petsc-3.14.4 2021-02-03
#
# This is the makefile for compiling PETSc. See
# http://www.mcs.anl.gov/petsc/documentation/installation.html for directions on installing PETSc.
# See also conf for additional commands.
#
ALL: all
LOCDIR = ./
DIRS = src include tutorials interfaces share/petsc/matlab
CFLAGS =
FFLAGS =
CPPFLAGS =
FPPFLAGS =
# next line defines PETSC_DIR and PETSC_ARCH if they are not set
include ././${PETSC_ARCH}/lib/petsc/conf/petscvariables
include ${PETSC_DIR}/lib/petsc/conf/variables
include ${PETSC_DIR}/lib/petsc/conf/rules
include ${PETSC_DIR}/lib/petsc/conf/test.common
# This makefile contains a lot of PHONY targets with improperly specified prerequisites
# where correct execution instead depends on the targets being processed in the correct
# order. This is gross, but this makefile doesn't really do any work. Sub-makes still
# benefit from parallelism.
.NOTPARALLEL:
OMAKE_SELF = $(OMAKE) -f makefile
OMAKE_SELF_PRINTDIR = $(OMAKE_PRINTDIR) -f makefile
#
# Basic targets to build PETSc libraries.
#
all:
+@${OMAKE_SELF} PETSC_ARCH=${PETSC_ARCH} PETSC_DIR=${PETSC_DIR} chk_petscdir chk_upgrade | tee ${PETSC_ARCH}/lib/petsc/conf/make.log
@ln -sf ${PETSC_ARCH}/lib/petsc/conf/make.log make.log
+@${OMAKE_SELF_PRINTDIR} PETSC_ARCH=${PETSC_ARCH} PETSC_DIR=${PETSC_DIR} all-local 2>&1 | tee -a ${PETSC_ARCH}/lib/petsc/conf/make.log;
@egrep '(out of memory allocating.*after a total of|gfortran: fatal error: Killed signal terminated program f951)' ${PETSC_ARCH}/lib/petsc/conf/make.log | tee ${PETSC_ARCH}/lib/petsc/conf/memoryerror.log > /dev/null
@egrep -i "( error | error: |no such file or directory)" ${PETSC_ARCH}/lib/petsc/conf/make.log | tee ${PETSC_ARCH}/lib/petsc/conf/error.log > /dev/null
+@if test -s ${PETSC_ARCH}/lib/petsc/conf/memoryerror.log; then \
printf ${PETSC_TEXT_HILIGHT}"**************************ERROR*************************************\n" 2>&1 | tee -a ${PETSC_ARCH}/lib/petsc/conf/make.log; \
echo " Error during compile, you need to increase the memory allocated to the VM and rerun " 2>&1 | tee -a ${PETSC_ARCH}/lib/petsc/conf/make.log; \
printf "********************************************************************"${PETSC_TEXT_NORMAL}"\n" 2>&1 | tee -a ${PETSC_ARCH}/lib/petsc/conf/make.log;\
elif test -s ${PETSC_ARCH}/lib/petsc/conf/error.log; then \
printf ${PETSC_TEXT_HILIGHT}"**************************ERROR*************************************\n" 2>&1 | tee -a ${PETSC_ARCH}/lib/petsc/conf/make.log; \
echo " Error during compile, check ${PETSC_ARCH}/lib/petsc/conf/make.log" 2>&1 | tee -a ${PETSC_ARCH}/lib/petsc/conf/make.log; \
echo " Send it and ${PETSC_ARCH}/lib/petsc/conf/configure.log to petsc-maint@mcs.anl.gov" 2>&1 | tee -a ${PETSC_ARCH}/lib/petsc/conf/make.log;\
printf "********************************************************************"${PETSC_TEXT_NORMAL}"\n" 2>&1 | tee -a ${PETSC_ARCH}/lib/petsc/conf/make.log;\
else \
${OMAKE_SELF} print_mesg_after_build PETSC_ARCH=${PETSC_ARCH} PETSC_DIR=${PETSC_DIR} 2>&1 | tee -a ${PETSC_ARCH}/lib/petsc/conf/make.log ;\
fi #solaris make likes to print the whole command that gave error. So split this up into the smallest chunk below
@echo "Finishing make run at `date +'%a, %d %b %Y %H:%M:%S %z'`" >> ${PETSC_ARCH}/lib/petsc/conf/make.log
@if test -s ${PETSC_ARCH}/lib/petsc/conf/error.log; then exit 1; fi
all-local: info libs matlabbin mpi4py-build petsc4py-build libmesh-build mfem-build slepc-build hpddm-build amrex-build bamg-build
#
# Prints information about the system and version of PETSc being compiled
#
info:
-@echo "=========================================="
-@echo " "
-@echo "See documentation/faq.html and documentation/bugreporting.html"
-@echo "for help with installation problems. Please send EVERYTHING"
-@echo "printed out below when reporting problems. Please check the"
-@echo "mailing list archives and consider subscribing."
