17 #ifndef __Speckley_DOMAIN_H__ 18 #define __Speckley_DOMAIN_H__ 20 #include <speckley/Speckley.h> 21 #include <speckley/SpeckleyException.h> 22 #include <speckley/AbstractAssembler.h> 23 #include <speckley/domainhelpers.h> 25 #include <escript/AbstractContinuousDomain.h> 26 #include <escript/Data.h> 27 #include <escript/FunctionSpace.h> 28 #include <escript/SubWorld.h> 30 #include <boost/python/tuple.hpp> 31 #include <boost/python/list.hpp> 44 typedef std::map<std::string, int>
simap_t;
123 MPI_Barrier(m_mpiInfo->comm);
144 virtual bool isValidFunctionSpaceType(
int fsType)
const;
150 virtual std::string functionSpaceTypeAsString(
int fsType)
const;
156 virtual int getDim()
const {
return m_numDim; }
167 return !(operator==(other));
176 virtual std::pair<int,dim_t> getDataShape(
int fsType)
const;
184 int getTagFromSampleNo(
int fsType,
dim_t sampleNo)
const;
192 virtual void setTagMap(
const std::string& name,
int tag) {
193 m_tagMap[name] = tag;
201 virtual int getTag(
const std::string& name)
const {
202 if (m_tagMap.find(name) != m_tagMap.end()) {
203 return m_tagMap.find(name)->second;
215 return (m_tagMap.find(name)!=m_tagMap.end());
222 virtual std::string showTagNames()
const;
244 virtual bool probeInterpolationOnDomain(
int fsType_source,
245 int fsType_target)
const;
254 virtual signed char preferredInterpolationOnDomain(
int fsType_source,
255 int fsType_target)
const;
264 commonFunctionSpace(
const std::vector<int>& fs,
int& resultcode)
const;
319 virtual void setTags(
int fsType,
int newTag,
const escript::Data& mask)
const;
326 virtual bool isCellOriented(
int fsType)
const;
340 virtual int getNumberOfTagsInUse(
int fsType)
const;
346 virtual const int* borrowListOfTagsInUse(
int fsType)
const;
352 virtual bool canTag(
int fsType)
const;
473 virtual int getSystemMatrixTypeId(
const boost::python::object& options)
const;
484 virtual int getTransportTypeId(
int solver,
int preconditioner,
int package,
485 bool symmetry)
const;
502 Assembler_ptr assembler)
const;
510 Assembler_ptr assembler)
const;
518 Assembler_ptr assembler)
const;
525 const boost::python::list& data,
526 Assembler_ptr assembler)
const;
535 Assembler_ptr assembler)
const;
540 void addPDEToTransportProblemFromPython(
543 Assembler_ptr assembler)
const;
551 int column_blocksize,
567 virtual void Print_Mesh_Info(
bool full=
false)
const;
577 virtual void write(
const std::string& filename)
const = 0;
583 virtual std::string getDescription()
const = 0;
590 void dump(
const std::string& filename)
const = 0;
597 const index_t* borrowSampleReferenceIDs(
int fsType)
const = 0;
639 virtual void writeBinaryGrid(
const escript::Data& in, std::string filename,
646 virtual bool ownSample(
int fsType,
index_t id)
const = 0;
652 virtual dim_t getNumDataPointsGlobal()
const = 0;
658 virtual const dim_t* getNumNodesPerDim()
const = 0;
664 virtual const dim_t* getNumElementsPerDim()
const = 0;
671 virtual const dim_t* getNumFacesPerBoundary()
const = 0;
677 virtual IndexVector getNodeDistribution()
const = 0;
683 virtual const int* getNumSubdivisionsPerDim()
const = 0;
689 virtual double getLocalCoordinate(
dim_t index,
int dim)
const = 0;
695 virtual boost::python::tuple getGridParameters()
const = 0;
702 virtual bool supportsFilter(
const boost::python::tuple& t)
const;
708 const DataMap& options)
const {
712 Assembler_ptr createAssemblerFromPython(
const std::string type,
713 const boost::python::list& options)
const;
719 virtual const double *getLength()
const = 0;
744 void updateTagsInUse(
int fsType)
const;
750 void addPoints(
const std::vector<double>& coords,
751 const std::vector<int>& tags);
759 virtual dim_t getNumNodes()
const = 0;
762 virtual dim_t getNumElements()
const = 0;
765 virtual dim_t getNumDOF()
const = 0;
768 virtual void assembleCoordinates(
escript::Data& arg)
const = 0;
781 bool reduced)
const = 0;
787 virtual dim_t getDofOfNode(
dim_t node)
const = 0;
793 virtual void balanceNeighbours(
escript::Data& data,
bool average)
const = 0;
800 const DataMap& coefs, Assembler_ptr assembler)
const;
806 Assembler_ptr assembler)
const;
810 Assembler_ptr assembler)
const;
813 virtual dim_t findNode(
const double *coords)
const = 0;
818 #endif // __Speckley_DOMAIN_H__ MPI_Comm getMPIComm() const
returns the MPI communicator
Definition: speckley/src/SpeckleyDomain.h:137
AbstractContinuousDomain, base class for continuous domains.
