escript  Revision_
ripley/src/Brick.h
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1 
2 /*****************************************************************************
3 *
4 * Copyright (c) 2003-2018 by The University of Queensland
5 * http://www.uq.edu.au
6 *
7 * Primary Business: Queensland, Australia
8 * Licensed under the Apache License, version 2.0
9 * http://www.apache.org/licenses/LICENSE-2.0
10 *
11 * Development until 2012 by Earth Systems Science Computational Center (ESSCC)
12 * Development 2012-2013 by School of Earth Sciences
13 * Development from 2014 by Centre for Geoscience Computing (GeoComp)
14 *
15 *****************************************************************************/
16 
17 #ifndef __RIPLEY_BRICK_H__
18 #define __RIPLEY_BRICK_H__
19 
20 #include <ripley/RipleyDomain.h>
21 
22 namespace ripley {
23 
28 class RIPLEY_DLL_API Brick: public RipleyDomain
29 {
30  template<class Scalar> friend class DefaultAssembler3D;
31  friend class WaveAssembler3D;
32  friend class LameAssembler3D;
33 public:
34 
42  Brick(dim_t n0, dim_t n1, dim_t n2, double x0, double y0, double z0,
43  double x1, double y1, double z1, int d0=-1, int d1=-1, int d2=-1,
44  const std::vector<double>& points = std::vector<double>(),
45  const std::vector<int>& tags = std::vector<int>(),
46  const TagMap& tagnamestonums = TagMap(),
48 
53  ~Brick();
54 
59  virtual std::string getDescription() const;
60 
64  virtual bool operator==(const escript::AbstractDomain& other) const;
65 
71  virtual void write(const std::string& filename) const;
72 
78  void dump(const std::string& filename) const;
79 
82  virtual void readNcGrid(escript::Data& out, std::string filename,
83  std::string varname, const ReaderParameters& params) const;
84 
87  virtual void readBinaryGrid(escript::Data& out, std::string filename,
88  const ReaderParameters& params) const;
89 
90  virtual void readBinaryGridFromZipped(escript::Data& out, std::string filename,
91  const ReaderParameters& params) const;
92 
95  virtual void writeBinaryGrid(const escript::Data& in,
96  std::string filename,
97  int byteOrder, int dataType) const;
98 
104  const dim_t* borrowSampleReferenceIDs(int fsType) const;
105 
110  virtual bool ownSample(int fsType, index_t id) const;
111 
118  virtual void setToNormal(escript::Data& out) const;
119 
125  virtual void setToSize(escript::Data& out) const;
126 
131  virtual dim_t getNumDataPointsGlobal() const;
132 
138  virtual void Print_Mesh_Info(const bool full=false) const;
139 
144  virtual const dim_t* getNumNodesPerDim() const { return m_NN; }
145 
150  virtual const dim_t* getNumElementsPerDim() const { return m_NE; }
151 
157  virtual const dim_t* getNumFacesPerBoundary() const { return m_faceCount; }
158 
163  virtual IndexVector getNodeDistribution() const { return m_nodeDistribution; }
164 
169  virtual const int* getNumSubdivisionsPerDim() const { return m_NX; }
170 
175  virtual double getLocalCoordinate(index_t index, int dim) const;
176 
181  virtual boost::python::tuple getGridParameters() const;
182 
187  virtual escript::Data randomFill(const escript::DataTypes::ShapeType& shape,
188  const escript::FunctionSpace& what,
189  long seed,
190  const boost::python::tuple& filter) const;
191 
192  virtual Assembler_ptr createAssembler(std::string type,
193  const DataMap& options) const;
198  const double *getLength() const { return m_length; }
199 
204  const double *getElementLength() const { return m_dx; }
205 
211  virtual RankVector getOwnerVector(int fsType) const;
212 
213 protected:
214  virtual dim_t getNumNodes() const;
215  virtual dim_t getNumElements() const;
216  virtual dim_t getNumFaceElements() const;
217  virtual dim_t getNumDOF() const;
218  virtual dim_t getNumDOFInAxis(unsigned axis) const;
219  virtual dim_t getFirstInDim(unsigned axis) const;
220 
221  virtual IndexVector getDiagonalIndices(bool upperOnly) const;
222  virtual void assembleCoordinates(escript::Data& arg) const;
223  virtual void assembleGradient(escript::Data& out,
224  const escript::Data& in) const;
225  virtual void assembleIntegrate(std::vector<real_t>& integrals,
226  const escript::Data& arg) const;
227  virtual void assembleIntegrate(std::vector<cplx_t>& integrals,
228  const escript::Data& arg) const;
229  virtual std::vector<IndexVector> getConnections(bool includeShared=false) const;
230 #ifdef ESYS_HAVE_TRILINOS
231  virtual esys_trilinos::const_TrilinosGraph_ptr getTrilinosGraph() const;
232 #endif
233 
234 #ifdef ESYS_HAVE_PASO
235  virtual paso::SystemMatrixPattern_ptr getPasoMatrixPattern(
236  bool reducedRowOrder, bool reducedColOrder) const;
237 #endif
238  virtual void interpolateNodesOnElements(escript::Data& out,
239  const escript::Data& in, bool reduced) const;
240  virtual void interpolateNodesOnFaces(escript::Data& out,
241  const escript::Data& in,
242  bool reduced) const;
243  virtual void nodesToDOF(escript::Data& out, const escript::Data& in) const;
244  virtual dim_t getDofOfNode(dim_t node) const;
245 
246  void populateSampleIds();
247  void populateDofMap();
248 
249  template<typename Scalar>
250  void assembleGradientImpl(escript::Data& out,
251  const escript::Data& in) const;
252 
253  template<typename Scalar>
254  void addToMatrixAndRHS(escript::AbstractSystemMatrix* S, escript::Data& F,
255  const std::vector<Scalar>& EM_S, const std::vector<Scalar>& EM_F,
256  bool addS, bool addF, index_t firstNode, int nEq=1, int nComp=1) const;
257 
258  template<typename ValueType>
259  void readBinaryGridImpl(escript::Data& out, const std::string& filename,
260  const ReaderParameters& params) const;
