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29 #ifndef __PASO_MKL_H__
30 #define __PASO_MKL_H__
36 #ifdef ESYS_INDEXTYPE_LONG
37 #define ES_PARDISO pardiso_64
38 #define ES_MKL_INT MKL_INT64
40 #define ES_PARDISO pardiso
41 #define ES_MKL_INT MKL_INT
45 #include <mkl_pardiso.h>
49 #define MKL_ERROR_NO 0
50 #define MKL_MTYPE_REAL_SYM -2
51 #define MKL_MTYPE_REAL_UNSYM 11
53 #define MKL_REORDERING_MINIMUM_DEGREE 0
54 #define MKL_REORDERING_NESTED_DISSECTION 2
55 #define MKL_REORDERING_NESTED_DISSECTION_OMP 3
56 #define MKL_PHASE_SYMBOLIC_FACTORIZATION 11
57 #define MKL_PHASE_FACTORIZATION 22
58 #define MKL_PHASE_SOLVE 33
59 #define MKL_PHASE_RELEASE_MEMORY -1
64 dim_t numRefinements,
bool verbose);
68 #endif // __PASO_MKL_H__
#define MATRIX_FORMAT_BLK1
Definition: Paso.h:62
index_t * globalDegreesOfFreedom
Definition: dudley/src/NodeFile.h:155
void setContactElements(ElementFile *elements)
replaces the contact element file by elements
Definition: finley/src/FinleyDomain.cpp:132
#define ES_MKL_INT
Definition: MKL.h:52
static const real_t LARGE_POSITIVE_FLOAT
Definition: FCT_Solver.cpp:43
int MPI_Status
Definition: EsysMPI.h:43
#define PASO_ONE
Definition: Paso.h:66
#define MKL_REORDERING_NESTED_DISSECTION_OMP
Definition: MKL.h:66
int * Tag
Tag[i] is the tag of element i.
Definition: dudley/src/ElementFile.h:131
escript::JMPI m_mpiInfo
MPI information.
Definition: DudleyDomain.h:761
index_t minColor
minimum color value
Definition: finley/src/ElementFile.h:163
void joinFaces(double safetyFactor, double tolerance, bool optimize)
Definition: Mesh_joinFaces.cpp:47
Definition: ReferenceElements.h:84
FinleyDomain implements the AbstractContinuousDomain interface for the Finley library.
Definition: finley/src/FinleyDomain.h:137
void relabelElementNodes(const IndexVector &newNode, index_t offset)
Definition: finley/src/FinleyDomain.cpp:201
Definition: ReferenceElements.h:39
void printElementInfo(const ElementFile *e, const std::string &title, const std::string &defaultType, bool full) const
Definition: dudley/src/Mesh_write.cpp:49
index_t * globalReducedNodesIndex
Definition: finley/src/NodeFile.h:179
double real_t
type of all real-valued scalars in escript
Definition: DataTypes.h:73
int MPI_Op
Definition: EsysMPI.h:42
int approximationOrder
Definition: finley/src/FinleyDomain.h:914
#define MKL_REORDERING_MINIMUM_DEGREE
Definition: MKL.h:64
Definition: ElementType.h:48
static escript::Domain_ptr createRec8(dim_t NE0, dim_t NE1, double l0, double l1, bool periodic0, bool periodic1, int order, int reducedOrder, bool useElementsOnFace, bool useFullElementOrder, bool useMacroElements, bool optimize, escript::JMPI jmpi)
Creates a 2-dimensional rectangular domain with second order (Rec8 or Rec9) elements in the rectangle...
Definition: Mesh_rec8.cpp:24
escript::JMPI m_mpiInfo
MPI information.
