public class IndependentReplicateMetric extends MergeableMetricBase
MergeableMetricBase.MergeByAdding, MergeableMetricBase.MergeByAssertEquals, MergeableMetricBase.MergingIsManual, MergeableMetricBase.NoMergingIsDerived, MergeableMetricBase.NoMergingKeepsValue
Constructor and Description |
---|
IndependentReplicateMetric() |
Modifier and Type | Method and Description |
---|---|
void |
calculateDerivedFields()
placeholder method that will calculate the derived fields from the other ones.
|
canMerge, merge, merge, mergeIfCan
public Integer nSites
public Integer nThreeAllelesSites
public Integer nTotalReads
public Integer nDuplicateSets
public Integer nExactlyTriple
public Integer nExactlyDouble
public Integer nReadsInBigSets
public Integer nDifferentAllelesBiDups
public Integer nReferenceAllelesBiDups
public Integer nAlternateAllelesBiDups
public Integer nDifferentAllelesTriDups
public Integer nMismatchingAllelesBiDups
public Integer nReferenceAllelesTriDups
public Integer nAlternateAllelesTriDups
public Integer nMismatchingAllelesTriDups
public Integer nReferenceReads
public Integer nAlternateReads
public Integer nMismatchingUMIsInDiffBiDups
public Integer nMatchingUMIsInDiffBiDups
public Integer nMismatchingUMIsInSameBiDups
public Integer nMatchingUMIsInSameBiDups
public Integer nMismatchingUMIsInCoOrientedBiDups
public Integer nMismatchingUMIsInContraOrientedBiDups
public Integer nBadBarcodes
public Integer nGoodBarcodes
public Double biSiteHeterogeneityRate
public Double triSiteHeterogeneityRate
public Double biSiteHomogeneityRate
public Double triSiteHomogeneityRate
public Double independentReplicationRateFromBiDups
public Double independentReplicationRateFromTriDups
public Double pSameUmiInIndependentBiDup
public Double pSameAlleleWhenMismatchingUmi
public Double independentReplicationRateFromUmi
public Double replicationRateFromReplicateSets
public void calculateDerivedFields()
MergeableMetricBase
calculateDerivedFields
in class MergeableMetricBase