261 #ifdef ESYS_HAVE_BOOST_IO
262  template<typename ValueType>
263  void readBinaryGridZippedImpl(escript::Data& out,
264  const std::string& filename,
265  const ReaderParameters& params) const;
266 #endif
267  template<typename ValueType>
268  void writeBinaryGridImpl(const escript::Data& in,
269  const std::string& filename, int byteOrder) const;
270 
271  dim_t findNode(const double *coords) const;
272 
273  virtual escript::Data randomFillWorker(
274  const escript::DataTypes::ShapeType& shape, long seed,
275  const boost::python::tuple& filter) const;
276 
278  dim_t m_gNE[3];
279 
281  double m_origin[3];
282 
284  double m_length[3];
285 
287  double m_dx[3];
288 
290  int m_NX[3];
291 
293  dim_t m_NE[3];
294 
296  dim_t m_ownNE[3];
297 
299  dim_t m_NN[3];
300 
302  dim_t m_offset[3];
303 
305  dim_t m_faceCount[6];
306 
310  IndexVector m_faceOffset;
311 
313  IndexVector m_dofId;
314  IndexVector m_nodeId;
315  IndexVector m_elementId;
316  IndexVector m_faceId;
317 
318  // vector with first node id on each rank
319  IndexVector m_nodeDistribution;
320 
321  // vector that maps each node to a DOF index
322  IndexVector m_dofMap;
323 
324 #ifdef ESYS_HAVE_PASO
325  // the Paso System Matrix pattern
326  mutable paso::SystemMatrixPattern_ptr m_pattern;
327 #endif
328 
329 #ifdef ESYS_HAVE_TRILINOS
330  mutable esys_trilinos::const_TrilinosGraph_ptr m_graph;
332 #endif
333 private:
334  template<typename Scalar>
335  void assembleIntegrateImpl(std::vector<Scalar>& integrals, const escript::Data& arg) const;
336 
337  template <typename S>
338  void interpolateNodesOnElementsWorker(escript::Data& out,
339  const escript::Data& in, bool reduced, S sentinel) const;
340  template <typename S>
341  void interpolateNodesOnFacesWorker(escript::Data& out,
342  const escript::Data& in,
343  bool reduced, S sentinel) const;
344 };
345 
347 inline dim_t Brick::getDofOfNode(dim_t node) const
348 {
349  return m_dofMap[node];
350 }
351 
353 {
354  return (m_gNE[0]+1)*(m_gNE[1]+1)*(m_gNE[2]+1);
355 }
356 
357 inline double Brick::getLocalCoordinate(index_t index, int dim) const
358 {
359  ESYS_ASSERT(dim>=0 && dim<3, "'dim' out of bounds");
360  ESYS_ASSERT(index>=0 && index<m_NN[dim], "'index' out of bounds");
361  return m_origin[dim]+m_dx[dim]*(m_offset[dim]+index);
362 }
363 
364 inline boost::python::tuple Brick::getGridParameters() const
365 {
366  return boost::python::make_tuple(
367  boost::python::make_tuple(m_origin[0], m_origin[1], m_origin[2]),
368  boost::python::make_tuple(m_dx[0], m_dx[1], m_dx[2]),
369  boost::python::make_tuple(m_gNE[0], m_gNE[1], m_gNE[2]));
370 }
371 
372 //protected
373 inline dim_t Brick::getNumDOF() const
374 {
375  return (m_gNE[0]+1)/m_NX[0]*(m_gNE[1]+1)/m_NX[1]*(m_gNE[2]+1)/m_NX[2];
376 }
377 
378 //protected
379 inline dim_t Brick::getNumDOFInAxis(unsigned axis) const
380 {
381  ESYS_ASSERT(axis < m_numDim, "Invalid axis");
382  return (m_gNE[axis]+1)/m_NX[axis];
383 }
384 
385 //protected
386 inline dim_t Brick::getNumNodes() const
387 {
388  return m_NN[0]*m_NN[1]*m_NN[2];
389 }
390 
391 //protected
392 inline dim_t Brick::getNumElements() const
393 {
394  return m_NE[0]*m_NE[1]*m_NE[2];
395 }
396 
397 //protected
398 inline dim_t Brick::getNumFaceElements() const
399 {
400  return m_faceCount[0] + m_faceCount[1] + m_faceCount[2]
401  + m_faceCount[3] + m_faceCount[4] + m_faceCount[5];
402 }
403 
404 //protected
405 inline index_t Brick::getFirstInDim(unsigned axis) const
406 {
407  return m_offset[axis] == 0 ? 0 : 1;
408 }
409 
410 } // end of namespace ripley
411 
412 #endif // __RIPLEY_BRICK_H__
413 
speckley::DATATYPE_INT32
Definition: speckley/src/system_dep.h:59
ripley::Brick::readNcGrid
virtual void readNcGrid(escript::Data &out, std::string filename, std::string varname, const ReaderParameters &params) const
reads grid data from a netCDF file into a Data object
Definition: ripley/src/Brick.cpp:472
ripley::Brick::operator==
virtual bool operator==(const escript::AbstractDomain &other) const
equality operator
Definition: ripley/src/Brick.cpp:283
speckley::TagMap
std::map< std::string, int > TagMap
Definition: Speckley.h:57
ripley::Brick::randomFill
virtual escript::Data randomFill(const escript::DataTypes::ShapeType &shape, const escript::FunctionSpace &what, long seed, const boost::python::tuple &filter) const
Returns a Data object filled with random data passed through filter.
speckley::Brick::getLocalCoordinate
virtual double getLocalCoordinate(index_t index, int dim) const
returns the index'th coordinate value in given dimension for this rank
Definition: speckley/src/Brick.h:410
MPI_Status
int MPI_Status
Definition: EsysMPI.h:43
escript::Data::getNumDataPointsPerSample
int getNumDataPointsPerSample() const
Return the number of data points per sample.
Definition: Data.h:530
ripley::ReducedElements
Definition: Ripley.h:66
ripley::Brick::setToNormal
virtual void setToNormal(escript::Data &out) const
copies the surface normals at data points into out. The actual function space to be considered is def...
Definition: ripley/src/Brick.cpp:1386
escript::Data::isComplex
bool isComplex() const
True if components of this data are stored as complex.
Definition: Data.cpp:1163
ripley
Definition: ripley/src/AbstractAssembler.h:24
ripley::RipleyDomain::m_mpiInfo
escript::JMPI m_mpiInfo
Definition: ripley/src/RipleyDomain.h:770
message::sourceID
neighbourID_t sourceID
Definition: blocktools.h:70
speckley::Brick::setToNormal
virtual void setToNormal(escript::Data &out) const
copies the surface normals at data points into out. The actual function space to be considered is def...