Definition: finley/src/FinleyDomain.h:911
Definition: DudleyException.h:35
Definition: ReferenceElements.h:47
TagMap m_tagMap
the tag map mapping names to tag keys
Definition: finley/src/FinleyDomain.h:929
int numDim
number of spatial dimensions
Definition: dudley/src/NodeFile.h:144
Definition: ReferenceElements.h:97
SolverResult Solver_MINRES(SystemMatrix_ptr A, double *R, double *X, dim_t *iter, double *tolerance, Performance *pp)
Definition: MINRES.cpp:70
Definition: ReferenceElements.h:105
void resolveNodeIds()
Definition: Mesh_resolveNodeIds.cpp:33
std::pair< index_t, index_t > getNodeRange() const
Definition: dudley/src/ElementFile.h:180
static Pattern_ptr fromIndexListArray(dim_t n0, dim_t n, const escript::IndexList *index_list_array, index_t range_min, index_t range_max, index_t index_offset)
Definition: Pattern.cpp:100
Definition: dudley/src/NodeFile.h:37
void allocTable(dim_t NE)
allocates the element table within an element file to hold NE elements
Definition: finley/src/ElementFile.cpp:75
index_t * globalDegreesOfFreedom
Definition: finley/src/NodeFile.h:171
boost::shared_ptr< Distribution > Distribution_ptr
Definition: Distribution.h:35
#define MKL_PHASE_SYMBOLIC_FACTORIZATION
Definition: MKL.h:67
void glueFaces(double safetyFactor, double tolerance, bool optimize)
Definition: Mesh_glueFaces.cpp:47
std::string m_name
domain description
Definition: DudleyDomain.h:763
#define INDEX2(_X1_, _X2_, _N1_)
Definition: index.h:21
boost::shared_ptr< const ReferenceElementSet > const_ReferenceElementSet_ptr
Definition: ReferenceElementSets.h:90
void write(const std::string &fileName) const
writes the current mesh to a file with the given name in the fly file format.
Definition: dudley/src/Mesh_write.cpp:82
const index_t * borrowTargetDegreesOfFreedom() const
returns the mapping from local degrees of freedom to a target
Definition: dudley/src/NodeFile.h:232
#define MISSING_NODES
Definition: finley/src/Mesh_readGmsh.cpp:28
int * Tag
Tag[i] is the tag of node i.
Definition: finley/src/NodeFile.h:164
Definition: ReferenceElements.h:78
static ElementTypeId getTypeId(const char *)
returns the element type id from its textual representation
Definition: ReferenceElements.cpp:664
Definition: ReferenceElements.h:51
int * Tag
Tag[i] is the tag of element i.
Definition: finley/src/ElementFile.h:139
index_t * Nodes
Nodes[INDEX(k, i, numNodes)] is the k-th node in the i-th element.
Definition: dudley/src/ElementFile.h:143
void IndexList_insertElementsWithRowRangeNoMainDiagonal(IndexList *indexList, index_t firstRow, index_t lastRow, const ElementFile *elements, const index_t *map)
Definition: dudley/src/IndexList.cpp:74
void setElements(ElementFile *elements)
replaces the element file by elements
Definition: DudleyDomain.cpp:105
An exception class for features which are not (yet) implemented.
Definition: EsysException.h:89
Definition: FinleyException.h:36
Domain_ptr getPtr()
Returns smart pointer which is managing this object. If one does not exist yet it creates one.
Definition: AbstractDomain.cpp:36
Definition: ReferenceElements.h:111
#define ERROR
Definition: finley/src/Mesh_readGmsh.cpp:32
boost::shared_ptr< SystemMatrix > SystemMatrix_ptr
Definition: SystemMatrix.h:51
int integrationOrder
Definition: finley/src/FinleyDomain.h:916
int refId
Definition: Mesh_findMatchingFaces.cpp:55
ElementFile * m_elements
the table of the elements
Definition: DudleyDomain.h:767
void allocTable(dim_t NE)
allocates the element table within an element file to hold NE elements
Definition: dudley/src/ElementFile.cpp:64
dim_t getNumNodes() const
returns the number of FEM nodes (on this rank)
Definition: dudley/src/NodeFile.h:202
ElementFile * m_faceElements
the table of face elements
Definition: finley/src/FinleyDomain.h:923
boost::shared_ptr< SystemMatrixPattern > SystemMatrixPattern_ptr
Definition: SystemMatrixPattern.h:50
index_t * globalReducedDOFIndex
Definition: finley/src/NodeFile.h:176
DudleyDomain(const std::string &name, int numDim, escript::JMPI jmpi)
Constructor for DudleyDomain.
