value
Definition: finley/src/ElementFile.h:166
int status
status of mesh when jacobians were updated last time
Definition: dudley/src/ElementFile.h:56
#define MPI_INT
Definition: EsysMPI.h:44
ElementFile(const_ReferenceElementSet_ptr refElementSet, escript::JMPI mpiInfo)
Definition: finley/src/ElementFile.cpp:39
index_t maxColor
maximum color value
Definition: dudley/src/ElementFile.h:154
int getNumSamples() const
Return the number of samples.
Definition: Data.h:519
index_t minColor
minimum color value
Definition: dudley/src/ElementFile.h:151
dim_t numElements
number of elements
Definition: finley/src/ElementFile.h:132
static const int localDims[8]
Definition: ShapeTable.h:63
A suite of factory methods for creating 2D and 3D dudley domains.
Definition: dudley/src/Assemble.h:31
ElementFile_Jacobians * jacobians_reducedQ
Definition: finley/src/ElementFile.h:177
int * Owner
Owner[i] contains the rank that owns element i.
Definition: finley/src/ElementFile.h:142
Data represents a collection of datapoints.
Definition: Data.h:62
index_t dim_t
Definition: DataTypes.h:87
escript::JMPI MPIInfo
Definition: finley/src/ElementFile.h:127
dim_t numElements
number of elements
Definition: dudley/src/ElementFile.h:123
boost::shared_ptr< JMPI_ > JMPI
Definition: EsysMPI.h:70
void sortValueAndIndex(ValueAndIndexList &array)
orders a ValueAndIndexList by value.
Definition: finley/src/Util.cpp:61
void freeTable()
deallocates the element table within an element file
Definition: finley/src/ElementFile.cpp:101
Definition: dudley/src/ElementFile.h:62
bool hasReducedIntegrationOrder(const escript::Data &in)
Definition: Dudley.h:71
IndexPair getMinMaxInt(int dim, dim_t N, const index_t *values)
Definition: finley/src/Util.cpp:300
index_t * Id
Definition: dudley/src/ElementFile.h:128
bool hasReducedIntegrationOrder(const escript::Data &in)
returns true if the data object is defined on reduced element types
Definition: finley/src/Util.h:59
index_t * Color
Definition: finley/src/ElementFile.h:160
void swap(index_t *r, index_t *c, double *v, int left, int right)
Definition: SparseMatrix.cpp:67
std::vector< IndexPair > ValueAndIndexList
Definition: dudley/src/Util.h:53
void print(const index_t *nodesId) const
prints information about this element file to stdout
Definition: dudley/src/ElementFile.cpp:127
index_t * Id
Definition: finley/src/ElementFile.h:136
int numDim
number of spatial dimensions of the domain
Definition: dudley/src/ElementFile.h:157
escript::JMPI MPIInfo
Definition: dudley/src/ElementFile.h:120
static const int Dims[8]
Definition: ShapeTable.h:64
bool numSamplesEqual(int numDataPointsPerSample, int numSamples) const
Returns true if the number of data points per sample and the number of samples match the respective a...
Definition: Data.h:541
void optimizeOrdering()
reorders the elements so that they are stored close to the nodes
Definition: dudley/src/ElementFile.cpp:174
int numDim
number of spatial dimensions
Definition: dudley/src/ElementFile.h:58
void updateTagList()
Definition: dudley/src/ElementFile.h:185
void sortValueAndIndex(ValueAndIndexList &array)
orders a ValueAndIndexList by value.
Definition: dudley/src/Util.cpp:61
void setValuesInUse(const int *values, dim_t numValues, std::vector< int > &valuesInUse, escript::JMPI mpiinfo)
Definition: dudley/src/Util.cpp:246
ElementFile(ElementTypeId etype, escript::JMPI mpiInfo)
Definition: dudley/src/ElementFile.cpp:35
void relabelNodes(const index_t *newNode, index_t offset)
Definition: dudley/src/ElementFile.cpp:248
int numLocalDim
dimension of the element e.g. 2 for a line in 2D or 3D
Definition: dudley/src/ElementFile.h:160
int index_t
type for array/matrix indices used both globally and on each rank
Definition: DataTypes.h:82
void copyTable(index_t offset, index_t nodeOffset, index_t idOffset, const ElementFile *in)
Definition: finley/src/ElementFile.cpp:116
void swapTable(ElementFile *other)
Definition: finley/src/ElementFile.cpp:171
void markNodes(std::vector< short > &mask, int offset, bool useLinear)
Definition: finley/src/ElementFile.cpp:315
dim_t numElements
number of elements
Definition: dudley/src/ElementFile.h:64
double quadweight
used to compute volume
Definition: dudley/src/ElementFile.h:68
std::vector< int > tagsInUse
array of tags which are actually used
Definition: finley/src/ElementFile.h:145
Definition: finley/src/ElementFile.h:72
ElementFile_Jacobians()
Definition: dudley/src/ElementFile_jacobians.cpp:34
index_t * Color
Definition: dudley/src/ElementFile.h:148
const char * getElementName(ElementTypeId id)
Definition: ShapeTable.cpp:114
bool actsExpanded() const
Return true if this Data is expanded or resolves to expanded. That is, if it has a separate value for...
Definition: Data.cpp:1121
const_ReferenceElementSet_ptr referenceElementSet
the reference element to be used
Definition: finley/src/ElementFile.h:130
void setTags(int newTag, const escript::Data &mask)
sets element tags to newTag where mask > 0
Definition: dudley/src/ElementFile.cpp:203
void optimizeOrdering()
reorders the elements so that they are stored close to the nodes
Definition: finley/src/ElementFile.cpp:184
void updateTagList()
Definition: finley/src/ElementFile.h:189
A suite of factory methods for creating various finley domains.
Definition: finley/src/Assemble.h:31
#define ESYS_ASSERT(a, b)
EsysAssert is a MACRO that will throw an exception if the boolean condition specified is false.
Definition: Assert.h:77
std::vector< int > tagsInUse
array of tags which are actually used
Definition: dudley/src/ElementFile.h:137
An exception class that signals an invalid argument value.
Definition: EsysException.h:99
ElementTypeId
Definition: ElementType.h:35
ElementTypeId etype
element type ID
Definition: dudley/src/ElementFile.h:163
~ElementFile_Jacobians()
Definition: dudley/src/ElementFile_jacobians.cpp:45
int numNodes
number of nodes per element
Definition: dudley/src/ElementFile.h:140
std::vector< index_t > IndexVector
Definition: DataTypes.h:85
ElementFile_Jacobians * borrowJacobians(const NodeFile *nodes, bool reducedOrder) const
Definition: dudley/src/ElementFile_jacobians.cpp:51
~ElementFile()
Definition: dudley/src/ElementFile.cpp:57
int numNodes
number of nodes per element
Definition: finley/src/ElementFile.h:148