Definition: AbstractContinuousDomain.h:45
std::vector< int > m_elementTagsInUse
Definition: speckley/src/SpeckleyDomain.h:733
virtual int getFunctionOnBoundaryCode() const
returns a function on boundary FunctionSpace code
Definition: speckley/src/SpeckleyDomain.h:398
Definition: FunctionSpace.h:34
Definition: speckley/src/SpeckleyDomain.h:36
Definition: AbstractAssembler.cpp:18
Definition: Speckley.h:52
virtual bool operator!=(const escript::AbstractDomain &other) const
inequality operator
Definition: speckley/src/SpeckleyDomain.h:166
IndexVector m_diracPointNodeIDs
Definition: speckley/src/SpeckleyDomain.h:735
SpeckleyDomain extends the AbstractContinuousDomain interface for the Speckley library and is the bas...
Definition: speckley/src/SpeckleyDomain.h:84
escript::Data readBinaryGridFromZipped(std::string filename, escript::FunctionSpace fs, const object &pyShape, double fill, int byteOrder, int dataType, const object &pyFirst, const object &pyNum, const object &pyMultiplier, const object &pyReverse)
Definition: speckleycpp.cpp:85
bool probeInterpolationAcross(int fsType_source, const escript::AbstractDomain &domain, int fsType_target, int dim)
Definition: CrossDomainCoupler.cpp:31
virtual escript::JMPI getMPI() const
returns a reference to the MPI information wrapper for this domain
Definition: speckley/src/SpeckleyDomain.h:103
std::vector< real_t > DoubleVector
Definition: Speckley.h:43
virtual int getMPIRank() const
returns the MPI rank of this processor
Definition: speckley/src/SpeckleyDomain.h:115
virtual void addPDEToTransportProblem(AbstractTransportProblem &tp, escript::Data &source, const escript::Data &M, const escript::Data &A, const escript::Data &B, const escript::Data &C, const escript::Data &D, const escript::Data &X, const escript::Data &Y, const escript::Data &d, const escript::Data &y, const escript::Data &d_contact, const escript::Data &y_contact, const escript::Data &d_dirac, const escript::Data &y_dirac) const
adds a PDE onto a transport problem
Definition: AbstractContinuousDomain.cpp:157
virtual int getFunctionOnContactOneCode() const
returns a FunctionOnContactOne code
Definition: speckley/src/SpeckleyDomain.h:431
StatusType m_status
Definition: speckley/src/SpeckleyDomain.h:729
virtual bool supportsContactElements() const
returns true if this domain supports contact elements, false otherwise
Definition: speckley/src/SpeckleyDomain.h:364
Definition: Speckley.h:47
virtual int getReducedFunctionOnBoundaryCode() const
returns a function on boundary with reduced integration order FunctionSpace code
Definition: speckley/src/SpeckleyDomain.h:407
virtual int getDiracDeltaFunctionsCode() const
returns a DiracDeltaFunctions FunctionSpace code
Definition: speckley/src/SpeckleyDomain.h:463
int byteOrder
byte order in the file (used by binary reader only)
Definition: speckley/src/SpeckleyDomain.h:63
boost::shared_ptr< JMPI_ > JMPI
Definition: EsysMPI.h:71
std::map< std::string, escript::Data > DataMap
Definition: speckley/src/domainhelpers.h:24
virtual int getDim() const
returns the number of spatial dimensions of the domain
Definition: speckley/src/SpeckleyDomain.h:156
Definition: Speckley.h:55
TagMap m_tagMap
Definition: speckley/src/SpeckleyDomain.h:731
assembler_t assembler_type
Definition: speckley/src/SpeckleyDomain.h:736
virtual int getReducedSolutionCode() const
returns a ReducedSolution FunctionSpace code
Definition: speckley/src/SpeckleyDomain.h:455
std::vector< dim_t > first
the (global) offset into the data object to start writing into
Definition: speckley/src/SpeckleyDomain.h:54
#define Speckley_DLL_API
Definition: speckley/src/system_dep.h:22
boost::shared_ptr< AbstractTransportProblem > ATP_ptr
Definition: AbstractTransportProblem.h:160
Structure that wraps parameters for the grid reading routines.
