Class PhysicalLocationForMateCigarSet


  • public class PhysicalLocationForMateCigarSet
    extends Object
    This stores records that are comparable for detecting optical duplicates.
    • Constructor Detail

      • PhysicalLocationForMateCigarSet

        public PhysicalLocationForMateCigarSet()
    • Method Detail

      • add

        public void add​(ReadEndsForMateCigar end)
        Adds the end to this set, if not already added based on physical location
      • size

        public int size()
        The number of records in this set
      • remove

        public void remove​(ReadEndsForMateCigar end)
        Removes the end from this set, if present
      • getReadEnds

        public Set<ReadEnds> getReadEnds()
        Gets the set of read ends