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17 #ifndef __RIPLEY_MULTIBRICK_H__
18 #define __RIPLEY_MULTIBRICK_H__
20 #include <ripley/Brick.h>
30 template<
class Scalar>
friend class DefaultAssembler3D;
31 friend class WaveAssembler3D;
32 friend class LameAssembler3D;
42 MultiBrick(
dim_t n0,
dim_t n1,
dim_t n2,
double x0,
double y0,
double z0,
43 double x1,
double y1,
double z1,
int d0=-1,
int d1=-1,
int d2=-1,
44 const std::vector<double>& points = std::vector<double>(),
45 const std::vector<int>& tags = std::vector<int>(),
48 unsigned int subdivisions = 1
70 void validateInterpolationAcross(
int fsType_source,
77 virtual std::string getDescription()
const;
89 void dump(
const std::string& filename)
const;
107 std::string filename,
108 int byteOrder,
int dataType)
const;
114 const dim_t* borrowSampleReferenceIDs(
int fsType)
const;
120 virtual bool ownSample(
int fsType,
index_t id)
const;
142 virtual void Print_Mesh_Info(
const bool full=
false)
const;
148 virtual unsigned int getNumSubdivisionsPerElement()
const {
return m_subdivisions; }
155 virtual const dim_t* getNumFacesPerBoundary()
const {
return m_faceCount; }
161 virtual IndexVector getNodeDistribution()
const {
return m_nodeDistribution; }
167 virtual const int* getNumSubdivisionsPerDim()
const {
return m_NX; }
174 virtual RankVector getOwnerVector(
int fsType)
const;
177 virtual IndexVector getDiagonalIndices(
bool upperOnly)
const;
187 virtual void populateSampleIds();
188 virtual std::vector<IndexVector> getConnections(
bool includeShared)
const;
190 dim_t findNode(
const double *coords)
const;
192 const unsigned int m_subdivisions;
194 template <
typename S>
196 template <
typename S>
199 template <
typename S>
201 template <
typename S>
204 template <
typename S>
206 template <
typename S>
217 #endif // __RIPLEY_MULTIBRICK_H__
virtual void readNcGrid(escript::Data &out, std::string filename, std::string varname, const ReaderParameters ¶ms) const
reads grid data from a netCDF file into a Data object
Definition: ripley/src/Brick.cpp:472
int getNumDataPointsPerSample() const
Return the number of data points per sample.
Definition: Data.h:530
bool isComplex() const
True if components of this data are stored as complex.
Definition: Data.cpp:1163
Definition: ripley/src/AbstractAssembler.h:24
virtual void interpolateNodesToNodesFiner(const escript::Data &source, escript::Data &target, const MultiBrick &other) const
Definition: MultiBrick.cpp:141
escript::JMPI m_mpiInfo
Definition: ripley/src/RipleyDomain.h:770
dim_t m_faceCount[6]
number of face elements per edge (left, right, bottom, top, front, back)
Definition: ripley/src/Brick.h:328
MPI_Comm getMPIComm() const
returns the MPI communicator
Definition: ripley/src/RipleyDomain.h:168
double real_t
type of all real-valued scalars in escript
Definition: DataTypes.h:73
int m_NX[3]
number of spatial subdivisions
Definition: ripley/src/Brick.h:313
void dump(const std::string &filename) const
dumps the mesh to a file with the given name
Definition: MultiBrick.cpp:724
void requireWrite()
Ensures data is ready for write access. This means that the data will be resolved if lazy and will be...
Definition: Data.cpp:1242
std::vector< int > m_elementTags
Definition: ripley/src/RipleyDomain.h:773
void validateInterpolationAcross(int fsType_source, const escript::AbstractDomain &domain, int fsType_target) const
Checks that the given interpolation is possible, throw RipleyExceptions if not.
Definition: MultiBrick.cpp:108
#define INDEX4(_X1_, _X2_, _X3_, _X4_, _N1_, _N2_, _N3_)
Definition: index.h:25
virtual double getLocalCoordinate(index_t index, int dim) const
returns the index'th coordinate value in given dimension for this rank
Definition: ripley/src/Brick.h:368
IndexVector m_faceId
Definition: ripley/src/Brick.h:339
std::vector< int > m_faceTags
Definition: ripley/src/RipleyDomain.h:774
dim_t m_ownNE[3]
number of own elements for this rank in each dimension
Definition: ripley/src/Brick.h:319
#define INDEX2(_X1_, _X2_, _N1_)
Definition: index.h:21
RipleyException exception class.
Definition: RipleyException.h:40
const_Domain_ptr getDomain() const
Return the domain.
