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17 #ifndef __Speckley_DOMAIN_H__
18 #define __Speckley_DOMAIN_H__
20 #include <speckley/Speckley.h>
21 #include <speckley/SpeckleyException.h>
22 #include <speckley/AbstractAssembler.h>
23 #include <speckley/domainhelpers.h>
25 #include <escript/AbstractContinuousDomain.h>
26 #include <escript/Data.h>
27 #include <escript/FunctionSpace.h>
28 #include <escript/SubWorld.h>
30 #include <boost/python/tuple.hpp>
31 #include <boost/python/list.hpp>
44 typedef std::map<std::string, int>
simap_t;
54 std::vector<dim_t>
first;
109 virtual int getMPISize()
const {
return m_mpiInfo->size; }
115 virtual int getMPIRank()
const {
return m_mpiInfo->rank; }
121 virtual void MPIBarrier()
const {
123 MPI_Barrier(m_mpiInfo->comm);
131 virtual bool onMasterProcessor()
const {
return getMPIRank()==0; }
137 MPI_Comm getMPIComm()
const {
return m_mpiInfo->comm; }
144 virtual bool isValidFunctionSpaceType(
int fsType)
const;
150 virtual std::string functionSpaceTypeAsString(
int fsType)
const;
156 virtual int getDim()
const {
return m_numDim; }
167 return !(operator==(other));
176 virtual std::pair<int,dim_t> getDataShape(
int fsType)
const;
184 int getTagFromSampleNo(
int fsType,
dim_t sampleNo)
const;
192 virtual void setTagMap(
const std::string& name,
int tag) {
193 m_tagMap[name] = tag;
201 virtual int getTag(
const std::string& name)
const {
202 if (m_tagMap.find(name) != m_tagMap.end()) {
203 return m_tagMap.find(name)->second;
214 virtual bool isValidTagName(
const std::string& name)
const {
215 return (m_tagMap.find(name)!=m_tagMap.end());
222 virtual std::string showTagNames()
const;
244 virtual bool probeInterpolationOnDomain(
int fsType_source,
245 int fsType_target)
const;
254 virtual signed char preferredInterpolationOnDomain(
int fsType_source,
255 int fsType_target)
const;
264 commonFunctionSpace(
const std::vector<int>& fs,
int& resultcode)
const;
319 virtual void setTags(
int fsType,
int newTag,
const escript::Data& mask)
const;
326 virtual bool isCellOriented(
int fsType)
const;
334 virtual StatusType getStatus()
const {
return m_status; }
340 virtual int getNumberOfTagsInUse(
int fsType)
const;
346 virtual const int* borrowListOfTagsInUse(
int fsType)
const;
352 virtual bool canTag(
int fsType)
const;
358 virtual int getApproximationOrder(
int fsType)
const {
return 1; }
364 virtual bool supportsContactElements()
const {
return false; }
370 virtual int getContinuousFunctionCode()
const {
return Nodes; }
376 virtual int getReducedContinuousFunctionCode()
const {
377 throw SpeckleyException(
"Speckley does not support reduced functionspaces");
384 virtual int getFunctionCode()
const {
return Elements; }
390 virtual int getReducedFunctionCode()
const {
398 virtual int getFunctionOnBoundaryCode()
const {
399 throw SpeckleyException(
"Speckley does not support face elements");
407 virtual int getReducedFunctionOnBoundaryCode()
const {
415 virtual int getFunctionOnContactZeroCode()
const {
423 virtual int getReducedFunctionOnContactZeroCode()
const {
431 virtual int getFunctionOnContactOneCode()
const {
439 virtual int getReducedFunctionOnContactOneCode()
const {
447 virtual int getSolutionCode()
const {
455 virtual int getReducedSolutionCode()
const {
463 virtual int getDiracDeltaFunctionsCode()
const {
return Points; }
473 virtual int getSystemMatrixTypeId(
const boost::python::object& options)