Definition: speckley/src/Brick.cpp:1258
Block2::populateOffsetTable
void populateOffsetTable(size_t inset, size_t xmidlen, size_t ymidlen)
Definition: blocktools2.cpp:182
speckley::Brick::randomFillWorker
escript::Data randomFillWorker(const escript::DataTypes::ShapeType &shape, long seed, const boost::python::tuple &filter) const
Definition: speckley/src/Brick.cpp:2808
ripley::Brick::m_faceCount
dim_t m_faceCount[6]
number of face elements per edge (left, right, bottom, top, front, back)
Definition: ripley/src/Brick.h:328
ripley::DECOMP_STRICT
Definition: ripley/src/RipleyDomain.h:72
speckley::Brick::integral_order2
void integral_order2(std::vector< Scalar > &, const escript::Data &) const
Definition: BrickIntegrals.cpp:35
speckley::Brick::m_elementId
IndexVector m_elementId
Definition: speckley/src/Brick.h:401
speckley::Brick::writeBinaryGridImpl
void writeBinaryGridImpl(const escript::Data &in, const std::string &filename, int byteOrder) const
Definition: speckley/src/Brick.cpp:1004
escript::DataTypes::real_t
double real_t
type of all real-valued scalars in escript
Definition: DataTypes.h:73
ripley::byte_swap64
char * byte_swap64(char *val)
Definition: ripley/src/system_dep.h:113
Block2::startOffset
size_t startOffset(unsigned char subx, unsigned char suby)
Definition: blocktools2.cpp:275
ripley::DataMap
std::map< std::string, escript::Data > DataMap
Definition: ripley/src/domainhelpers.h:35
message
Definition: blocktools.h:67
ripley::DefaultAssembler3D
Definition: ripley/src/DefaultAssembler3D.h:35
ripley::Brick::interpolateNodesOnElementsWorker
void interpolateNodesOnElementsWorker(escript::Data &out, const escript::Data &in, bool reduced, S sentinel) const
Definition: ripley/src/Brick.cpp:3305
ripley::Brick::addToMatrixAndRHS
void addToMatrixAndRHS(escript::AbstractSystemMatrix *S, escript::Data &F, const std::vector< Scalar > &EM_S, const std::vector< Scalar > &EM_F, bool addS, bool addF, index_t firstNode, int nEq=1, int nComp=1) const
Definition: ripley/src/Brick.cpp:3228
speckley::SpeckleyDomain::addPoints
void addPoints(const std::vector< double > &coords, const std::vector< int > &tags)
Definition: speckley/src/SpeckleyDomain.cpp:1064
ripley::Brick::borrowSampleReferenceIDs
const dim_t * borrowSampleReferenceIDs(int fsType) const
returns the array of reference numbers for a function space type
Definition: ripley/src/Brick.cpp:1197
ripley::Brick::m_NX
int m_NX[3]
number of spatial subdivisions
Definition: ripley/src/Brick.h:313
getSrcBuffID2
unsigned char getSrcBuffID2(unsigned char destx, unsigned char desty, bool deltax, bool deltay)
Definition: blocktools2.cpp:379
escript::Data::requireWrite
void requireWrite()
Ensures data is ready for write access. This means that the data will be resolved if lazy and will be...
Definition: Data.cpp:1242
ripley::RipleyDomain::m_elementTags
std::vector< int > m_elementTags
Definition: ripley/src/RipleyDomain.h:773
speckley::Brick::dump
void dump(const std::string &filename) const
dumps the mesh to a file with the given name
Definition: speckley/src/Brick.cpp:1072
speckley::Brick::readBinaryGridFromZipped
virtual void readBinaryGridFromZipped(escript::Data &out, std::string filename, const ReaderParameters &params) const
reads grid data from a compressed raw binary file into a Data object
Definition: speckley/src/Brick.cpp:564
speckley::Brick::m_gNE
dim_t m_gNE[3]
total number of elements in each dimension
Definition: speckley/src/Brick.h:371
speckley::Brick::operator==
virtual bool operator==(const escript::AbstractDomain &other) const
equality operator
Definition: speckley/src/Brick.cpp:232
ripley::ReaderParameters::first
std::vector< dim_t > first
the (global) offset into the data object to start writing into
Definition: ripley/src/RipleyDomain.h:82
Block2::createBuffArrays
void createBuffArrays(double *startaddress, double *buffptr[27], size_t inset, size_t xmidlen, size_t ymidlen)
Definition: blocktools2.cpp:204
INDEX4
#define INDEX4(_X1_, _X2_, _X3_, _X4_, _N1_, _N2_, _N3_)
Definition: index.h:25
ripley::Brick::getLocalCoordinate
virtual double getLocalCoordinate(index_t index, int dim) const
returns the index'th coordinate value in given dimension for this rank
Definition: ripley/src/Brick.h:368
ripley::Brick::m_faceId
IndexVector m_faceId
Definition: ripley/src/Brick.h:339
ripley::RipleyDomain::m_faceTags
std::vector< int > m_faceTags
Definition: ripley/src/RipleyDomain.h:774
ripley::Brick::WaveAssembler3D
friend class WaveAssembler3D
Definition: ripley/src/Brick.h:54
escript::Distribution_ptr
boost::shared_ptr< Distribution > Distribution_ptr
Definition: Distribution.h:35
speckley::SpeckleyDomain::m_diracPointNodeIDs
IndexVector m_diracPointNodeIDs
Definition: speckley/src/SpeckleyDomain.h:749
speckley::DATATYPE_FLOAT64
Definition: speckley/src/system_dep.h:61
speckley::SpeckleyDomain::m_order
int m_order
element order (will be m_order + 1 quad points in each axis)
Definition: speckley/src/SpeckleyDomain.h:752
message::destID
neighbourID_t destID
Definition: blocktools.h:71
Block2::dpsize
const unsigned int dpsize
Definition: blocktools.h:287
ripley::Brick::assembleGradientImpl
void assembleGradientImpl(escript::Data &out, const escript::Data &in) const
Definition: ripley/src/Brick.cpp:1719
ripley::Brick::assembleIntegrateImpl
void assembleIntegrateImpl(std::vector< Scalar > &integrals, const escript::Data &arg) const
Definition: ripley/src/Brick.cpp:2217
ripley::Brick::m_ownNE
dim_t m_ownNE[3]
number of own elements for this rank in each dimension
Definition: ripley/src/Brick.h:319
speckley::Brick::borrowSampleReferenceIDs
const dim_t * borrowSampleReferenceIDs(int fsType) const
returns the array of reference numbers for a function space type
Definition: speckley/src/Brick.cpp:1221
INDEX2
#define INDEX2(_X1_, _X2_, _N1_)
Definition: index.h:21
ripley::RipleyException
RipleyException exception class.
Definition: RipleyException.h:40
ripley::Points
Definition: Ripley.h:69
ripley::DECOMP_ADD_ELEMENTS
Definition: ripley/src/RipleyDomain.h:70
ripley::TagMap
std::map< std::string, int > TagMap
Definition: Ripley.h:58
RIPLEY_DLL_API
#define RIPLEY_DLL_API
Definition: ripley/src/system_dep.h:19
escript::Data::getSampleDataRO
const DataTypes::real_t * getSampleDataRO(DataTypes::RealVectorType::size_type sampleNo, DataTypes::real_t dummy=0) const
Return the sample data for the given sample no. Please do not use this unless you NEED to access samp...
Definition: Data.h:1975
Block2::dims
size_t dims[9][2]
Definition: blocktools.h:279
ripley::factorise
void factorise(std::vector< int > &factors, int product)
Definition: ripley/src/domainhelpers.cpp:39
ripley::Brick::readBinaryGridImpl
void readBinaryGridImpl(escript::Data &out, const std::string &filename, const ReaderParameters &params) const
Definition: ripley/src/Brick.cpp:666
ripley::Brick::m_dx
double m_dx[3]
grid spacings / cell sizes of domain
Definition: ripley/src/Brick.h:310
ripley::DATATYPE_FLOAT64
Definition: ripley/src/system_dep.h:60
ripley::DATATYPE_INT32
Definition: ripley/src/system_dep.h:58
escript::NotImplementedError
An exception class for features which are not (yet) implemented.
Definition: EsysException.h:89
speckley::Brick::integral_order6
void integral_order6(std::vector< Scalar > &, const escript::Data &) const
Definition: BrickIntegrals.cpp:152
escript::AbstractDomain::getPtr
Domain_ptr getPtr()
Returns smart pointer which is managing this object. If one does not exist yet it creates one.