Definition: Data.h:473
std::map< std::string, int > TagMap
Definition: Ripley.h:58
#define RIPLEY_DLL_API
Definition: ripley/src/system_dep.h:19
const DataTypes::real_t * getSampleDataRO(DataTypes::RealVectorType::size_type sampleNo, DataTypes::real_t dummy=0) const
Return the sample data for the given sample no. Please do not use this unless you NEED to access samp...
Definition: Data.h:1975
double m_dx[3]
grid spacings / cell sizes of domain
Definition: ripley/src/Brick.h:310
void interpolateReducedToElementsFinerWorker(const escript::Data &source, escript::Data &target, const MultiBrick &other, S sentinel) const
Definition: MultiBrick.cpp:222
virtual bool operator==(const escript::AbstractDomain &other) const
equality operator
Definition: MultiBrick.cpp:677
virtual void interpolateAcross(escript::Data &target, const escript::Data &source) const
interpolates data given on source onto target where source and target are given on different domains
Definition: MultiBrick.cpp:596
virtual IndexVector getDiagonalIndices(bool upperOnly) const
returns the indices of the occupied matrix diagonals
Definition: MultiBrick.cpp:1103
virtual void populateSampleIds()
Definition: MultiBrick.cpp:1129
virtual void writeBinaryGrid(const escript::Data &in, std::string filename, int byteOrder, int dataType) const
writes a Data object to a file in raw binary format
Definition: MultiBrick.cpp:716
virtual void interpolateReducedToElementsFiner(const escript::Data &source, escript::Data &target, const MultiBrick &other) const
Definition: MultiBrick.cpp:204
const double * getLength() const
returns the lengths of the domain
Definition: ripley/src/Brick.h:221
virtual RankVector getOwnerVector(int fsType) const
returns a vector of rank numbers where vec[i]=n means that rank n 'owns' element/face element i.
Definition: MultiBrick.cpp:1427
virtual dim_t getNumNodes() const
returns the number of nodes per MPI rank
Definition: ripley/src/Brick.h:397
void interpolateElementsToElementsFinerWorker(const escript::Data &source, escript::Data &target, const MultiBrick &other, S sentinel) const
Definition: MultiBrick.cpp:540
IndexVector m_diracPointNodeIDs
Definition: ripley/src/RipleyDomain.h:776
void interpolateElementsToElementsCoarserWorker(const escript::Data &source, escript::Data &target, const MultiBrick &other, S sentinel) const
Definition: MultiBrick.cpp:462
dim_t m_offset[3]
first node on this rank is at (offset0,offset1,offset2) in global mesh
Definition: ripley/src/Brick.h:325
virtual void readBinaryGridFromZipped(escript::Data &out, std::string filename, const ReaderParameters ¶ms) const
reads grid data from a compressed raw binary file into a Data object
Definition: ripley/src/Brick.cpp:621
int getDataPointSize() const
Return the size of the data point. It is the product of the data point shape dimensions.
Definition: Data.cpp:1363
void dump(const std::string &filename) const
dumps the mesh to a file with the given name
Definition: ripley/src/Brick.cpp:1047
IndexVector m_faceOffset
Definition: ripley/src/Brick.h:333
const FunctionSpace & getFunctionSpace() const
Return the function space.
Definition: Data.h:461
dim_t m_NE[3]
number of elements for this rank in each dimension including shared
Definition: ripley/src/Brick.h:316
virtual void setToNormal(escript::Data &out) const
copies the surface normals at data points into out. The actual function space to be considered is def...
Definition: MultiBrick.cpp:810
virtual void interpolateNodesToElementsFiner(const escript::Data &source, escript::Data &target, const MultiBrick &other) const
Definition: MultiBrick.cpp:302
IndexVector m_nodeDistribution
Definition: ripley/src/Brick.h:342
virtual dim_t getNumDataPointsGlobal() const
returns the number of data points summed across all MPI processes
Definition: ripley/src/Brick.h:363
virtual std::string getDescription() const
returns a description for this domain
Definition: MultiBrick.cpp:672
std::vector< int > m_nodeTags
Definition: ripley/src/RipleyDomain.h:772
std::vector< int > RankVector
Definition: Ripley.h:57
void interpolateNodesToNodesFinerWorker(const escript::Data &source, escript::Data &target, const MultiBrick &other, S sentinel) const
Definition: MultiBrick.cpp:159
Data represents a collection of datapoints.
