Source code for PyMca5.PyMcaPlugins.FitStackPlugin

#/*##########################################################################
# Copyright (C) 2004-2014 V.A. Sole, European Synchrotron Radiation Facility
#
# This file is part of the PyMca X-ray Fluorescence Toolkit developed at
# the ESRF by the Software group.
#
# Permission is hereby granted, free of charge, to any person obtaining a copy
# of this software and associated documentation files (the "Software"), to deal
# in the Software without restriction, including without limitation the rights
# to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
# copies of the Software, and to permit persons to whom the Software is
# furnished to do so, subject to the following conditions:
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# The above copyright notice and this permission notice shall be included in
# all copies or substantial portions of the Software.
#
# THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
# IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
# FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
# AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
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# THE SOFTWARE.
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__author__ = "V.A. Sole - ESRF Data Analysis"
__contact__ = "sole@esrf.fr"
__license__ = "MIT"
__copyright__ = "European Synchrotron Radiation Facility, Grenoble, France"
"""

A Stack plugin is a module that will be automatically added to the PyMca stack windows
in order to perform user defined operations on the data stack.

These plugins will be compatible with any stack window that provides the functions:
    #data related
    getStackDataObject
    getStackData
    getStackInfo
    setStack

    #images related
    addImage
    removeImage
    replaceImage

    #mask related
    setSelectionMask
    getSelectionMask

    #displayed curves
    getActiveCurve
    getGraphXLimits
    getGraphYLimits

    #information method
    stackUpdated
    selectionMaskUpdated
"""
try:
    from PyMca5 import StackPluginBase
    from PyMca5.PyMcaGui import StackSimpleFitWindow
    from PyMca5.PyMcaGui import PyMca_Icons
except ImportError:
    print("FitStackPlugin importing from somewhere else")

DEBUG = 0

[docs]class FitStackPlugin(StackPluginBase.StackPluginBase): def __init__(self, stackWindow, **kw): StackPluginBase.DEBUG = DEBUG StackPluginBase.StackPluginBase.__init__(self, stackWindow, **kw) self.methodDict = {} function = self.fitStack info = "Fit stack with user defined functions" icon = PyMca_Icons.fit self.methodDict["Fit Stack"] =[function, info, icon] self.__methodKeys = ["Fit Stack"] self.simpleFitWindow = None
[docs] def stackUpdated(self): if self.simpleFitWindow is None: return self.__updateOwnData()
[docs] def selectionMaskUpdated(self): if self.simpleFitWindow is None: return self.simpleFitWindow.setMask(self.getStackSelectionMask())
#Methods implemented by the plugin
[docs] def getMethods(self): return self.__methodKeys
[docs] def getMethodToolTip(self, name): return self.methodDict[name][1]
[docs] def getMethodPixmap(self, name): return self.methodDict[name][2]
[docs] def applyMethod(self, name): return self.methodDict[name][0]()
def __updateOwnData(self): activeCurve = self.getActiveCurve() if activeCurve is None: return #this can be problematic if a fit is going on... x, spectrum, legend, info = activeCurve xlabel = info['xlabel'] ylabel = info['ylabel'] xmin, xmax = self.getGraphXLimits() ymin, ymax = self.getGraphYLimits() mcaIndex = self.getStackInfo()['McaIndex'] self.simpleFitWindow.setSpectrum(x, spectrum, xmin=xmin, xmax=xmax) self.simpleFitWindow.setData(x, self.getStackData(), data_index=mcaIndex, mask=self.getStackSelectionMask())
[docs] def fitStack(self): if self.simpleFitWindow is None: self.simpleFitWindow = StackSimpleFitWindow.StackSimpleFitWindow() self.__updateOwnData() self.simpleFitWindow.show()
MENU_TEXT = "Stack Simple Fitting"
[docs]def getStackPluginInstance(stackWindow, **kw): ob = FitStackPlugin(stackWindow) return ob