Definition: AbstractDomain.cpp:36
speckley::Brick::m_length
double m_length[3]
side lengths of domain
Definition: speckley/src/Brick.h:377
ripley::Nodes
Definition: Ripley.h:63
ripley::ReducedDegreesOfFreedom
Definition: Ripley.h:62
Block2::sx
size_t sx
Definition: blocktools.h:280
speckley::Brick::integral_order5
void integral_order5(std::vector< Scalar > &, const escript::Data &) const
Definition: BrickIntegrals.cpp:123
ripley::Elements
Definition: Ripley.h:65
escript::FileWriter
Definition: FileWriter.h:39
ripley::Brick::interpolateNodesOnFacesWorker
void interpolateNodesOnFacesWorker(escript::Data &out, const escript::Data &in, bool reduced, S sentinel) const
Definition: ripley/src/Brick.cpp:3390
escript::DataTypes::DataVectorAlt< real_t >
escript::randomFillArray
void randomFillArray(long seed, double *array, size_t n)
Definition: Random.cpp:73
speckley::SpeckleyDomain::m_nodeTags
std::vector< int > m_nodeTags
Definition: speckley/src/SpeckleyDomain.h:746
speckley::ReaderParameters::byteOrder
int byteOrder
byte order in the file (used by binary reader only)
Definition: speckley/src/SpeckleyDomain.h:74
speckley::Brick::integral_order3
void integral_order3(std::vector< Scalar > &, const escript::Data &) const
Definition: BrickIntegrals.cpp:65
ripley::DegreesOfFreedom
Definition: Ripley.h:61
paso::SystemMatrixPattern_ptr
boost::shared_ptr< SystemMatrixPattern > SystemMatrixPattern_ptr
Definition: SystemMatrixPattern.h:50
speckley::Brick::populateSampleIds
void populateSampleIds()
Definition: speckley/src/Brick.cpp:1457
speckley::Brick::WaveAssembler3D
friend class WaveAssembler3D
Definition: speckley/src/Brick.h:58
speckley::Brick::findNode
dim_t findNode(const double *coords) const
finds the node that the given point coordinates belong to
Definition: speckley/src/Brick.cpp:2813
speckley::SpeckleyDomain::m_numDim
int m_numDim
Definition: speckley/src/SpeckleyDomain.h:742
speckley::Brick::assembleIntegrateWorker
void assembleIntegrateWorker(std::vector< Scalar > &integrals, const escript::Data &arg) const
Definition: speckley/src/Brick.cpp:1427
ripley::BYTEORDER_NATIVE
Definition: ripley/src/system_dep.h:45
ripley::byte_swap32
char * byte_swap32(char *val)
Definition: ripley/src/system_dep.h:106
ripley::Brick::getNumNodes
virtual dim_t getNumNodes() const
returns the number of nodes per MPI rank
Definition: ripley/src/Brick.h:397
ripley::Brick::getNumDOFInAxis
virtual dim_t getNumDOFInAxis(unsigned axis) const
Definition: ripley/src/Brick.h:390
ripley::ReaderParameters::byteOrder
int byteOrder
byte order in the file (used by binary reader only)
Definition: ripley/src/RipleyDomain.h:91
ripley::RipleyDomain::m_diracPointNodeIDs
IndexVector m_diracPointNodeIDs
Definition: ripley/src/RipleyDomain.h:776
ripley::ReaderParameters::numValues
std::vector< dim_t > numValues
the number of values to read from file
Definition: ripley/src/RipleyDomain.h:84
ripley::Brick::m_offset
dim_t m_offset[3]
first node on this rank is at (offset0,offset1,offset2) in global mesh
Definition: ripley/src/Brick.h:325
speckley::SpeckleyDomain::Print_Mesh_Info
virtual void Print_Mesh_Info(bool full=false) const
writes information about the mesh to standard output
Definition: speckley/src/SpeckleyDomain.cpp:687
ripley::ReducedNodes
Definition: Ripley.h:64
Block2::outbuff
double * outbuff
Definition: blocktools.h:275
ripley::Brick::readBinaryGridFromZipped
virtual void readBinaryGridFromZipped(escript::Data &out, std::string filename, const ReaderParameters &params) const
reads grid data from a compressed raw binary file into a Data object
Definition: ripley/src/Brick.cpp:621
escript::Data::getDataPointSize
int getDataPointSize() const
Return the size of the data point. It is the product of the data point shape dimensions.
Definition: Data.cpp:1363
ripley::Brick::dump
void dump(const std::string &filename) const
dumps the mesh to a file with the given name
Definition: ripley/src/Brick.cpp:1047
speckley::ReaderParameters::first
std::vector< dim_t > first
the (global) offset into the data object to start writing into
Definition: speckley/src/SpeckleyDomain.h:65
Block2::populateDimsTable
void populateDimsTable()
Definition: blocktools2.cpp:164
speckley::Brick::interpolateFromCorners
void interpolateFromCorners(escript::Data &out) const
Definition: speckley/src/Brick.cpp:922
escript::FunctionSpace
Definition: FunctionSpace.h:45
ripley::Brick::writeBinaryGridImpl
void writeBinaryGridImpl(const escript::Data &in, const std::string &filename, int byteOrder) const
Definition: ripley/src/Brick.cpp:961
speckley::Brick::reduceElements
virtual void reduceElements(escript::Data &out, const escript::Data &in) const
interpolates from Element -> ReducedElement
Definition: speckley/src/Brick.cpp:1734
ripley::Brick::createAssembler
virtual Assembler_ptr createAssembler(std::string type, const DataMap &options) const
Definition: ripley/src/Brick.cpp:3961
ripley::RipleyDomain::MPIBarrier
virtual void MPIBarrier() const
if compiled for MPI then executes an MPI_Barrier, else does nothing
Definition: ripley/src/RipleyDomain.h:152
speckley::Brick::integral_order4
void integral_order4(std::vector< Scalar > &, const escript::Data &) const
Definition: BrickIntegrals.cpp:94
ripley::Brick::m_faceOffset
IndexVector m_faceOffset
Definition: ripley/src/Brick.h:333
speckley::Brick::interpolateNodesOnElements
virtual void interpolateNodesOnElements(escript::Data &out, const escript::Data &in, bool reduced) const
interpolates data on nodes in 'in' onto elements in 'out'
Definition: speckley/src/Brick.cpp:1785
escript::Data::getFunctionSpace
const FunctionSpace & getFunctionSpace() const
Return the function space.