const;
484 virtual int getTransportTypeId(
int solver,
int preconditioner,
int package,
485 bool symmetry)
const;
492 virtual void setToIntegrals(std::vector<real_t>& integrals,
494 virtual void setToIntegrals(std::vector<cplx_t>& integrals,
505 Assembler_ptr assembler)
const;
513 Assembler_ptr assembler)
const;
521 Assembler_ptr assembler)
const;
528 const boost::python::list& data,
529 Assembler_ptr assembler)
const;
538 Assembler_ptr assembler)
const;
543 void addPDEToTransportProblemFromPython(
546 Assembler_ptr assembler)
const;
554 int column_blocksize,
570 virtual void Print_Mesh_Info(
bool full=
false)
const;
580 virtual void write(
const std::string& filename)
const = 0;
586 virtual std::string getDescription()
const = 0;
593 void dump(
const std::string& filename)
const = 0;
600 const index_t* borrowSampleReferenceIDs(
int fsType)
const = 0;
642 virtual void writeBinaryGrid(
const escript::Data& in, std::string filename,
643 int byteOrder,
int dataType)
const = 0;
649 virtual bool ownSample(
int fsType,
index_t id)
const = 0;
655 virtual dim_t getNumDataPointsGlobal()
const = 0;
661 virtual const dim_t* getNumNodesPerDim()
const = 0;
667 virtual const dim_t* getNumElementsPerDim()
const = 0;
674 virtual const dim_t* getNumFacesPerBoundary()
const = 0;
680 virtual IndexVector getNodeDistribution()
const = 0;
686 virtual const int* getNumSubdivisionsPerDim()
const = 0;
692 virtual double getLocalCoordinate(
dim_t index,
int dim)
const = 0;
698 virtual boost::python::tuple getGridParameters()
const = 0;
705 virtual bool supportsFilter(
const boost::python::tuple& t)
const;
710 virtual Assembler_ptr createAssembler(
const std::string type,
711 const DataMap& options)
const {
715 Assembler_ptr createAssemblerFromPython(
const std::string type,
716 const boost::python::list& options)
const;
722 virtual const double *getLength()
const = 0;
728 inline int getOrder()
const {
return m_order;}
735 mutable std::vector<int> m_nodeTags, m_nodeTagsInUse;
736 mutable std::vector<int> m_elementTags, m_elementTagsInUse;
737 std::vector<DiracPoint> m_diracPoints;
744 template<
typename Scalar>
748 void updateTagsInUse(
int fsType)
const;
754 void addPoints(
const std::vector<double>& coords,
755 const std::vector<int>& tags);
758 template<
typename Scalar>
764 virtual dim_t getNumNodes()
const = 0;
767 virtual dim_t getNumElements()
const = 0;
770 virtual dim_t getNumDOF()
const = 0;
773 virtual void assembleCoordinates(
escript::Data& arg)
const = 0;
780 virtual void assembleIntegrate(std::vector<real_t>& integrals,
782 virtual void assembleIntegrate(std::vector<cplx_t>& integrals,
788 bool reduced)
const = 0;
794 virtual dim_t getDofOfNode(
dim_t node)
const = 0;
800 virtual void balanceNeighbours(
escript::Data& data,
bool average)
const = 0;
807 const DataMap& coefs, Assembler_ptr assembler)
const;
813 Assembler_ptr assembler)
const;
817 Assembler_ptr assembler)
const;
819 template<
typename Scalar>
820 void setToIntegralsWorker(std::vector<Scalar>& integrals,
824 virtual dim_t findNode(
const double *coords)
const = 0;
829 #endif // __Speckley_DOMAIN_H__
Definition: speckley/src/system_dep.h:59
std::map< std::string, int > simap_t
Definition: speckley/src/SpeckleyDomain.h:55
std::map< std::string, int > TagMap
Definition: Speckley.h:57
virtual bool initFromFile(const std::string &filename)
Reads the domain from a dump file.