Definition: DudleyDomain.cpp:67
#define PASO_MINIMUM_FILL_IN
Definition: Options.h:51
void writeElementInfo(std::ostream &stream, const ElementFile *e, const std::string &defaultType) const
Definition: dudley/src/Mesh_write.cpp:31
dim_t getNumDegreesOfFreedomTargets() const
returns the number of degrees of freedom targets (own and shared)
Definition: finley/src/NodeFile.h:274
std::vector< double > x
Definition: Mesh_findMatchingFaces.cpp:56
boost::shared_ptr< const ReferenceElement > const_ReferenceElement_ptr
Definition: ReferenceElements.h:211
virtual int getMPISize() const
returns the number of processors used for this domain
Definition: finley/src/FinleyDomain.h:388
void MKL_solve(SparseMatrix_ptr A, double *out, double *in, index_t reordering, dim_t numRefinements, bool verbose)
Definition: MKL.cpp:78
int * Owner
Owner[i] contains the rank that owns element i.
Definition: dudley/src/ElementFile.h:134
boost::shared_ptr< AbstractDomain > Domain_ptr
Definition: AbstractDomain.h:47
void AXPY(dim_t N, double *x, double a, const double *y)
x = x+a*y
Definition: PasoUtil.h:122
static escript::Domain_ptr readGmsh(escript::JMPI mpiInfo, const std::string &filename, int numDim, int integrationOrder=-1, int reducedIntegrationOrder=-1, bool optimize=false, bool useMacroElements=false)
reads a gmsh mesh file.
Definition: finley/src/Mesh_readGmsh.cpp:1538
real_t real_t_max()
Returns the maximum finite value for the real_t type.
Definition: DataTypes.h:111
#define MAX3(_arg1_, _arg2_, _arg3_)
Definition: Mesh_hex20.cpp:30
Definition: ReferenceElements.h:65
void gather(const index_t *index, const NodeFile *in)
Definition: finley/src/NodeFile.cpp:331
static double lockingGridSize
Definition: Mesh_findMatchingFaces.cpp:50
index_t * Nodes
Definition: finley/src/ElementFile.h:154
Definition: ReferenceElements.h:85
static escript::Domain_ptr createHex20(dim_t NE0, dim_t NE1, dim_t NE2, double l0, double l1, double l2, bool periodic0, bool periodic1, bool periodic2, int order, int reducedOrder, bool useElementsOnFace, bool useFullElementOrder, bool useMacroElements, bool optimize, escript::JMPI jmpi)
Creates a 3-dimensional rectangular domain with second order (Hex20 or Hex27) elements.
Definition: Mesh_hex20.cpp:36
#define SUCCESS
Definition: finley/src/Mesh_readGmsh.cpp:31
NodeFile * m_nodes
the table of the nodes
Definition: finley/src/FinleyDomain.h:919
const char * ename
name of element type
Definition: dudley/src/ElementFile.h:166
void resolveNodeIds()
Definition: finley/src/FinleyDomain.cpp:2868
void distributeByRankOfDOF(const int *mpiRankOfDOF, const index_t *nodesId)
redistributes the elements including overlap by rank
Definition: ElementFile_distributeByRankOfDOF.cpp:34
dim_t getNumReducedDegreesOfFreedom() const
returns the number of reduced order degrees of freedom (on this rank)
Definition: finley/src/NodeFile.h:269
#define PASO_MKL
Definition: Options.h:48
ElementFile * getElements() const
returns a pointer to this domain's element file
Definition: finley/src/FinleyDomain.h:340
#define MATRIX_FORMAT_OFFSET1
Definition: Paso.h:63
Definition: ReferenceElements.h:41
index_t maxColor
maximum color value
Definition: finley/src/ElementFile.h:166
Definition: ReferenceElements.h:110
#define MPI_INT
Definition: EsysMPI.h:44
index_t index_t_max()
Returns the maximum finite value for the index_t type.
Definition: DataTypes.h:102
static escript::Domain_ptr read(escript::JMPI mpiInfo, const std::string &filename, bool optimize)
reads a mesh from a fly file. For MPI parallel runs fans out the mesh to multiple processes.
