17 #ifndef __RIPLEY_BRICK_H__ 18 #define __RIPLEY_BRICK_H__ 20 #include <ripley/RipleyDomain.h> 43 double x1,
double y1,
double z1,
int d0=-1,
int d1=-1,
int d2=-1,
44 const std::vector<double>& points = std::vector<double>(),
45 const std::vector<int>& tags = std::vector<int>(),
59 virtual std::string getDescription()
const;
71 virtual void write(
const std::string& filename)
const;
78 void dump(
const std::string& filename)
const;
97 int byteOrder,
int dataType)
const;
104 const dim_t* borrowSampleReferenceIDs(
int fsType)
const;
110 virtual bool ownSample(
int fsType,
index_t id)
const;
131 virtual dim_t getNumDataPointsGlobal()
const;
138 virtual void Print_Mesh_Info(
const bool full=
false)
const;
175 virtual double getLocalCoordinate(
index_t index,
int dim)
const;
181 virtual boost::python::tuple getGridParameters()
const;
190 const boost::python::tuple& filter)
const;
192 virtual Assembler_ptr createAssembler(std::string type,
211 virtual RankVector getOwnerVector(
int fsType)
const;
214 virtual dim_t getNumNodes()
const;
215 virtual dim_t getNumElements()
const;
216 virtual dim_t getNumFaceElements()
const;
217 virtual dim_t getNumDOF()
const;
218 virtual dim_t getNumDOFInAxis(
unsigned axis)
const;
219 virtual dim_t getFirstInDim(
unsigned axis)
const;
221 virtual IndexVector getDiagonalIndices(
bool upperOnly)
const;
227 virtual std::vector<IndexVector> getConnections(
bool includeShared=
false)
const;
228 #ifdef ESYS_HAVE_TRILINOS 229 virtual esys_trilinos::const_TrilinosGraph_ptr getTrilinosGraph()
const;
232 #ifdef ESYS_HAVE_PASO 234 bool reducedRowOrder,
bool reducedColOrder)
const;
244 void populateSampleIds();
245 void populateDofMap();
247 template<
typename Scalar>
249 const std::vector<Scalar>& EM_S,
const std::vector<Scalar>& EM_F,
250 bool addS,
bool addF,
index_t firstNode,
int nEq=1,
int nComp=1)
const;
252 template<
typename ValueType>
253 void readBinaryGridImpl(
escript::Data& out,
const std::string& filename,
255 #ifdef ESYS_HAVE_BOOST_IO 256 template<
typename ValueType>
258 const std::string& filename,
261 template<
typename ValueType>
263 const std::string& filename,
int byteOrder)
const;
265 dim_t findNode(
const double *coords)
const;
269 const boost::python::tuple& filter)
const;
318 #ifdef ESYS_HAVE_PASO 323 #ifdef ESYS_HAVE_TRILINOS 324 mutable esys_trilinos::const_TrilinosGraph_ptr m_graph;
332 return m_dofMap[node];
337 return (m_gNE[0]+1)*(m_gNE[1]+1)*(m_gNE[2]+1);
342 ESYS_ASSERT(dim>=0 && dim<3,
"'dim' out of bounds");
343 ESYS_ASSERT(index>=0 && index<m_NN[dim],
"'index' out of bounds");
344 return m_origin[dim]+m_dx[dim]*(m_offset[dim]+index);
349 return boost::python::make_tuple(
350 boost::python::make_tuple(m_origin[0], m_origin[1], m_origin[2]),
351 boost::python::make_tuple(m_dx[0], m_dx[1], m_dx[2]),
352 boost::python::make_tuple(m_gNE[0], m_gNE[1], m_gNE[2]));
358 return (m_gNE[0]+1)/m_NX[0]*(m_gNE[1]+1)/m_NX[1]*(m_gNE[2]+1)/m_NX[2];
365 return (m_gNE[axis]+1)/m_NX[axis];
371 return m_NN[0]*m_NN[1]*m_NN[2];
377 return m_NE[0]*m_NE[1]*m_NE[2];
383 return m_faceCount[0] + m_faceCount[1] + m_faceCount[2]
384 + m_faceCount[3] + m_faceCount[4] + m_faceCount[5];
390 return m_offset[axis] == 0 ? 0 : 1;
395 #endif // __RIPLEY_BRICK_H__ Definition: FunctionSpace.h:34
std::vector< int > RankVector
Definition: Ripley.h:45
escript::Data readNcGrid(std::string filename, std::string varname, escript::FunctionSpace fs, const object &pyShape, double fill, const object &pyFirst, const object &pyNum, const object &pyMultiplier, const object &pyReverse)
Definition: ripleycpp.cpp:116
virtual const dim_t * getNumFacesPerBoundary() const
returns the number of face elements in the order (left,right,bottom,top,front,back) on current MPI ra...