Definition: weipa/src/SpeckleyDomain.cpp:67
int getNumDataPointsPerSample() const
Return the number of data points per sample.
Definition: Data.h:530
bool isNotEmpty(const std::string target, const DataMap &mapping)
Definition: ripley/src/domainhelpers.h:50
bool isComplex() const
True if components of this data are stored as complex.
Definition: Data.cpp:1163
escript::Data readNcGrid(std::string filename, std::string varname, escript::FunctionSpace fs, const object &pyShape, double fill, const object &pyFirst, const object &pyNum, const object &pyMultiplier, const object &pyReverse)
Definition: speckleycpp.cpp:113
escript::Data getSize() const
Returns the sample size (e.g. the diameter of elements, radius of particles).
Definition: FunctionSpace.cpp:245
virtual std::string showTagNames() const
returns all tag names in a single string separated by commas
Definition: speckley/src/SpeckleyDomain.cpp:146
std::map< std::string, escript::Data > DataMap
Definition: ripley/src/domainhelpers.h:35
std::vector< real_t > DoubleVector
Definition: Speckley.h:56
#define REGISTER_ESCRIPT_EXCEPTION_TRANSLATORS
Definition: ExceptionTranslators.h:24
assembler_t
Definition: speckley/src/SpeckleyDomain.h:46
virtual std::string getDescription() const =0
returns a description for this domain
void requireWrite()
Ensures data is ready for write access. This means that the data will be resolved if lazy and will be...
Definition: Data.cpp:1242
Represents a full Speckley domain including nodes and elements.
Definition: weipa/src/SpeckleyDomain.h:46
virtual Centering getCenteringForFunctionSpace(int fsCode) const
Returns whether data on given function space is node or cell centered.
Definition: weipa/src/SpeckleyDomain.cpp:73
virtual escript::Data getNormal() const
returns boundary normals at the quadrature point on the face elements
Definition: speckley/src/SpeckleyDomain.cpp:436
Definition: speckley/src/system_dep.h:61
#define INDEX2(_X1_, _X2_, _N1_)
Definition: index.h:21
virtual void addToRHSFromPython(escript::Data &rhs, const boost::python::list &data, Assembler_ptr assembler) const
a wrapper for addToRHS that allows calling from Python
Definition: speckley/src/SpeckleyDomain.cpp:746
const DataTypes::real_t * getSampleDataRO(DataTypes::RealVectorType::size_type sampleNo, DataTypes::real_t dummy=0) const
Return the sample data for the given sample no. Please do not use this unless you NEED to access samp...
Definition: Data.h:1975
escript::Domain_ptr _rectangle(int order, double _n0, double _n1, const object &l0, const object &l1, int d0, int d1, const object &objpoints, const object &objtags, escript::SubWorld_ptr world)
Definition: speckleycpp.cpp:233
bool initialized
Definition: VisItControl.cpp:60
FunctionSpace continuousFunction(const AbstractDomain &domain)
Create function space objects.
Definition: FunctionSpaceFactory.cpp:41
std::string siloPath
Definition: weipa/src/SpeckleyDomain.h:88
const DataTypes::ShapeType & getDataPointShape() const
Return a reference to the data point shape.
Definition: Data.h:691
virtual bool onMasterProcessor() const
returns true if on MPI processor 0, else false
Definition: speckley/src/SpeckleyDomain.h:142
Assembler_ptr createAssemblerFromPython(const std::string type, const boost::python::list &options) const
Definition: speckley/src/SpeckleyDomain.cpp:738
void dump(const std::string &filename) const =0
dumps the mesh to a file with the given name
int getOrder() const
returns the order of the domain
Definition: speckley/src/SpeckleyDomain.h:739
int byteOrder
byte order in the file (used by binary reader only)
Definition: speckley/src/SpeckleyDomain.h:74
escript::Data readBinaryGridFromZipped(std::string filename, escript::FunctionSpace fs, const object &pyShape, double fill, int byteOrder, int dataType, const object &pyFirst, const object &pyNum, const object &pyMultiplier, const object &pyReverse)
Definition: speckleycpp.cpp:84
SpeckleyDomain(dim_t dim, int order, escript::SubWorld_ptr p=escript::SubWorld_ptr())
Constructor with number of dimensions. Allocates MPI info structure.