Definition: dudley/src/Mesh_read.cpp:148
Definition: ReferenceElements.h:55
Definition: ReferenceElements.h:86
void findMatchingFaces(double safetyFactor, double tolerance, int *numPairs, int *elem0, int *elem1, int *matchingNodes) const
Definition: Mesh_findMatchingFaces.cpp:84
index_t maxColor
maximum color value
Definition: dudley/src/ElementFile.h:154
#define MPI_MAX
Definition: EsysMPI.h:52
ElementFile * m_points
the table of points (treated as elements of dimension 0)
Definition: finley/src/FinleyDomain.h:927
#define ES_PARDISO
Definition: MKL.h:51
ElementFile * m_points
the table of points (treated as elements of dimension 0)
Definition: DudleyDomain.h:771
dim_t getNumNodes() const
returns the number of FEM nodes (on this rank)
Definition: finley/src/NodeFile.h:254
Definition: ReferenceElements.h:76
void IndexList_insertElements(IndexList *index_list, const ElementFile *elements, const index_t *map)
Definition: dudley/src/IndexList.cpp:46
void copy(dim_t N, double *out, const double *in)
out = in
Definition: PasoUtil.h:110
dim_t getNumDegreesOfFreedomTargets() const
returns the number of degrees of freedom targets (own and shared)
Definition: dudley/src/NodeFile.h:212
double * Coordinates
Coordinates[INDEX2(k,i,numDim)] is the k-th coordinate of node i.
Definition: finley/src/NodeFile.h:173
index_t minColor
minimum color value
Definition: dudley/src/ElementFile.h:151
dim_t numElements
number of elements
Definition: finley/src/ElementFile.h:132
A suite of factory methods for creating 2D and 3D dudley domains.
Definition: dudley/src/Assemble.h:31
#define MKL_PHASE_RELEASE_MEMORY
Definition: MKL.h:70
int * Owner
Owner[i] contains the rank that owns element i.
Definition: finley/src/ElementFile.h:142
void assignMPIRankToDOFs(int *mpiRankOfDOF, const IndexVector &distribution)
Definition: dudley/src/NodeFile.cpp:230
static escript::Domain_ptr create3D(dim_t NE0, dim_t NE1, dim_t NE2, double l0, double l1, double l2, bool optimize, escript::JMPI jmpi)
Creates a 3-dimensional rectangular domain.
Definition: Mesh_tet4.cpp:26
double l2(dim_t n, const double *x, escript::JMPI mpiinfo)
returns the global L2 norm of x
Definition: PasoUtil.cpp:524
An exception class for Input/Output errors.
Definition: EsysException.h:79
void Print_Mesh_Info(bool full=false) const
Definition: finley/src/Mesh_write.cpp:146
#define INDEX3(_X1_, _X2_, _X3_, _N1_, _N2_)
Definition: index.h:23
index_t dim_t
Definition: DataTypes.h:87
dim_t numElements
number of elements
Definition: dudley/src/ElementFile.h:123
boost::shared_ptr< JMPI_ > JMPI
Definition: EsysMPI.h:70
ElementFile * getFaceElements() const
returns a pointer to this domain's face element file
Definition: finley/src/FinleyDomain.h:352
Definition: dudley/src/ElementFile.h:62
Definition: ReferenceElements.h:109
void optimizeDOFDistribution(IndexVector &distribution)
Definition: dudley/src/Mesh_optimizeDOFDistribution.cpp:74
Definition: ReferenceElements.h:112
Definition: ReferenceElements.h:46
static escript::Domain_ptr create2D(dim_t NE0, dim_t NE1, double l0, double l1, bool optimize, escript::JMPI jmpi)
Creates a 2-dimensional rectangular domain.
Definition: Mesh_tri3.cpp:24
NodeFile * m_nodes
the table of the nodes
Definition: DudleyDomain.h:765
index_t * Id
Definition: dudley/src/ElementFile.h:128
void addDiracPoints(const std::vector< double > &points, const std::vector< int > &tags)
adds Dirac delta points. Do NOT call this at any time other than construction! Using them later creat...
Definition: Mesh_addPoints.cpp:46
Definition: ReferenceElements.h:113
void markNodes(std::vector< short > &mask, index_t offset) const
Definition: DudleyDomain.cpp:149
Definition: ReferenceElements.h:64
void optimizeDOFLabeling(const IndexVector &distribution)
optimizes the labeling of the DOFs on each processor
Definition: Mesh_optimizeDOFLabeling.cpp:36
index_t * Color
Definition: finley/src/ElementFile.h:160
std::string m_name
domain description
Definition: finley/src/FinleyDomain.h:913
Definition: SystemMatrixPattern.h:55
NodeFile * getNodes() const
returns a pointer to this domain's node file
Definition: finley/src/FinleyDomain.h:328
index_t getMaxInt(int dim, dim_t N, const index_t *values)
calculates the maximum value from a dim X N integer array
Definition: finley/src/Util.cpp:280
SolverResult
Definition: Paso.h:53
TagMap m_tagMap
the tag map mapping names to tag keys
Definition: DudleyDomain.h:773
Definition: ReferenceElements.h:104
#define MAX3(_arg1_, _arg2_, _arg3_)
Definition: Mesh_tet4.cpp:22
Definition: ReferenceElements.h:37
virtual int getDim() const
returns the dimensionality of this domain
Definition: finley/src/FinleyDomain.h:557
int reducedApproximationOrder
Definition: finley/src/FinleyDomain.h:915
void Print_Mesh_Info(bool full=false) const
Definition: dudley/src/Mesh_write.cpp:138
index_t * Id
Id[i] is the unique ID number of FEM node i.
