Source code for PyMca5.PyMcaPlugins.ReverseStackPlugin

#/*##########################################################################
# Copyright (C) 2004-2014 V.A. Sole, European Synchrotron Radiation Facility
#
# This file is part of the PyMca X-ray Fluorescence Toolkit developed at
# the ESRF by the Software group.
#
# Permission is hereby granted, free of charge, to any person obtaining a copy
# of this software and associated documentation files (the "Software"), to deal
# in the Software without restriction, including without limitation the rights
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# copies of the Software, and to permit persons to whom the Software is
# furnished to do so, subject to the following conditions:
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# The above copyright notice and this permission notice shall be included in
# all copies or substantial portions of the Software.
#
# THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
# IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
# FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
# AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
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# OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN
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__author__ = "V.A. Sole - ESRF Data Analysis"
__contact__ = "sole@esrf.fr"
__license__ = "MIT"
__copyright__ = "European Synchrotron Radiation Facility, Grenoble, France"
"""

A Stack plugin is a module that will be automatically added to the PyMca stack windows
in order to perform user defined operations on the data stack.

These plugins will be compatible with any stack window that provides the functions:
    #data related
    getStackDataObject
    getStackData
    getStackInfo
    setStack

    #images related
    addImage
    removeImage
    replaceImage

    #mask related
    setSelectionMask
    getSelectionMask

    #displayed curves
    getActiveCurve
    getGraphXLimits
    getGraphYLimits

    #information method
    stackUpdated
    selectionMaskUpdated
"""
import numpy
from PyMca5 import StackPluginBase

DEBUG = 0

[docs]class ReverseStackPlugin(StackPluginBase.StackPluginBase): def __init__(self, stackWindow, **kw): StackPluginBase.DEBUG = DEBUG StackPluginBase.StackPluginBase.__init__(self, stackWindow, **kw) self.methodDict = {} text = "Replace current stack by one\n" text += "with odd rows reversed." function = self.reverseOddRows info = text icon = None self.methodDict["Reverse Odd Rows"] =[function, info, icon] text = "Replace current stack by one\n" text += "with even rows reversed." function = self.reverseEvenRows info = text icon = None self.methodDict["Reverse Even Rows"] =[function, info, icon] text = "Replace current stack by one\n" text += "with odd columns reversed." function = self.reverseOddColumns info = text icon = None self.methodDict["Reverse Odd Columns"] =[function, info, icon] text = "Replace current stack by one\n" text += "with odd columns reversed." function = self.reverseEvenColumns info = text icon = None self.methodDict["Reverse Even Columns"] =[function, info, icon] self.__methodKeys = ["Reverse Odd Rows", "Reverse Even Rows", "Reverse Odd Columns", "Reverse Even Columns"] #Methods implemented by the plugin
[docs] def getMethods(self): return self.__methodKeys
[docs] def getMethodToolTip(self, name): return self.methodDict[name][1]
[docs] def getMethodPixmap(self, name): return self.methodDict[name][2]
[docs] def applyMethod(self, name): return self.methodDict[name][0]()
[docs] def reverseOddRows(self): self.reverseRows(offset=1)
[docs] def reverseEvenRows(self): self.reverseRows(offset=0)
[docs] def reverseOddColumns(self): self.reverseColumns(offset=1)
[docs] def reverseEvenColumns(self): self.reverseColumns(offset=0)
[docs] def reverseRows(self, offset=1): stack = self.getStackDataObject() if not isinstance(stack.data, numpy.ndarray): text = "This method does not work with dynamically loaded stacks" raise TypeError(text) mcaIndex = stack.info.get('McaIndex', -1) if mcaIndex in [-1, 2]: ndata = stack.data.shape[1] limit = 0.5 * ndata for i in range(offset, stack.data.shape[0], 2): j = 0 while j < limit: tmp = stack.data[i, j, :] * 1 stack.data[i, j, :] = stack.data[i,(ndata-j-1),:] * 1 stack.data[i,(ndata-j-1),:] = tmp j += 1 elif mcaIndex == 0: ndata = stack.data.shape[2] limit = 0.5 * ndata for i in range(offset, stack.data.shape[1], 2): j = 0 while j < limit: tmp = stack.data[:, i, j] * 1 stack.data[:, i, j] = stack.data[:, i,(ndata-j-1)] * 1 stack.data[:, i,(ndata-j-1)] = tmp j += 1 else: raise ValueError("Invalid 1D index %d" % mcaIndex) self.setStack(stack)
[docs] def reverseColumns(self, offset=1): stack = self.getStackDataObject() if not isinstance(stack.data, numpy.ndarray): text = "This method does not work with dynamically loaded stacks" raise TypeError(text) mcaIndex = stack.info.get('McaIndex', -1) if mcaIndex in [-1, 2]: ndata = stack.data.shape[0] limit = 0.5 * ndata for i in range(offset, stack.data.shape[1], 2): j = 0 while j < limit: tmp = stack.data[j, i, :] * 1 stack.data[j, i, :] = stack.data[(ndata-j-1), i,:] * 1 stack.data[(ndata-j-1), i,:] = tmp j += 1 elif mcaIndex == 0: ndata = stack.data.shape[1] limit = 0.5 * ndata for i in range(offset, stack.data.shape[2], 2): j = 0 while j < limit: tmp = stack.data[:, j, i] * 1 stack.data[:, j, i] = stack.data[:,(ndata-j-1), i] * 1 stack.data[:, (ndata-j-1), i] = tmp j += 1 else: raise ValueError("Invalid 1D index %d" % mcaIndex) self.setStack(stack)
MENU_TEXT = "Stack Row or Column Reversing"
[docs]def getStackPluginInstance(stackWindow, **kw): ob = ReverseStackPlugin(stackWindow) return ob