Definition: speckley/src/SpeckleyDomain.cpp:59
virtual NodeData_ptr getMeshByName(const std::string &name) const
Returns the node mesh with given name.
Definition: weipa/src/SpeckleyDomain.cpp:198
boost::shared_ptr< SpeckleyNodes > SpeckleyNodes_ptr
Definition: SpeckleyNodes.h:29
boost::shared_ptr< AbstractDomain > Domain_ptr
Definition: AbstractDomain.h:47
Give a short description of what AbstractTransportProblem does.
Definition: AbstractTransportProblem.h:54
virtual void Print_Mesh_Info(bool full=false) const
writes information about the mesh to standard output
Definition: speckley/src/SpeckleyDomain.cpp:687
int getDataPointSize() const
Return the size of the data point. It is the product of the data point shape dimensions.
Definition: Data.cpp:1363
virtual bool writeToSilo(DBfile *dbfile, const std::string &pathInSilo, const StringVec &labels, const StringVec &units, bool writeMeshData)
Writes the domain to a Silo file.
Definition: weipa/src/SpeckleyDomain.cpp:220
std::vector< dim_t > first
the (global) offset into the data object to start writing into
Definition: speckley/src/SpeckleyDomain.h:65
virtual escript::ASM_ptr newSystemMatrix(int row_blocksize, const escript::FunctionSpace &row_functionspace, int column_blocksize, const escript::FunctionSpace &column_functionspace, int type) const
creates a stiffness matrix and initializes it with zeros
Definition: speckley/src/SpeckleyDomain.cpp:714
virtual boost::python::tuple getGridParameters() const =0
returns the tuple (origin, spacing, number_of_elements)
const escript::Data unpackData(const std::string target, const DataMap &mapping)
Definition: ripley/src/domainhelpers.h:39
virtual StringVec getMeshNames() const
Returns the names of all meshes within this domain.
Definition: weipa/src/SpeckleyDomain.cpp:124
Definition: FunctionSpace.h:45
JMPI makeInfo(MPI_Comm comm, bool owncom)
Definition: EsysMPI.cpp:39
SpeckleyElements_ptr faces
Definition: weipa/src/SpeckleyDomain.h:87
const FunctionSpace & getFunctionSpace() const
Return the function space.
Definition: Data.h:461
boost::shared_ptr< DataVar > DataVar_ptr
Definition: weipa.h:63
Definition: DataVar.cpp:49
bool probeInterpolationAcross(int fsType_source, const escript::AbstractDomain &domain, int fsType_target, int dim)
Definition: CrossDomainCoupler.cpp:30
const_Domain_ptr getDomain() const
Returns the function space domain.
Definition: FunctionSpace.cpp:101
#define MPI_INT
Definition: EsysMPI.h:44
Definition: speckley/src/system_dep.h:46
Definition: AbstractAssembler.cpp:17
Definition: DomainChunk.h:31
int getNumSamples() const
Return the number of samples.
Definition: Data.h:519
void copy(dim_t N, double *out, const double *in)
out = in
Definition: PasoUtil.h:110
virtual void setTagMap(const std::string &name, int tag)
sets a map from a clear tag name to a tag key
Definition: speckley/src/SpeckleyDomain.h:203
escript::Data readBinaryGrid(std::string filename, escript::FunctionSpace fs, const object &pyShape, double fill, int byteOrder, int dataType, const object &pyFirst, const object &pyNum, const object &pyMultiplier, const object &pyReverse)
Definition: speckleycpp.cpp:59
virtual bool initFromEscript(const escript::AbstractDomain *domain)
Initialises the domain using an escript domain instance.