Definition: finley/src/NodeFile.h:162
#define MKL_REORDERING_NESTED_DISSECTION
Definition: MKL.h:65
void gather(int len, const index_t *index, int numData, const double *in, double *out)
Definition: finley/src/Util.cpp:66
index_t * Id
Definition: finley/src/ElementFile.h:136
std::vector< index_t > packMask(const std::vector< short > &mask)
Definition: dudley/src/Util.cpp:235
void MKL_free(SparseMatrix *A)
Definition: MKL.cpp:47
#define MKL_ERROR_NO
Definition: MKL.h:60
Definition: ReferenceElements.h:54
FinleyDomain(const std::string &name, int numDim, escript::JMPI jmpi)
Constructor for FinleyDomain.
Definition: finley/src/FinleyDomain.cpp:71
#define MKL_MTYPE_REAL_UNSYM
Definition: MKL.h:62
#define MAX_numNodes_gmsh
Definition: finley/src/Mesh_readGmsh.cpp:25
NodeFile * getNodes() const
returns a pointer to this domain's node file
Definition: DudleyDomain.h:210
double getDist(int e0, int i0, int e1, int i1, int numDim, int NN, const double *X)
Definition: Mesh_findMatchingFaces.cpp:73
Definition: ReferenceElements.h:81
int reducedIntegrationOrder
Definition: finley/src/FinleyDomain.h:917
Definition: ReferenceElements.h:96
boost::shared_ptr< SparseMatrix > SparseMatrix_ptr
Definition: SparseMatrix.h:46
escript::Distribution_ptr reducedDegreesOfFreedomDistribution
Definition: finley/src/NodeFile.h:187
ElementFile * m_contactElements
the table of contact elements
Definition: finley/src/FinleyDomain.h:925
Definition: ReferenceElements.h:72
#define MPI_DOUBLE
Definition: EsysMPI.h:45
Definition: ReferenceElements.h:53
ElementFile * getContactElements() const
returns a pointer to this domain's contact element file
Definition: finley/src/FinleyDomain.h:364
std::pair< index_t, index_t > getDOFRange() const
Definition: dudley/src/NodeFile.cpp:156
Definition: ReferenceElements.h:42
void allocTable(dim_t numNodes)
allocates the node table within this node file to hold numNodes nodes.
Definition: dudley/src/NodeFile.cpp:73
Definition: ReferenceElements.h:80
PasoException exception class.
Definition: PasoException.h:43
static escript::Domain_ptr read(escript::JMPI mpiInfo, const std::string &fileName, int integrationOrder=-1, int reducedIntegrationOrder=-1, bool optimize=false)
reads a mesh from a fly file. For MPI parallel runs fans out the mesh to multiple processes.
Definition: finley/src/Mesh_read.cpp:151
Definition: ReferenceElements.h:38
escript::Distribution_ptr degreesOfFreedomDistribution
Definition: finley/src/NodeFile.h:186
double gettime()
returns the current ticks for timing
Definition: EsysMPI.h:185
ElementTypeId
Definition: ReferenceElements.h:36
void scale(dim_t N, double *x, double a)
x = a*x
Definition: PasoUtil.h:116
int index_t
type for array/matrix indices used both globally and on each rank
Definition: DataTypes.h:82
#define MAX_numNodes_gmsh
Definition: dudley/src/Mesh_readGmsh.cpp:24
Definition: ReferenceElements.h:108
Definition: ReferenceElements.h:50
#define EARLY_EOF
Definition: finley/src/Mesh_readGmsh.cpp:27
escript::Distribution_ptr dofDistribution
MPI distribution of degrees of freedom.
Definition: dudley/src/NodeFile.h:165
static escript::Domain_ptr readGmsh(escript::JMPI mpiInfo, const std::string &filename, int numDim, bool optimize)
reads a gmsh mesh file.
