public class MakeSitesOnlyVcf extends CommandLineProgram
Modifier and Type | Field and Description |
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File |
INPUT |
File |
OUTPUT |
Set<String> |
SAMPLE |
COMPRESSION_LEVEL, CREATE_INDEX, CREATE_MD5_FILE, GA4GH_CLIENT_SECRETS, MAX_RECORDS_IN_RAM, QUIET, REFERENCE_SEQUENCE, TMP_DIR, VALIDATION_STRINGENCY, VERBOSITY
Constructor and Description |
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MakeSitesOnlyVcf() |
Modifier and Type | Method and Description |
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protected int |
doWork()
Do the work after command line has been parsed.
|
static void |
main(String[] args) |
customCommandLineValidation, getCommandLine, getCommandLineParser, getDefaultHeaders, getMetricsFile, getNestedOptions, getNestedOptionsForHelp, getStandardUsagePreamble, getVersion, instanceMain, instanceMainWithExit, parseArgs, setDefaultHeaders
@Option(shortName="O", doc="Output VCF or BCF to emit without per-sample info.") public File OUTPUT
public static void main(String[] args)
protected int doWork()
CommandLineProgram
doWork
in class CommandLineProgram