Definition: Data.h:62
static dim_t nz
Definition: SparseMatrix_saveHB.cpp:48
int m_numDim
Definition: ripley/src/RipleyDomain.h:768
#define INDEX3(_X1_, _X2_, _X3_, _N1_, _N2_)
Definition: index.h:23
dim_t m_NN[3]
number of nodes for this rank in each dimension
Definition: ripley/src/Brick.h:322
index_t dim_t
Definition: DataTypes.h:87
#define SECOND_QUAD
Definition: MultiBrick.cpp:25
DataTypes::real_t * getSampleDataRW(DataTypes::RealVectorType::size_type sampleNo, DataTypes::real_t dummy=0)
Return the sample data for the given sample no. Please do not use this unless you NEED to access samp...
Definition: Data.h:1940
virtual void readBinaryGridFromZipped(escript::Data &out, std::string filename, const ReaderParameters ¶ms) const
reads grid data from a compressed raw binary file into a Data object
Definition: MultiBrick.cpp:708
escript::Data readBinaryGridFromZipped(std::string filename, escript::FunctionSpace fs, const object &pyShape, double fill, int byteOrder, int dataType, const object &pyFirst, const object &pyNum, const object &pyMultiplier, const object &pyReverse)
Definition: ripleycpp.cpp:86
void interpolateReducedToReducedFinerWorker(const escript::Data &source, escript::Data &target, const MultiBrick &other, S sentinel) const
Definition: MultiBrick.cpp:276
double m_length[3]
side lengths of domain
Definition: ripley/src/Brick.h:307
const unsigned int m_subdivisions
Definition: MultiBrick.h:215
const dim_t * borrowSampleReferenceIDs(int fsType) const
returns the array of reference numbers for a function space type
Definition: MultiBrick.cpp:731
escript::Data readBinaryGrid(std::string filename, escript::FunctionSpace fs, const object &pyShape, double fill, int byteOrder, int dataType, const object &pyFirst, const object &pyNum, const object &pyMultiplier, const object &pyReverse)
Definition: ripleycpp.cpp:61
double m_origin[3]
origin of domain
Definition: ripley/src/Brick.h:304
escript::Data readNcGrid(std::string filename, std::string varname, escript::FunctionSpace fs, const object &pyShape, double fill, const object &pyFirst, const object &pyNum, const object &pyMultiplier, const object &pyReverse)
Definition: ripleycpp.cpp:115
virtual void readBinaryGrid(escript::Data &out, std::string filename, const ReaderParameters ¶ms) const
reads grid data from a raw binary file into a Data object
Definition: MultiBrick.cpp:700
~MultiBrick()
Destructor.
Definition: MultiBrick.cpp:103
virtual bool ownSample(int fsType, index_t id) const
returns true if this rank owns the sample id.
Definition: MultiBrick.cpp:757
virtual const dim_t * getNumElementsPerDim() const
returns the number of elements per MPI rank in each dimension
Definition: ripley/src/Brick.h:173
virtual void interpolateElementsToElementsCoarser(const escript::Data &source, escript::Data &target, const MultiBrick &other) const
Definition: MultiBrick.cpp:444
virtual void Print_Mesh_Info(const bool full=false) const
writes information about the mesh to standard output
Definition: MultiBrick.cpp:1086
void updateTagsInUse(int fsType) const
Definition: ripley/src/RipleyDomain.cpp:1250
virtual void setTagMap(const std::string &name, int tag)
sets a map from a clear tag name to a tag key
Definition: ripley/src/RipleyDomain.h:223
virtual void writeBinaryGrid(const escript::Data &in, std::string filename, int byteOrder, int dataType) const
writes a Data object to a file in raw binary format
Definition: ripley/src/Brick.cpp:940
void interpolateNodesToElementsFinerWorker(const escript::Data &source, escript::Data &target, const MultiBrick &other, S sentinel) const
Definition: MultiBrick.cpp:320
Structure that wraps parameters for the grid reading routines.
Definition: ripley/src/RipleyDomain.h:79
boost::shared_ptr< SubWorld > SubWorld_ptr
Definition: SubWorld.h:157
IndexVector m_dofMap
Definition: ripley/src/Brick.h:345
virtual void interpolateElementsToElementsFiner(const escript::Data &source, escript::Data &target, const MultiBrick &other) const
Definition: MultiBrick.cpp:522
Brick is the 3-dimensional implementation of a RipleyDomain.
Definition: ripley/src/Brick.h:39
virtual RankVector getOwnerVector(int fsType) const
returns a vector of rank numbers where vec[i]=n means that rank n 'owns' element/face element i.
Definition: ripley/src/Brick.cpp:1276
virtual dim_t getNumFaceElements() const
returns the number of face elements on current MPI rank
Definition: ripley/src/Brick.h:409
virtual void setToSize(escript::Data &out) const
copies the size of samples into out. The actual function space to be considered is defined by out....