Definition: Data.h:461
message::tag
int tag
Definition: blocktools.h:72
ripley::Brick::m_NE
dim_t m_NE[3]
number of elements for this rank in each dimension including shared
Definition: ripley/src/Brick.h:316
escript::FileWriter::openFile
bool openFile(std::string filename, size_t initialSize=0, bool binary=false, bool append=false)
Definition: FileWriter.h:71
speckley::probeInterpolationAcross
bool probeInterpolationAcross(int fsType_source, const escript::AbstractDomain &domain, int fsType_target, int dim)
Definition: CrossDomainCoupler.cpp:30
Block2::inbuff
double * inbuff
Definition: blocktools.h:274
escript::Distribution
Definition: Distribution.h:42
ripley::Brick::getGridParameters
virtual boost::python::tuple getGridParameters() const
returns the tuple (origin, spacing, number_of_elements)
Definition: ripley/src/Brick.h:375
speckley::Brick::getNumDataPointsGlobal
virtual dim_t getNumDataPointsGlobal() const
returns the number of data points summed across all MPI processes
Definition: speckley/src/Brick.h:405
ripley::Brick::m_nodeDistribution
IndexVector m_nodeDistribution
Definition: ripley/src/Brick.h:342
ripley::Brick::getNumDataPointsGlobal
virtual dim_t getNumDataPointsGlobal() const
returns the number of data points summed across all MPI processes
Definition: ripley/src/Brick.h:363
ripley::Brick::Brick
Brick(dim_t n0, dim_t n1, dim_t n2, double x0, double y0, double z0, double x1, double y1, double z1, int d0=-1, int d1=-1, int d2=-1, const std::vector< double > &points=std::vector< double >(), const std::vector< int > &tags=std::vector< int >(), const TagMap &tagnamestonums=TagMap(), escript::SubWorld_ptr w=escript::SubWorld_ptr())
creates a hexagonal mesh with n0 x n1 x n2 elements over the brick [x0,x1] x [y0,y1] x [z0,...
Definition: ripley/src/Brick.cpp:86
speckley::BYTEORDER_NATIVE
Definition: speckley/src/system_dep.h:46
ripley::RipleyDomain::m_nodeTags
std::vector< int > m_nodeTags
Definition: ripley/src/RipleyDomain.h:772
speckley::Brick::integral_order7
void integral_order7(std::vector< Scalar > &, const escript::Data &) const
Definition: BrickIntegrals.cpp:181
speckley::Brick::readNcGrid
virtual void readNcGrid(escript::Data &out, std::string filename, std::string varname, const ReaderParameters &params) const
reads grid data from a netCDF file into a Data object
Definition: speckley/src/Brick.cpp:416
speckley
Definition: AbstractAssembler.cpp:17
speckley::Brick::m_NN
dim_t m_NN[3]
number of nodes for this rank in each dimension
Definition: speckley/src/Brick.h:389
ripley::DATATYPE_FLOAT32
Definition: ripley/src/system_dep.h:59
ripley::RankVector
std::vector< int > RankVector
Definition: Ripley.h:57
paso::util::copy
void copy(dim_t N, double *out, const double *in)
out = in
Definition: PasoUtil.h:110
speckley::indexOfMax
int indexOfMax(dim_t a, dim_t b, dim_t c)
Definition: speckley/src/Brick.cpp:67
speckley::SpeckleyDomain::setTagMap
virtual void setTagMap(const std::string &name, int tag)
sets a map from a clear tag name to a tag key
Definition: speckley/src/SpeckleyDomain.h:203
Block2::getOutBuffer
double * getOutBuffer(unsigned char subx, unsigned char suby)
Definition: blocktools2.cpp:99
escript::Data
Data represents a collection of datapoints.
Definition: Data.h:62
speckley::SpeckleyDomain::m_elementTags
std::vector< int > m_elementTags
Definition: speckley/src/SpeckleyDomain.h:747
ripley::RipleyDomain
RipleyDomain extends the AbstractContinuousDomain interface for the Ripley library and is the base cl...
Definition: ripley/src/RipleyDomain.h:112
paso::util::l2
double l2(dim_t n, const double *x, escript::JMPI mpiinfo)
returns the global L2 norm of x
Definition: PasoUtil.cpp:524
paso::nz
static dim_t nz
Definition: SparseMatrix_saveHB.cpp:48
ripley::RipleyDomain::m_numDim
int m_numDim
Definition: ripley/src/RipleyDomain.h:768
INDEX3
#define INDEX3(_X1_, _X2_, _X3_, _N1_, _N2_)
Definition: index.h:23
ripley::Brick::m_NN
dim_t m_NN[3]
number of nodes for this rank in each dimension
Definition: ripley/src/Brick.h:322
Block2::outbuffptr
double * outbuffptr[9]
Definition: blocktools.h:286
speckley::Brick::m_offset
dim_t m_offset[3]
first node on this rank is at (offset0,offset1,offset2) in global mesh
Definition: speckley/src/Brick.h:392
escript::DataTypes::dim_t
index_t dim_t
Definition: DataTypes.h:87
escript::DataTypes::ShapeType
std::vector< int > ShapeType
The shape of a single datapoint.
Definition: DataTypes.h:65
speckley::ReaderParameters::reverse
std::vector< int > reverse
if non-zero, values are written from last index to first index
Definition: speckley/src/SpeckleyDomain.h:72
speckley::Brick::m_faceCount
dim_t m_faceCount[6]
number of face elements per edge (left, right, bottom, top, front, back)
Definition: speckley/src/Brick.h:395
speckley::byte_swap64
char * byte_swap64(char *val)
Definition: speckley/src/system_dep.h:114
ripley::Brick::assembleCoordinates
virtual void assembleCoordinates(escript::Data &arg) const
populates the data object 'arg' with the node coordinates
Definition: ripley/src/Brick.cpp:1680
escript::AbstractSystemMatrix
Base class for escript system matrices.
Definition: AbstractSystemMatrix.h:53
speckley::DATATYPE_FLOAT32
Definition: speckley/src/system_dep.h:60
speckley::SpeckleyDomain::m_mpiInfo
escript::JMPI m_mpiInfo
Definition: speckley/src/SpeckleyDomain.h:744
escript::Data::getSampleDataRW
DataTypes::real_t * getSampleDataRW(DataTypes::RealVectorType::size_type sampleNo, DataTypes::real_t dummy=0)
Return the sample data for the given sample no. Please do not use this unless you NEED to access samp...
Definition: Data.h:1940
ripley::Brick::write
virtual void write(const std::string &filename) const
writes the current mesh to a file with the given name
Definition: ripley/src/Brick.cpp:1042
ripley::readBinaryGridFromZipped
escript::Data readBinaryGridFromZipped(std::string filename, escript::FunctionSpace fs, const object &pyShape, double fill, int byteOrder, int dataType, const object &pyFirst, const object &pyNum, const object &pyMultiplier, const object &pyReverse)
Definition: ripleycpp.cpp:86
speckley::Brick::getNumElements
virtual dim_t getNumElements() const
returns the number of elements per MPI rank
Definition: speckley/src/Brick.h:440
speckley::Brick::write
virtual void write(const std::string &filename) const
writes the current mesh to a file with the given name
Definition: speckley/src/Brick.cpp:1067
escript::DataTypes::noValues
int noValues(const ShapeType &shape)
Calculate the number of values in a datapoint with the given shape.
Definition: DataTypes.cpp:89
ripley::Brick::m_length
double m_length[3]
side lengths of domain
Definition: ripley/src/Brick.h:307
speckley::SpeckleyDomain::getMPISize
virtual int getMPISize() const
returns the number of processors used for this domain
Definition: speckley/src/SpeckleyDomain.h:120
speckley::Brick::createAssembler
Assembler_ptr createAssembler(std::string type, const DataMap &constants) const
Definition: speckley/src/Brick.cpp:2864
speckley::Brick
Brick is the 3-dimensional implementation of a SpeckleyDomain.