Definition: weipa/src/SpeckleyDomain.cpp:48
#define MPI_COMM_WORLD
Definition: EsysMPI.h:46
Data represents a collection of datapoints.
Definition: Data.h:62
double l2(dim_t n, const double *x, escript::JMPI mpiinfo)
returns the global L2 norm of x
Definition: PasoUtil.cpp:524
virtual DataVar_ptr getDataVarByName(const std::string &name) const
Creates and returns a variable with domain data.
Definition: weipa/src/SpeckleyDomain.cpp:155
escript::Data getX() const
Returns the spatial locations of the data points.
Definition: FunctionSpace.cpp:227
index_t dim_t
Definition: DataTypes.h:87
void tupleListToMap(DataMap &mapping, const bp::list &list)
Definition: speckley/src/SpeckleyDomain.cpp:44
std::vector< int > reverse
if non-zero, values are written from last index to first index
Definition: speckley/src/SpeckleyDomain.h:72
boost::shared_ptr< JMPI_ > JMPI
Definition: EsysMPI.h:70
virtual void readBinaryGridFromZipped(escript::Data &out, std::string filename, const ReaderParameters ¶ms) const =0
reads grid data from a compressed raw binary file into a Data object
boost::shared_ptr< AbstractTransportProblem > ATP_ptr
Definition: AbstractTransportProblem.h:171
Base class for escript system matrices.
Definition: AbstractSystemMatrix.h:53
Stores and manipulates one type of speckley mesh elements (cells, faces).
Definition: SpeckleyElements.h:43
Definition: speckley/src/system_dep.h:60
virtual escript::Data getX() const
returns locations in the SEM nodes
Definition: speckley/src/SpeckleyDomain.cpp:431
DataTypes::real_t * getSampleDataRW(DataTypes::RealVectorType::size_type sampleNo, DataTypes::real_t dummy=0)
Return the sample data for the given sample no. Please do not use this unless you NEED to access samp...
Definition: Data.h:1940
virtual int getMPISize() const
returns the number of processors used for this domain
Definition: speckley/src/SpeckleyDomain.h:120
boost::shared_ptr< ElementData > ElementData_ptr
Definition: weipa.h:65
Brick is the 3-dimensional implementation of a SpeckleyDomain.
Definition: speckley/src/Brick.h:43
virtual void reorderGhostZones(int ownIndex)
Reorders elements so that 'ghost' elements (i.e. those that do not belong to ownIndex) appear last.
Definition: weipa/src/SpeckleyDomain.cpp:210
virtual void writeBinaryGrid(const escript::Data &in, std::string filename, int byteOrder, int dataType) const =0
writes a Data object to a file in raw binary format
Definition: DomainChunk.h:30
SpeckleyDomain extends the AbstractContinuousDomain interface for the Speckley library and is the bas...
Definition: speckley/src/SpeckleyDomain.h:95
Definition: Speckley.h:75
virtual void MPIBarrier() const
if compiled for MPI then executes an MPI_Barrier, else does nothing
Definition: speckley/src/SpeckleyDomain.h:132
bool isEmpty() const
Definition: Data.cpp:1135
std::vector< real_t > DoubleVector
Definition: Ripley.h:56
bool initialized
Definition: weipa/src/SpeckleyDomain.h:84
Definition: Speckley.h:76
virtual bool isValidTagName(const std::string &name) const
returns true if name is a defined tag name
Definition: speckley/src/SpeckleyDomain.h:225
boost::shared_ptr< SpeckleyElements > SpeckleyElements_ptr
Definition: SpeckleyElements.h:31
Rectangle is the 2-dimensional implementation of a SpeckleyDomain.