Definition: MultiBrick.cpp:989
virtual dim_t getNumDOF() const
returns the number of degrees of freedom per MPI rank
Definition: ripley/src/Brick.h:384
int index_t
type for array/matrix indices used both globally and on each rank
Definition: DataTypes.h:82
std::vector< index_t > IndexVector
Definition: Ripley.h:55
Brick is the 3-dimensional implementation of a RipleyDomain.
Definition: MultiBrick.h:39
virtual dim_t getNumElements() const
returns the number of elements per MPI rank
Definition: ripley/src/Brick.h:403
virtual std::string functionSpaceTypeAsString(int fsType) const
returns a description for the given function space type code
Definition: ripley/src/RipleyDomain.cpp:123
IndexVector m_nodeId
Definition: ripley/src/Brick.h:337
virtual void interpolateNodesOnElements(escript::Data &out, const escript::Data &in, bool reduced) const
interpolates data on nodes in 'in' onto (reduced) elements in 'out'
Definition: ripley/src/Brick.cpp:3267
int indexOfMax(dim_t a, dim_t b, dim_t c)
Definition: ripley/src/Brick.cpp:73
int getTypeCode() const
Returns the function space type code.
Definition: FunctionSpace.cpp:93
void populateDofMap()
Definition: ripley/src/Brick.cpp:3053
IndexVector m_elementId
Definition: ripley/src/Brick.h:338
FunctionSpace function(const AbstractDomain &domain)
Return a function FunctionSpace.
Definition: FunctionSpaceFactory.cpp:53
Data Vector(double value, const FunctionSpace &what, bool expanded)
Return a Data object containing vector data-points. ie: rank 1 data-points.
Definition: DataFactory.cpp:96
static dim_t M
Definition: SparseMatrix_saveHB.cpp:48
virtual void readBinaryGrid(escript::Data &out, std::string filename, const ReaderParameters ¶ms) const
reads grid data from a raw binary file into a Data object
Definition: ripley/src/Brick.cpp:645
virtual const dim_t * getNumNodesPerDim() const
returns the number of nodes per MPI rank in each dimension
Definition: ripley/src/Brick.h:167
virtual int getMPISize() const
returns the number of processors used for this domain
Definition: ripley/src/RipleyDomain.h:140
Base class for all escript domains.
Definition: AbstractDomain.h:56
#define FIRST_QUAD
Definition: MultiBrick.cpp:24
#define globalNodeId(x, y, z)
#define S(_J_, _I_)
Definition: ShapeFunctions.cpp:134
dim_t m_gNE[3]
total number of elements in each dimension
Definition: ripley/src/Brick.h:301
std::complex< real_t > cplx_t
complex data type
Definition: DataTypes.h:76
std::vector< DiracPoint > m_diracPoints
Definition: ripley/src/RipleyDomain.h:775
virtual unsigned int getNumSubdivisionsPerElement() const
returns the number of times each root element has been subdivided
Definition: MultiBrick.h:171
virtual const int * getNumSubdivisionsPerDim() const
returns the number of spatial subdivisions in each dimension
Definition: MultiBrick.h:190
#define ESYS_ASSERT(a, b)
EsysAssert is a MACRO that will throw an exception if the boolean condition specified is false.
Definition: Assert.h:77
virtual void Print_Mesh_Info(bool full=false) const
writes information about the mesh to standard output
Definition: ripley/src/RipleyDomain.cpp:838
IndexVector m_dofId
vector of sample reference identifiers
Definition: ripley/src/Brick.h:336
virtual std::vector< IndexVector > getConnections(bool includeShared) const
returns occupied matrix column indices for all matrix rows
Definition: MultiBrick.cpp:1396
MultiBrick(dim_t n0, dim_t n1, dim_t n2, double x0, double y0, double z0, double x1, double y1, double z1, int d0=-1, int d1=-1, int d2=-1, const std::vector< double > &points=std::vector< double >(), const std::vector< int > &tags=std::vector< int >(), const TagMap &tagnamestonums=TagMap(), escript::SubWorld_ptr w=escript::SubWorld_ptr(), unsigned int subdivisions=1)
creates a hexagonal mesh with n0 x n1 x n2 elements over the brick [x0,x1] x [y0,y1] x [z0,...
Definition: MultiBrick.cpp:52
virtual void readNcGrid(escript::Data &out, std::string filename, std::string varname, const ReaderParameters ¶ms) const
reads grid data from a netCDF file into a Data object
Definition: MultiBrick.cpp:692
virtual void interpolateReducedToReducedFiner(const escript::Data &source, escript::Data &target, const MultiBrick &other) const
Definition: MultiBrick.cpp:256
dim_t findNode(const double *coords) const
finds the node that the given point coordinates belong to
Definition: MultiBrick.cpp:1434