Definition: speckley/src/Brick.h:43
speckley::factorise
void factorise(std::vector< int > &factors, int product)
Definition: speckley/src/domainhelpers.cpp:40
paso::SystemMatrixPattern
Definition: SystemMatrixPattern.h:55
ripley::Brick::ownSample
virtual bool ownSample(int fsType, index_t id) const
returns true if this rank owns the sample id.
Definition: ripley/src/Brick.cpp:1223
ripley::readBinaryGrid
escript::Data readBinaryGrid(std::string filename, escript::FunctionSpace fs, const object &pyShape, double fill, int byteOrder, int dataType, const object &pyFirst, const object &pyNum, const object &pyMultiplier, const object &pyReverse)
Definition: ripleycpp.cpp:61
speckley::Brick::m_nodeDistribution
IndexVector m_nodeDistribution
Definition: speckley/src/Brick.h:404
speckley::SpeckleyDomain
SpeckleyDomain extends the AbstractContinuousDomain interface for the Speckley library and is the bas...
Definition: speckley/src/SpeckleyDomain.h:95
BlockGrid
Definition: blocktools.h:80
ripley::ReaderParameters::multiplier
std::vector< int > multiplier
Definition: ripley/src/RipleyDomain.h:87
ripley::Brick::m_origin
double m_origin[3]
origin of domain
Definition: ripley/src/Brick.h:304
Block2::copyFromBuffer
void copyFromBuffer(unsigned char buffid, double *dest)
Definition: blocktools2.cpp:344
Block2::sy
size_t sy
Definition: blocktools.h:281
speckley::ReducedElements
Definition: Speckley.h:75
speckley::Brick::assembleIntegrate
virtual void assembleIntegrate(std::vector< real_t > &integrals, const escript::Data &arg) const
copies the integrals of the function defined by 'arg' into 'integrals'
Definition: speckley/src/Brick.cpp:1412
ripley::readNcGrid
escript::Data readNcGrid(std::string filename, std::string varname, escript::FunctionSpace fs, const object &pyShape, double fill, const object &pyFirst, const object &pyNum, const object &pyMultiplier, const object &pyReverse)
Definition: ripleycpp.cpp:115
RANK_BELOW
#define RANK_BELOW(__rank__)
escript::Data::isDataPointShapeEqual
bool isDataPointShapeEqual(int rank, const int *dimensions) const
Returns true if the shape matches the vector (dimensions[0],..., dimensions[rank-1])....
Definition: Data.h:553
speckley::SpeckleyDomain::MPIBarrier
virtual void MPIBarrier() const
if compiled for MPI then executes an MPI_Barrier, else does nothing
Definition: speckley/src/SpeckleyDomain.h:132
speckley::Brick::integral_order8
void integral_order8(std::vector< Scalar > &, const escript::Data &) const
Definition: BrickIntegrals.cpp:210
ripley::Brick::getDofOfNode
virtual dim_t getDofOfNode(dim_t node) const
Definition: ripley/src/Brick.h:358
Block2::copyToBuffer
void copyToBuffer(unsigned char buffid, double *src)
Definition: blocktools2.cpp:316
BlockGrid2::getNID
neighbourID_t getNID(coord_t x, coord_t y) const
Definition: blocktools2.cpp:26
Block2::getInBuffer
double * getInBuffer(unsigned char subx, unsigned char suby)
Definition: blocktools2.cpp:109
ripley::doublyLink
void doublyLink(std::vector< ripley::IndexVector > &va, std::vector< ripley::IndexVector > &vb, int a, int b)
Definition: ripley/src/domainhelpers.h:60
Block2::flatoffsets
size_t flatoffsets[9]
Definition: blocktools.h:277
speckley::Brick::writeBinaryGrid
virtual void writeBinaryGrid(const escript::Data &in, std::string filename, int byteOrder, int dataType) const
writes a Data object to a file in raw binary format
Definition: speckley/src/Brick.cpp:983
speckley::Brick::setToSize
virtual void setToSize(escript::Data &out) const
copies the size of samples into out. The actual function space to be considered is defined by out....
Definition: speckley/src/Brick.cpp:1263
messvec
std::vector< message > messvec
Definition: blocktools.h:77
speckley::Brick::~Brick
~Brick()
Destructor.
Definition: speckley/src/Brick.cpp:219
ripley::Brick::randomFillWorker
virtual escript::Data randomFillWorker(const escript::DataTypes::ShapeType &shape, long seed, const boost::python::tuple &filter) const
ripley::FaceElements
Definition: Ripley.h:67
escript::Data::numSamplesEqual
bool numSamplesEqual(int numDataPointsPerSample, int numSamples) const
Returns true if the number of data points per sample and the number of samples match the respective a...
Definition: Data.h:541
ripley::Brick::nodesToDOF
virtual void nodesToDOF(escript::Data &out, const escript::Data &in) const
converts data on nodes in 'in' to degrees of freedom in 'out'
Definition: ripley/src/Brick.cpp:2499
speckley::Brick::getDescription
virtual std::string getDescription() const
returns a description for this domain
Definition: speckley/src/Brick.cpp:227
ripley::RipleyDomain::getDecompositionPolicy
static DecompositionPolicy getDecompositionPolicy()
Definition: ripley/src/RipleyDomain.cpp:56
ripley::Brick::LameAssembler3D
friend class LameAssembler3D
Definition: ripley/src/Brick.h:55
speckley::RipleyCoupler
Definition: CrossDomainCoupler.h:39
ripley::Brick::Print_Mesh_Info
virtual void Print_Mesh_Info(const bool full=false) const
writes information about the mesh to standard output
Definition: ripley/src/Brick.cpp:1662
speckley::DegreesOfFreedom
Definition: Speckley.h:70
Block2::Block2
Block2(size_t sx, size_t sy, size_t inset, size_t xmidlen, size_t ymidlen, unsigned int dpp=1)
Definition: blocktools2.cpp:245
speckley::Brick::integral_order9
void integral_order9(std::vector< Scalar > &, const escript::Data &) const
Definition: BrickIntegrals.cpp:239
ripley::RipleyDomain::getContinuousFunctionCode
virtual int getContinuousFunctionCode() const
returns a continuous FunctionSpace code
Definition: ripley/src/RipleyDomain.h:397
ripley::RipleyDomain::updateTagsInUse
void updateTagsInUse(int fsType) const
Definition: ripley/src/RipleyDomain.cpp:1250
ripley::RipleyDomain::setTagMap
virtual void setTagMap(const std::string &name, int tag)
sets a map from a clear tag name to a tag key
Definition: ripley/src/RipleyDomain.h:223
ripley::Brick::writeBinaryGrid
virtual void writeBinaryGrid(const escript::Data &in, std::string filename, int byteOrder, int dataType) const
writes a Data object to a file in raw binary format
Definition: ripley/src/Brick.cpp:940
speckley::Elements
Definition: Speckley.h:74
speckley::SpeckleyDomain::updateTagsInUse
void updateTagsInUse(int fsType) const
Definition: speckley/src/SpeckleyDomain.cpp:839
ripley::ReaderParameters
Structure that wraps parameters for the grid reading routines.