Definition: dudley/src/Mesh_readGmsh.cpp:27
void setElements(ElementFile *elements)
replaces the element file by elements
Definition: finley/src/FinleyDomain.cpp:120
void createColoring(const index_t *dofMap)
tries to reduce the number of colours for all element files
Definition: DudleyDomain.cpp:2101
Definition: finley/src/NodeFile.h:39
ElementFile * getPoints() const
returns a pointer to this domain's point (nodal) element file
Definition: finley/src/FinleyDomain.h:376
Definition: ElementType.h:51
virtual void setTagMap(const std::string &name, int tag)
sets a map from a clear tag name to a tag key
Definition: DudleyDomain.cpp:1910
void copyTable(index_t offset, index_t nodeOffset, index_t idOffset, const ElementFile *in)
Definition: finley/src/ElementFile.cpp:116
void relabelElementNodes(const index_t *newNode, index_t offset)
Definition: DudleyDomain.cpp:156
bool FaceCenterCompare(const FaceCenter &e1, const FaceCenter &e2)
comparison function for findMatchingFaces
Definition: Mesh_findMatchingFaces.cpp:60
void setPoints(ElementFile *elements)
replaces the point element file by elements
Definition: DudleyDomain.cpp:117
#define MKL_PHASE_FACTORIZATION
Definition: MKL.h:68
Definition: ReferenceElements.h:73
void setPoints(ElementFile *elements)
replaces the point element file by elements
Definition: finley/src/FinleyDomain.cpp:138
index_t * globalNodesIndex
assigns each local node a global unique ID in a dense labeling
Definition: finley/src/NodeFile.h:181
void IndexList_insertElementsWithRowRangeNoMainDiagonal(IndexList *index_list, index_t firstRow, index_t lastRow, ElementFile *elements, index_t *row_map, index_t *col_map)
Definition: finley/src/IndexList.cpp:101
void distributeByRankOfDOF(const IndexVector &distribution)
Definition: Mesh_distributeByRankOfDOF.cpp:36
DudleyDomain implements the AbstractContinuousDomain interface for the Dudley library.
Definition: DudleyDomain.h:119
index_t * Id
Id[i] is the unique ID number of FEM node i.
Definition: dudley/src/NodeFile.h:146
void IndexList_insertElements(IndexList *index_list, ElementFile *elements, bool reduce_row_order, const index_t *row_map, bool reduce_col_order, const index_t *col_map)
Definition: finley/src/IndexList.cpp:48
Definition: finley/src/ElementFile.h:72
int * Tag
Tag[i] is the tag of node i.
Definition: dudley/src/NodeFile.h:148
void prepare(bool optimize)
prepares the mesh for further use
Definition: DudleyDomain.cpp:2055
void optimizeDOFDistribution(IndexVector &distribution)
Definition: finley/src/Mesh_optimizeDOFDistribution.cpp:76
boost::shared_ptr< Connector > Connector_ptr
Definition: Coupler.h:48
index_t * Color
Definition: dudley/src/ElementFile.h:148
boost::shared_ptr< Pattern > Pattern_ptr
Definition: Pattern.h:48
virtual void setTagMap(const std::string &name, int tag)
sets a map from a clear tag name to a tag key
Definition: finley/src/FinleyDomain.cpp:2504
void setFaceElements(ElementFile *elements)
replaces the face element file by elements
Definition: DudleyDomain.cpp:111
const index_t * borrowTargetDegreesOfFreedom() const
Definition: finley/src/NodeFile.h:314
#define THROW_ERROR
Definition: finley/src/Mesh_readGmsh.cpp:30
dim_t getNumDegreesOfFreedom() const
returns the number of degrees of freedom (on this rank)
Definition: finley/src/NodeFile.h:264
virtual int getDim() const
Returns the spatial dimension of the domain.