Definition: speckley/src/Rectangle.h:43
virtual int getTag(const std::string &name) const
returns the tag key for tag name
Definition: speckley/src/SpeckleyDomain.h:212
Definition: Speckley.h:70
Definition: Speckley.h:74
virtual ElementData_ptr getElementsForFunctionSpace(int fsCode) const
Returns the element data for given function space code.
Definition: weipa/src/SpeckleyDomain.cpp:95
virtual StringVec getVarNames() const
Returns the names of all 'special' domain variables.
Definition: weipa/src/SpeckleyDomain.cpp:140
Definition: Speckley.h:73
boost::shared_ptr< SubWorld > SubWorld_ptr
Definition: SubWorld.h:157
virtual std::pair< int, dim_t > getDataShape(int fsType) const
returns the number of data points per sample, and the number of samples as a pair.
Definition: speckley/src/SpeckleyDomain.cpp:120
#define MPI_MIN
Definition: EsysMPI.h:51
SpeckleyElements_ptr cells
Definition: weipa/src/SpeckleyDomain.h:86
Definition: speckley/src/system_dep.h:54
virtual ElementData_ptr getElementsByName(const std::string &name) const
Returns element data with given name.
Definition: weipa/src/SpeckleyDomain.cpp:187
SpeckleyNodes_ptr nodes
Definition: weipa/src/SpeckleyDomain.h:85
Definition: speckley/src/system_dep.h:55
int dataType
data type in the file (used by binary reader only)
Definition: speckley/src/SpeckleyDomain.h:76
BOOST_PYTHON_MODULE(speckleycpp)
Definition: speckleycpp.cpp:317
void RuntimeErrorTranslator(const EsysException &e)
Function which translates an EsysException into a python RuntimeError.
Definition: ExceptionTranslators.cpp:47
virtual void removeGhostZones(int ownIndex)
Removes 'ghost' elements and nodes.
Definition: weipa/src/SpeckleyDomain.cpp:215
int index_t
type for array/matrix indices used both globally and on each rank
Definition: DataTypes.h:82
bool isExpanded() const
Return true if this Data is expanded.
Definition: Data.cpp:1114
std::vector< int > multiplier
Definition: speckley/src/SpeckleyDomain.h:70
virtual void readBinaryGrid(escript::Data &out, std::string filename, const ReaderParameters ¶ms) const =0
reads grid data from a raw binary file into a Data object
boost::shared_ptr< NodeData > NodeData_ptr
Definition: weipa.h:67
std::vector< std::string > StringVec
Definition: weipa.h:59
int getTypeCode() const
Returns the function space type code.
Definition: FunctionSpace.cpp:93
Definition: speckley/src/SpeckleyDomain.h:59
int getDim() const
Return the number of spatial dimensions of the underlying domain.
Definition: FunctionSpace.h:186
virtual int getMPIRank() const
returns the MPI rank of this processor
Definition: speckley/src/SpeckleyDomain.h:126
FunctionSpace function(const AbstractDomain &domain)
Return a function FunctionSpace.
Definition: FunctionSpaceFactory.cpp:53
virtual NodeData_ptr getNodes() const
Returns a pointer to the full nodes.
Definition: weipa/src/SpeckleyDomain.h:79
dim_t node
Definition: speckley/src/SpeckleyDomain.h:85
Data Vector(double value, const FunctionSpace &what, bool expanded)
Return a Data object containing vector data-points. ie: rank 1 data-points.
Definition: DataFactory.cpp:96
Structure that wraps parameters for the grid reading routines.
Definition: speckley/src/SpeckleyDomain.h:62
virtual int getDim() const
returns the number of spatial dimensions of the domain
Definition: speckley/src/SpeckleyDomain.h:167
SpeckleyDomain()
Definition: weipa/src/SpeckleyDomain.cpp:34
Definition: Speckley.h:78
int MPI_Comm
Definition: EsysMPI.h:40
bool actsExpanded() const
Return true if this Data is expanded or resolves to expanded. That is, if it has a separate value for...