Definition: ripley/src/RipleyDomain.h:79
speckley::Brick::interpolateNodesOnElementsWorker
void interpolateNodesOnElementsWorker(escript::Data &out, const escript::Data &in, bool reduced) const
Definition: speckley/src/Brick.cpp:1797
speckley::Brick::m_dx
double m_dx[3]
grid spacings / cell sizes of domain
Definition: speckley/src/Brick.h:380
speckley::Brick::assembleCoordinates
virtual void assembleCoordinates(escript::Data &arg) const
populates the data object 'arg' with the node coordinates
Definition: speckley/src/Brick.cpp:1327
Block2::buffoffsets
size_t buffoffsets[9]
Definition: blocktools.h:276
MPI_DOUBLE
#define MPI_DOUBLE
Definition: EsysMPI.h:45
Block2::xmidlen
size_t xmidlen
Definition: blocktools.h:283
escript::SubWorld_ptr
boost::shared_ptr< SubWorld > SubWorld_ptr
Definition: SubWorld.h:157
ripley::Brick::m_dofMap
IndexVector m_dofMap
Definition: ripley/src/Brick.h:345
speckley::Brick::DefaultAssembler3D
friend class DefaultAssembler3D
Definition: speckley/src/Brick.h:57
speckley::Brick::integral_order10
void integral_order10(std::vector< Scalar > &, const escript::Data &) const
Definition: BrickIntegrals.cpp:268
ripley::Brick::getDiagonalIndices
virtual IndexVector getDiagonalIndices(bool upperOnly) const
returns the indices of the occupied matrix diagonals
Definition: ripley/src/Brick.cpp:2473
speckley::Brick::getNumNodes
virtual dim_t getNumNodes() const
returns the number of nodes per MPI rank
Definition: speckley/src/Brick.h:434
ripley::Brick
Brick is the 3-dimensional implementation of a RipleyDomain.
Definition: ripley/src/Brick.h:39
speckley::ReaderParameters::dataType
int dataType
data type in the file (used by binary reader only)
Definition: speckley/src/SpeckleyDomain.h:76
Block2::getBuffSize
size_t getBuffSize(unsigned char subx, unsigned char suby)
Definition: blocktools2.cpp:119
ripley::Brick::getOwnerVector
virtual RankVector getOwnerVector(int fsType) const
returns a vector of rank numbers where vec[i]=n means that rank n 'owns' element/face element i.
Definition: ripley/src/Brick.cpp:1276
ripley::Brick::getNumFaceElements
virtual dim_t getNumFaceElements() const
returns the number of face elements on current MPI rank
Definition: ripley/src/Brick.h:409
ripley::Brick::getNumDOF
virtual dim_t getNumDOF() const
returns the number of degrees of freedom per MPI rank
Definition: ripley/src/Brick.h:384
RANK_LEFT
#define RANK_LEFT(__rank__)
escript::DataTypes::index_t
int index_t
type for array/matrix indices used both globally and on each rank
Definition: DataTypes.h:82
ripley::IndexVector
std::vector< index_t > IndexVector
Definition: Ripley.h:55
RANK_FRONT
#define RANK_FRONT(__rank__)
ripley::ReaderParameters::reverse
std::vector< int > reverse
if non-zero, values are written from last index to first index
Definition: ripley/src/RipleyDomain.h:89
ripley::Brick::findNode
dim_t findNode(const double *coords) const
finds the node that the given point coordinates belong to
Definition: ripley/src/Brick.cpp:3902
ripley::Brick::getNumElements
virtual dim_t getNumElements() const
returns the number of elements per MPI rank
Definition: ripley/src/Brick.h:403
speckley::Brick::m_NE
dim_t m_NE[3]
number of elements for this rank in each dimension including shared
Definition: speckley/src/Brick.h:386
speckley::Brick::randomFill
virtual escript::Data randomFill(const escript::DataTypes::ShapeType &shape, const escript::FunctionSpace &what, long seed, const boost::python::tuple &filter) const
Returns a Data object filled with random data passed through filter.
Definition: speckley/src/Brick.cpp:2777
speckley::Brick::m_NX
int m_NX[3]
number of spatial subdivisions
Definition: speckley/src/Brick.h:383
speckley::ReaderParameters::multiplier
std::vector< int > multiplier
Definition: speckley/src/SpeckleyDomain.h:70
ripley::RipleyDomain::addPoints
void addPoints(const std::vector< double > &coords, const std::vector< int > &tags)
Definition: ripley/src/RipleyDomain.cpp:1793
ripley::Brick::m_nodeId
IndexVector m_nodeId
Definition: ripley/src/Brick.h:337
speckley::Brick::interpolateAcross
virtual void interpolateAcross(escript::Data &target, const escript::Data &source) const
interpolates data given on source onto target where source and target are given on different domains
Definition: speckley/src/Brick.cpp:2888
ripley::Brick::~Brick
~Brick()
Destructor.
Definition: ripley/src/Brick.cpp:274
Block2::used
bool used[9]
Definition: blocktools.h:278
ripley::Brick::interpolateNodesOnElements
virtual void interpolateNodesOnElements(escript::Data &out, const escript::Data &in, bool reduced) const
interpolates data on nodes in 'in' onto (reduced) elements in 'out'
Definition: ripley/src/Brick.cpp:3267
ripley::ReducedFaceElements
Definition: Ripley.h:68
ripley::Brick::getFirstInDim
virtual dim_t getFirstInDim(unsigned axis) const
Definition: ripley/src/Brick.h:416
ripley::indexOfMax
int indexOfMax(dim_t a, dim_t b, dim_t c)
Definition: ripley/src/Brick.cpp:73
Block2::setUsed
void setUsed(unsigned char buffid)
Definition: blocktools2.cpp:214
escript::FunctionSpace::getTypeCode
int getTypeCode() const
Returns the function space type code.
Definition: FunctionSpace.cpp:93
ripley::Brick::populateDofMap
void populateDofMap()
Definition: ripley/src/Brick.cpp:3053
speckley::Brick::Print_Mesh_Info
virtual void Print_Mesh_Info(const bool full=false) const
writes information about the mesh to standard output
Definition: speckley/src/Brick.cpp:1309
speckley::SpeckleyDomain::getMPIRank
virtual int getMPIRank() const
returns the MPI rank of this processor
Definition: speckley/src/SpeckleyDomain.h:126
ripley::Brick::m_elementId
IndexVector m_elementId
Definition: ripley/src/Brick.h:338
escript::function
FunctionSpace function(const AbstractDomain &domain)
Return a function FunctionSpace.
Definition: FunctionSpaceFactory.cpp:53
Block
Definition: blocktools.h:117
ripley::Brick::populateSampleIds
void populateSampleIds()
Definition: ripley/src/Brick.cpp:2740
speckley::ReaderParameters
Structure that wraps parameters for the grid reading routines.