Definition: speckley/src/SpeckleyDomain.h:51
std::vector< int > m_nodeTagsInUse
Definition: speckley/src/SpeckleyDomain.h:732
virtual int getReducedContinuousFunctionCode() const
returns a continuous on reduced order nodes FunctionSpace code
Definition: speckley/src/SpeckleyDomain.h:376
virtual int getFunctionCode() const
returns a function FunctionSpace code
Definition: speckley/src/SpeckleyDomain.h:384
virtual int getApproximationOrder(int fsType) const
returns the approximation order used for a function space
Definition: speckley/src/SpeckleyDomain.h:358
virtual int getMPISize() const
returns the number of processors used for this domain
Definition: speckley/src/SpeckleyDomain.h:109
int m_order
element order (will be m_order + 1 quad points in each axis)
Definition: speckley/src/SpeckleyDomain.h:738
virtual void setTagMap(const std::string &name, int tag)
sets a map from a clear tag name to a tag key
Definition: speckley/src/SpeckleyDomain.h:192
int index_t
type for array/matrix indices used both globally and on each rank
Definition: DataTypes.h:59
virtual void MPIBarrier() const
if compiled for MPI then executes an MPI_Barrier, else does nothing
Definition: speckley/src/SpeckleyDomain.h:121
std::vector< int > reverse
if non-zero, values are written from last index to first index
Definition: speckley/src/SpeckleyDomain.h:61
A struct to contain a dirac point's information.
Definition: speckley/src/SpeckleyDomain.h:72
boost::shared_ptr< SubWorld > SubWorld_ptr
Definition: SubWorld.h:146
virtual bool onMasterProcessor() const
returns true if on MPI processor 0, else false
Definition: speckley/src/SpeckleyDomain.h:131
Definition: Speckley.h:49
int getOrder() const
returns the order of the domain
Definition: speckley/src/SpeckleyDomain.h:725
virtual int getReducedFunctionCode() const
returns a function with reduced integration order FunctionSpace code
Definition: speckley/src/SpeckleyDomain.h:390
int StatusType
Definition: AbstractDomain.h:48
virtual bool isValidTagName(const std::string &name) const
returns true if name is a defined tag name
Definition: speckley/src/SpeckleyDomain.h:214
escript::Data readNcGrid(std::string filename, std::string varname, escript::FunctionSpace fs, const object &pyShape, double fill, const object &pyFirst, const object &pyNum, const object &pyMultiplier, const object &pyReverse)
Definition: speckleycpp.cpp:114
Data represents a collection of datapoints.
Definition: Data.h:63
virtual int getTag(const std::string &name) const
returns the tag key for tag name
Definition: speckley/src/SpeckleyDomain.h:201
std::vector< index_t > IndexVector
Definition: Speckley.h:42
SpeckleyException exception class.
Definition: SpeckleyException.h:29
virtual int getReducedFunctionOnContactOneCode() const
returns a FunctionOnContactOne code with reduced integration order
Definition: speckley/src/SpeckleyDomain.h:439
int dataType
data type in the file (used by binary reader only)
Definition: speckley/src/SpeckleyDomain.h:65
virtual StatusType getStatus() const
returns a status indicator of the domain. The status identifier should be unique over the lifetime of...
Definition: speckley/src/SpeckleyDomain.h:334
assembler_t
Definition: speckley/src/SpeckleyDomain.h:35
escript::Data readBinaryGrid(std::string filename, escript::FunctionSpace fs, const object &pyShape, double fill, int byteOrder, int dataType, const object &pyFirst, const object &pyNum, const object &pyMultiplier, const object &pyReverse)
Definition: speckleycpp.cpp:60
escript::JMPI m_mpiInfo
Definition: speckley/src/SpeckleyDomain.h:730
int MPI_Comm
Definition: EsysMPI.h:41
std::map< std::string, int > simap_t
Definition: speckley/src/SpeckleyDomain.h:44
std::map< std::string, int > TagMap
Definition: Speckley.h:44
dim_t node
Definition: speckley/src/SpeckleyDomain.h:74
Give a short description of what AbstractTransportProblem does.
Definition: AbstractTransportProblem.h:43
virtual int getFunctionOnContactZeroCode() const
return a FunctionOnContactZero code
Definition: speckley/src/SpeckleyDomain.h:415
Base class for escript system matrices.
Definition: AbstractSystemMatrix.h:42
int m_numDim
Definition: speckley/src/SpeckleyDomain.h:728
std::vector< int > multiplier
Definition: speckley/src/SpeckleyDomain.h:59
virtual int getReducedFunctionOnContactZeroCode() const
returns a FunctionOnContactZero code with reduced integration order
Definition: speckley/src/SpeckleyDomain.h:423
boost::shared_ptr< AbstractSystemMatrix > ASM_ptr
Definition: AbstractSystemMatrix.h:32
std::vector< dim_t > numValues
the number of values to read from file
Definition: speckley/src/SpeckleyDomain.h:56
virtual int getContinuousFunctionCode() const
returns a continuous FunctionSpace code
Definition: speckley/src/SpeckleyDomain.h:370
Definition: Speckley.h:51
Base class for all escript domains.
Definition: AbstractDomain.h:45
int tag
Definition: speckley/src/SpeckleyDomain.h:75
virtual int getSolutionCode() const
returns a Solution FunctionSpace code
Definition: speckley/src/SpeckleyDomain.h:447
std::vector< DiracPoint > m_diracPoints
Definition: speckley/src/SpeckleyDomain.h:734
index_t dim_t
Definition: DataTypes.h:64
virtual Assembler_ptr createAssembler(const std::string type, const DataMap &options) const
Definition: speckley/src/SpeckleyDomain.h:707