Definition: ripley/src/Brick.h:157
virtual const dim_t * getNumElementsPerDim() const
returns the number of elements per MPI rank in each dimension
Definition: ripley/src/Brick.h:150
const double * getElementLength() const
returns the lengths of an element
Definition: ripley/src/Brick.h:204
std::vector< int > ShapeType
The shape of a single datapoint.
Definition: DataTypes.h:42
escript::Data readBinaryGrid(std::string filename, escript::FunctionSpace fs, const object &pyShape, double fill, int byteOrder, int dataType, const object &pyFirst, const object &pyNum, const object &pyMultiplier, const object &pyReverse)
Definition: ripleycpp.cpp:62
virtual dim_t getNumDOF() const
returns the number of degrees of freedom per MPI rank
Definition: ripley/src/Brick.h:356
boost::shared_ptr< SystemMatrixPattern > SystemMatrixPattern_ptr
Definition: SystemMatrixPattern.h:39
virtual dim_t getDofOfNode(dim_t node) const
Definition: ripley/src/Brick.h:330
std::map< std::string, int > TagMap
Definition: Ripley.h:46
IndexVector m_nodeDistribution
Definition: ripley/src/Brick.h:313
int index_t
type for array/matrix indices used both globally and on each rank
Definition: DataTypes.h:59
std::vector< index_t > IndexVector
Definition: Ripley.h:43
std::map< std::string, escript::Data > DataMap
Definition: ripley/src/domainhelpers.h:24
virtual dim_t getFirstInDim(unsigned axis) const
Definition: ripley/src/Brick.h:388
boost::shared_ptr< SubWorld > SubWorld_ptr
Definition: SubWorld.h:146
Structure that wraps parameters for the grid reading routines.
Definition: ripley/src/RipleyDomain.h:68
Data represents a collection of datapoints.
Definition: Data.h:63
virtual const int * getNumSubdivisionsPerDim() const
returns the number of spatial subdivisions in each dimension
Definition: ripley/src/Brick.h:169
RipleyDomain extends the AbstractContinuousDomain interface for the Ripley library and is the base cl...
Definition: ripley/src/RipleyDomain.h:101
Definition: ripley/src/WaveAssembler3D.h:24
Definition: LameAssembler3D.h:24
virtual dim_t getNumNodes() const
returns the number of nodes per MPI rank
Definition: ripley/src/Brick.h:369
virtual dim_t getNumDOFInAxis(unsigned axis) const
Definition: ripley/src/Brick.h:362
Brick is the 3-dimensional implementation of a RipleyDomain.
Definition: ripley/src/Brick.h:28
virtual const dim_t * getNumNodesPerDim() const
returns the number of nodes per MPI rank in each dimension
Definition: ripley/src/Brick.h:144
virtual IndexVector getNodeDistribution() const
returns the node distribution vector
Definition: ripley/src/Brick.h:163
Definition: ripley/src/DefaultAssembler3D.h:24
virtual boost::python::tuple getGridParameters() const
returns the tuple (origin, spacing, number_of_elements)
Definition: ripley/src/Brick.h:347
virtual double getLocalCoordinate(index_t index, int dim) const
returns the index'th coordinate value in given dimension for this rank
Definition: ripley/src/Brick.h:340
virtual dim_t getNumFaceElements() const
returns the number of face elements on current MPI rank
Definition: ripley/src/Brick.h:381
const double * getLength() const
returns the lengths of the domain
Definition: ripley/src/Brick.h:198
Base class for escript system matrices.
Definition: AbstractSystemMatrix.h:42
IndexVector m_nodeId
Definition: ripley/src/Brick.h:308
IndexVector m_dofId
vector of sample reference identifiers
Definition: ripley/src/Brick.h:307
Definition: ripley/src/AbstractAssembler.h:25
std::vector< real_t > DoubleVector
Definition: Ripley.h:44
escript::Data readBinaryGridFromZipped(std::string filename, escript::FunctionSpace fs, const object &pyShape, double fill, int byteOrder, int dataType, const object &pyFirst, const object &pyNum, const object &pyMultiplier, const object &pyReverse)
Definition: ripleycpp.cpp:87
Base class for all escript domains.
Definition: AbstractDomain.h:45
#define ESYS_ASSERT(a, b)
EsysAssert is a MACRO that will throw an exception if the boolean condition specified is false...
Definition: Assert.h:78
virtual dim_t getNumElements() const
returns the number of elements per MPI rank
Definition: ripley/src/Brick.h:375
#define RIPLEY_DLL_API
Definition: ripley/src/system_dep.h:20
IndexVector m_faceId
Definition: ripley/src/Brick.h:310
IndexVector m_elementId
Definition: ripley/src/Brick.h:309
#define S(_J_, _I_)
Definition: ShapeFunctions.cpp:121
IndexVector m_dofMap
Definition: ripley/src/Brick.h:316
index_t dim_t
Definition: DataTypes.h:64
virtual dim_t getNumDataPointsGlobal() const
returns the number of data points summed across all MPI processes
Definition: ripley/src/Brick.h:335
IndexVector m_faceOffset
Definition: ripley/src/Brick.h:304