Definition: speckley/src/SpeckleyDomain.h:62
speckley::Brick::m_origin
double m_origin[3]
origin of domain
Definition: speckley/src/Brick.h:374
ripley::Brick::getConnections
virtual std::vector< IndexVector > getConnections(bool includeShared=false) const
returns occupied matrix column indices for all matrix rows
Definition: ripley/src/Brick.cpp:2989
blocktools.h
MPI_Request
int MPI_Request
Definition: EsysMPI.h:41
ripley::Brick::readBinaryGrid
virtual void readBinaryGrid(escript::Data &out, std::string filename, const ReaderParameters &params) const
reads grid data from a raw binary file into a Data object
Definition: ripley/src/Brick.cpp:645
speckley::Points
Definition: Speckley.h:78
MPI_Comm
int MPI_Comm
Definition: EsysMPI.h:40
escript::DataTypes::real_t_eps
real_t real_t_eps()
Returns the machine epsilon for the real_t type.
Definition: DataTypes.h:120
paso::Connector_ptr
boost::shared_ptr< Connector > Connector_ptr
Definition: Coupler.h:48
Block2::displayBlock
void displayBlock(unsigned char subx, unsigned char suby, bool out)
Definition: blocktools2.cpp:287
paso::Pattern_ptr
boost::shared_ptr< Pattern > Pattern_ptr
Definition: Pattern.h:48
BlockGrid2::BlockGrid2
BlockGrid2(coord_t maxx, coord_t maxy)
Definition: blocktools2.cpp:22
getTag2
int getTag2(unsigned char sourcex, unsigned char sourcey, unsigned char targetx, unsigned char targety)
Definition: blocktools2.cpp:363
ripley::Brick::getDescription
virtual std::string getDescription() const
returns a description for this domain
Definition: ripley/src/Brick.cpp:278
neighbourID_t
int neighbourID_t
Definition: blocktools.h:60
ripley::RipleyDomain::getMPISize
virtual int getMPISize() const
returns the number of processors used for this domain
Definition: ripley/src/RipleyDomain.h:140
escript::Data::actsExpanded
bool actsExpanded() const
Return true if this Data is expanded or resolves to expanded. That is, if it has a separate value for...
Definition: Data.cpp:1121
speckley::Brick::assembleGradient
virtual void assembleGradient(escript::Data &out, const escript::Data &in) const
computes the gradient of 'in' and puts the result in 'out'
Definition: speckley/src/Brick.cpp:1353
escript::AbstractDomain
Base class for all escript domains.
Definition: AbstractDomain.h:56
BlockGrid2::xmax
coord_t xmax
Definition: blocktools.h:219
speckley::Brick::readBinaryGridImpl
void readBinaryGridImpl(escript::Data &out, const std::string &filename, const ReaderParameters &params) const
Definition: speckley/src/Brick.cpp:609
S
#define S(_J_, _I_)
Definition: ShapeFunctions.cpp:134
speckley::ReaderParameters::numValues
std::vector< dim_t > numValues
the number of values to read from file
Definition: speckley/src/SpeckleyDomain.h:67
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dim_t m_gNE[3]
total number of elements in each dimension
Definition: ripley/src/Brick.h:301
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Definition: FileWriter.h:221
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unsigned char destbuffid
Definition: blocktools.h:74
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complex data type
Definition: DataTypes.h:76
ripley::Brick::setToSize
virtual void setToSize(escript::Data &out) const
copies the size of samples into out. The actual function space to be considered is defined by out....
Definition: ripley/src/Brick.cpp:1565
escript::Scalar
Data Scalar(double value, const FunctionSpace &what, bool expanded)
A collection of factory functions for creating Data objects which contain data points of various shap...
Definition: DataFactory.cpp:60
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Definition: blocktools.h:73
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std::map< std::string, escript::Data > DataMap
Definition: speckley/src/domainhelpers.h:35
ripley::ReaderParameters::dataType
int dataType
data type in the file (used by binary reader only)
Definition: ripley/src/RipleyDomain.h:93
speckley::Brick::probeInterpolationAcross
virtual bool probeInterpolationAcross(int, const escript::AbstractDomain &, int) const
determines whether interpolation from source to target is possible
Definition: speckley/src/Brick.cpp:2877
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size_t ymidlen
Definition: blocktools.h:284
speckley::Brick::interpolateElementsOnNodes
virtual void interpolateElementsOnNodes(escript::Data &out, const escript::Data &in) const
interpolates data on elements in 'in' onto nodes in 'out'
Definition: speckley/src/Brick.cpp:1622
Block2::~Block2
~Block2()
Definition: blocktools2.cpp:158
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#define ESYS_ASSERT(a, b)
EsysAssert is a MACRO that will throw an exception if the boolean condition specified is false.
Definition: Assert.h:77
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void copyAllToBuffer(double *src)
Definition: blocktools2.cpp:219
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Definition: FileWriter.h:196
escript::ValueError
An exception class that signals an invalid argument value.
Definition: EsysException.h:99
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#define globalNodeId(x, y, z)
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Definition: blocktools.h:282
speckley::Brick::readBinaryGrid
virtual void readBinaryGrid(escript::Data &out, std::string filename, const ReaderParameters &params) const
reads grid data from a raw binary file into a Data object
Definition: speckley/src/Brick.cpp:588
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const double point_locations[][11]
Definition: Speckley.h:82
ripley::Brick::interpolateNodesOnFaces
virtual void interpolateNodesOnFaces(escript::Data &out, const escript::Data &in, bool reduced) const
interpolates data on nodes in 'in' onto (reduced) face elements in 'out'
Definition: ripley/src/Brick.cpp:3285
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SpeckleyException exception class.
Definition: SpeckleyException.h:40
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char * byte_swap32(char *val)
Definition: speckley/src/system_dep.h:107
MATRIX_FORMAT_DEFAULT
#define MATRIX_FORMAT_DEFAULT
Definition: Paso.h:60
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Definition: blocktools.h:285
ripley::RipleyDomain::Print_Mesh_Info
virtual void Print_Mesh_Info(bool full=false) const
writes information about the mesh to standard output
Definition: ripley/src/RipleyDomain.cpp:838
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IndexVector m_dofId
vector of sample reference identifiers
Definition: ripley/src/Brick.h:336
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coord_t ymax
Definition: blocktools.h:220
ripley::DECOMP_EXPAND
Definition: ripley/src/RipleyDomain.h:71
speckley::Brick::m_nodeId
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Definition: speckley/src/Brick.h:400
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static const ShapeType scalarShape
Use this instead of creating empty shape objects for scalars.
Definition: DataTypes.h:69
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virtual void assembleIntegrate(std::vector< real_t > &integrals, const escript::Data &arg) const
copies the integrals of the function defined by 'arg' into 'integrals'
Definition: ripley/src/Brick.cpp:2204
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void generateInNeighbours(coord_t blockx, coord_t blocky, messvec &v)
Definition: blocktools2.cpp:33
speckley::Brick::ownSample
virtual bool ownSample(int fsType, index_t id) const
returns true if this rank owns the sample id.
Definition: speckley/src/Brick.cpp:1241
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Definition: blocktools2.cpp:232
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Definition: blocktools.h:61
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Definition: blocktools2.cpp:66
ripley::Brick::assembleGradient
virtual void assembleGradient(escript::Data &out, const escript::Data &in) const
computes the gradient of 'in' and puts the result in 'out'
Definition: ripley/src/Brick.cpp:1706
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Definition: Speckley.h:72