public class ReadEndsForMarkDuplicatesCodec extends Object implements htsjdk.samtools.util.SortingCollection.Codec<ReadEndsForMarkDuplicates>
Modifier and Type | Field and Description |
---|---|
protected DataInputStream |
in |
protected DataOutputStream |
out |
Constructor and Description |
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ReadEndsForMarkDuplicatesCodec() |
Modifier and Type | Method and Description |
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htsjdk.samtools.util.SortingCollection.Codec<ReadEndsForMarkDuplicates> |
clone() |
ReadEndsForMarkDuplicates |
decode() |
void |
encode(ReadEndsForMarkDuplicates read) |
DataInputStream |
getInputStream() |
DataOutputStream |
getOutputStream() |
void |
setInputStream(InputStream is) |
void |
setOutputStream(OutputStream os) |
protected DataInputStream in
protected DataOutputStream out
public htsjdk.samtools.util.SortingCollection.Codec<ReadEndsForMarkDuplicates> clone()
clone
in interface htsjdk.samtools.util.SortingCollection.Codec<ReadEndsForMarkDuplicates>
clone
in class Object
public void setOutputStream(OutputStream os)
setOutputStream
in interface htsjdk.samtools.util.SortingCollection.Codec<ReadEndsForMarkDuplicates>
public void setInputStream(InputStream is)
setInputStream
in interface htsjdk.samtools.util.SortingCollection.Codec<ReadEndsForMarkDuplicates>
public DataInputStream getInputStream()
public DataOutputStream getOutputStream()
public void encode(ReadEndsForMarkDuplicates read)
encode
in interface htsjdk.samtools.util.SortingCollection.Codec<ReadEndsForMarkDuplicates>
public ReadEndsForMarkDuplicates decode()
decode
in interface htsjdk.samtools.util.SortingCollection.Codec<ReadEndsForMarkDuplicates>