Definition: DudleyDomain.h:427
Definition: ElementType.h:55
dim_t getNumReducedDegreesOfFreedomTargets() const
returns the number of reduced degrees of freedom targets (own and shared)
Definition: finley/src/NodeFile.h:279
void printElementInfo(const ElementFile *e, const std::string &title, const std::string &defaultType, bool full) const
Definition: finley/src/Mesh_write.cpp:51
Definition: ReferenceElementSets.h:37
const index_t * borrowTargetReducedDegreesOfFreedom() const
Definition: finley/src/NodeFile.h:319
#define MAX3(_arg1_, _arg2_, _arg3_)
Definition: Mesh_hex8.cpp:31
void setFaceElements(ElementFile *elements)
replaces the face element file by elements
Definition: finley/src/FinleyDomain.cpp:126
Definition: escriptcore/src/IndexList.h:27
const_ReferenceElementSet_ptr referenceElementSet
the reference element to be used
Definition: finley/src/ElementFile.h:130
Definition: BiCGStab.cpp:25
#define MKL_PHASE_SOLVE
Definition: MKL.h:69
Definition: ElementType.h:49
void write(const std::string &fileName) const
writes the current mesh to a file with the given name in the fly file format.
Definition: finley/src/Mesh_write.cpp:86
A suite of factory methods for creating various finley domains.
Definition: finley/src/Assemble.h:31
int numDim
number of spatial dimensions
Definition: finley/src/NodeFile.h:160
#define ESYS_ASSERT(a, b)
EsysAssert is a MACRO that will throw an exception if the boolean condition specified is false.
Definition: Assert.h:77
Definition: ElementType.h:50
dim_t getNumDegreesOfFreedom() const
returns the number of degrees of freedom (on this rank)
Definition: dudley/src/NodeFile.h:207
void allocTable(dim_t numNodes)
allocates the node table within this node file to hold numNodes nodes.
Definition: finley/src/NodeFile.cpp:137
double * Coordinates
Coordinates[INDEX2(k,i,numDim)] is the k-th coordinate of node i.
Definition: dudley/src/NodeFile.h:157
An exception class that signals an invalid argument value.
Definition: EsysException.h:99
ElementTypeId
Definition: ElementType.h:35
void prepare(bool optimize)
prepares the mesh for further use
Definition: finley/src/FinleyDomain.cpp:2680
ElementFile * m_elements
the table of the elements
Definition: finley/src/FinleyDomain.h:921
double innerProduct(dim_t n, const double *x, const double *y, escript::JMPI mpiinfo)
returns the inner product of global arrays x and y
Definition: PasoUtil.cpp:451
ElementTypeId etype
element type ID
Definition: dudley/src/ElementFile.h:163
Definition: ReferenceElements.h:77
ElementFile * m_faceElements
the table of face elements
Definition: DudleyDomain.h:769
ElementTypeId eltTypeFromString(const std::string &s)
Definition: ElementType.h:46
#define MATRIX_FORMAT_DEFAULT
Definition: Paso.h:60
void copyTable(index_t offset, index_t idOffset, index_t dofOffset, const NodeFile *in)
Definition: finley/src/NodeFile.cpp:295
#define MISSING_ELEMENTS
Definition: finley/src/Mesh_readGmsh.cpp:29
int numNodes
number of nodes per element
Definition: dudley/src/ElementFile.h:140
index_t * globalNodesIndex
assigns each local node a global unique ID in a dense labeling
Definition: dudley/src/NodeFile.h:159
static escript::Domain_ptr createHex8(dim_t NE0, dim_t NE1, dim_t NE2, double l0, double l1, double l2, bool periodic0, bool periodic1, bool periodic2, int order, int reducedOrder, bool useElementsOnFace, bool optimize, escript::JMPI jmpi)
Creates a 3-dimensional rectangular domain with first order (Hex8) elements.
Definition: Mesh_hex8.cpp:37
#define PASO_ZERO
Definition: Paso.h:67
Definition: ReferenceElements.h:45
static FinleyDomain * merge(const std::vector< const FinleyDomain * > &meshes)
Definition: Mesh_merge.cpp:23
#define SSCANF_CHECK(scan_ret)
Definition: finley/src/Mesh_readGmsh.cpp:24
std::vector< index_t > IndexVector
Definition: DataTypes.h:85
int numNodes
number of nodes per element
Definition: finley/src/ElementFile.h:148
void writeElementInfo(std::ostream &stream, const ElementFile *e, const std::string &defaultType) const
Definition: finley/src/Mesh_write.cpp:32
static escript::Domain_ptr createRec4(dim_t NE0, dim_t NE1, double L0, double L1, bool periodic0, bool periodic1, int order, int reducedOrder, bool useElementsOnFace, bool optimize, escript::JMPI jmpi)
Creates a 2-dimensional rectangular domain with first order (Rec4) elements in the rectangle [0,...
Definition: Mesh_rec4.cpp:24