Definition: Data.cpp:1121
Base class for all escript domains.
Definition: AbstractDomain.h:56
std::vector< index_t > IndexVector
Definition: Speckley.h:55
std::vector< dim_t > numValues
the number of values to read from file
Definition: speckley/src/SpeckleyDomain.h:67
#define Speckley_DLL_API
Definition: speckley/src/system_dep.h:21
virtual dim_t getNumDataPointsGlobal() const =0
returns the number of data points summed across all MPI processes
boost::shared_ptr< AbstractSystemMatrix > ASM_ptr
Definition: AbstractSystemMatrix.h:43
A struct to contain a dirac point's information.
Definition: speckley/src/SpeckleyDomain.h:83
Centering
Definition: DomainChunk.h:29
int getRowBlockSize() const
returns the row block size
Definition: AbstractSystemMatrix.h:124
Data Scalar(double value, const FunctionSpace &what, bool expanded)
A collection of factory functions for creating Data objects which contain data points of various shap...
Definition: DataFactory.cpp:60
virtual escript::Data getSize() const
returns the element size
Definition: speckley/src/SpeckleyDomain.cpp:441
virtual void readNcGrid(escript::Data &out, std::string filename, std::string varname, const ReaderParameters ¶ms) const =0
reads grid data from a netCDF file into a Data object
std::map< std::string, escript::Data > DataMap
Definition: speckley/src/domainhelpers.h:35
void expand()
Whatever the current Data type make this into a DataExpanded.
Definition: Data.cpp:1183
int getColumnBlockSize() const
returns the column block size
Definition: AbstractSystemMatrix.h:135
std::vector< int > IntVec
Definition: weipa.h:58
virtual NodeData_ptr getMeshForFunctionSpace(int fsCode) const
Returns the node mesh for given function space code.
Definition: weipa/src/SpeckleyDomain.cpp:79
virtual int getSystemMatrixTypeId(const boost::python::object &options) const
returns the identifier of the matrix type to be used for the global stiffness matrix when a particula...
Definition: speckley/src/SpeckleyDomain.cpp:703
An exception class that signals an invalid argument value.
Definition: EsysException.h:99
int tag
Definition: speckley/src/SpeckleyDomain.h:86
A class that provides functionality to read an escript data object from a dump file or an escript::Da...
Definition: DataVar.h:34
AbstractContinuousDomain, base class for continuous domains.
Definition: AbstractContinuousDomain.h:56
SpeckleyException exception class.
Definition: SpeckleyException.h:40
escript::Domain_ptr _brick(int order, double _n0, double _n1, double _n2, const object &l0, const object &l1, const object &l2, int d0, int d1, int d2, const object &objpoints, const object &objtags, escript::SubWorld_ptr world)
Definition: speckleycpp.cpp:141
std::vector< index_t > IndexVector
Definition: DataTypes.h:85
Stores and manipulates speckley mesh nodes.
Definition: SpeckleyNodes.h:37
virtual void addPDEToTransportProblem(AbstractTransportProblem &tp, escript::Data &source, const escript::Data &M, const escript::Data &A, const escript::Data &B, const escript::Data &C, const escript::Data &D, const escript::Data &X, const escript::Data &Y, const escript::Data &d, const escript::Data &y, const escript::Data &d_contact, const escript::Data &y_contact, const escript::Data &d_dirac, const escript::Data &y_dirac) const
adds a PDE onto a transport problem
Definition: AbstractContinuousDomain.cpp:165
virtual void addToSystemFromPython(escript::AbstractSystemMatrix &mat, escript::Data &rhs, const boost::python::list &data, Assembler_ptr assembler) const
a wrapper for addToSystem that allows calling from Python
Definition: speckley/src/SpeckleyDomain.cpp:728
Definition: Speckley.h:72
std::vector< T > extractPyArray(const object &obj, const std::string &name, int expectedLength=0)
Definition: speckleycpp.cpp:34