-@echo " "
-@echo " http://www.mcs.anl.gov/petsc/miscellaneous/mailing-lists.html"
-@echo " "
-@echo "=========================================="
-@echo Starting make run on `hostname` at `date +'%a, %d %b %Y %H:%M:%S %z'`
-@echo Machine characteristics: `uname -a`
-@echo "-----------------------------------------"
-@echo "Using PETSc directory: ${PETSC_DIR}"
-@echo "Using PETSc arch: ${PETSC_ARCH}"
-@echo "-----------------------------------------"
-@grep "define PETSC_VERSION" ${PETSC_DIR}/include/petscversion.h | ${SED} "s/........//"
-@echo "-----------------------------------------"
-@echo "Using configure Options: ${CONFIGURE_OPTIONS}"
-@echo "Using configuration flags:"
-@grep "\#define " ${PETSCCONF_H}
-@echo "-----------------------------------------"
-@echo "Using C compile: ${PETSC_CCOMPILE_SINGLE}"
-@if [ "${MPICC_SHOW}" != "" ]; then \
printf "mpicc -show: %b\n" "${MPICC_SHOW}";\
fi; \
printf "C compiler version: %b\n" "${C_VERSION}"; \
if [ "${CXX}" != "" ]; then \
echo "Using C++ compile: ${PETSC_CXXCOMPILE_SINGLE}";\
if [ "${MPICXX_SHOW}" != "" ]; then \
printf "mpicxx -show: %b\n" "${MPICXX_SHOW}"; \
fi;\
printf "C++ compiler version: %b\n" "${Cxx_VERSION}"; \
fi
-@if [ "${FC}" != "" ]; then \
echo "Using Fortran compile: ${PETSC_FCOMPILE_SINGLE}";\
if [ "${MPIFC_SHOW}" != "" ]; then \
printf "mpif90 -show: %b\n" "${MPIFC_SHOW}"; \
fi; \
printf "Fortran compiler version: %b\n" "${FC_VERSION}"; \
fi
-@if [ "${CUDAC}" != "" ]; then \
echo "Using CUDA compile: ${PETSC_CUCOMPILE_SINGLE}";\
fi
-@if [ "${CLANGUAGE}" = "CXX" ]; then \
echo "Using C++ compiler to compile PETSc";\
fi
-@echo "-----------------------------------------"
-@echo "Using C/C++ linker: ${PCC_LINKER}"
-@echo "Using C/C++ flags: ${PCC_LINKER_FLAGS}"
-@if [ "${FC}" != "" ]; then \
echo "Using Fortran linker: ${FC_LINKER}";\
echo "Using Fortran flags: ${FC_LINKER_FLAGS}";\
fi
-@echo "-----------------------------------------"
-@echo "Using system modules: ${LOADEDMODULES}"
-@if [ "${MPI_IS_MPIUNI}" = "1" ]; then \
echo Using mpi.h: mpiuni; \
else \
TESTDIR=`mktemp -q -d -t petscmpi-XXXXXXXX` && \
echo '#include ' > $${TESTDIR}/mpitest.c && \
BUF=`${CPP} ${PETSC_CPPFLAGS} ${PETSC_CC_INCLUDES} $${TESTDIR}/mpitest.c |grep 'mpi\.h' | ( head -1 ; cat > /dev/null )` && \
echo Using mpi.h: $${BUF}; ${RM} -rf $${TESTDIR}; \
fi
-@echo "-----------------------------------------"
-@echo "Using libraries: ${PETSC_LIB}"
-@echo "------------------------------------------"
-@echo "Using mpiexec: ${MPIEXEC}"
-@echo "------------------------------------------"
-@echo "Using MAKE: $(MAKE)"
-@echo "Using MAKEFLAGS: -j$(MAKE_NP) -l$(MAKE_LOAD) $(MAKEFLAGS)"
-@echo "=========================================="
#
# Build MatLab binaries
#
matlabbin:
-@if [ "${MATLAB_MEX}" != "" -a "${MATLAB_SOCKET}" != "" -a "${PETSC_SCALAR}" = "real" -a "${PETSC_PRECISION}" = "double" ]; then \
echo "BEGINNING TO COMPILE MATLAB INTERFACE"; \
if [ ! -d "${PETSC_DIR}/${PETSC_ARCH}/lib/petsc" ] ; then ${MKDIR} ${PETSC_DIR}/${PETSC_ARCH}/lib/petsc; fi; \
if [ ! -d "${PETSC_DIR}/${PETSC_ARCH}/lib/petsc/matlab" ] ; then ${MKDIR} ${PETSC_DIR}/${PETSC_ARCH}/lib/petsc/matlab; fi; \
cd src/sys/classes/viewer/impls/socket/matlab && ${OMAKE_SELF} matlabcodes PETSC_ARCH=${PETSC_ARCH} PETSC_DIR=${PETSC_DIR}; \
echo "========================================="; \
fi
#
# Builds PETSc check examples for a given architecture
#
check_install: check
check:
-+@${OMAKE_SELF} PATH="${PETSC_DIR}/${PETSC_ARCH}/lib:${PATH}" PETSC_ARCH=${PETSC_ARCH} PETSC_DIR=${PETSC_DIR} check_build 2>&1 | tee ./${PETSC_ARCH}/lib/petsc/conf/check.log
checkx:
-@${OMAKE_SELF} PETSC_ARCH=${PETSC_ARCH} PETSC_DIR=${PETSC_DIR} checkx_build 2>&1 | tee ./${PETSC_ARCH}/lib/petsc/conf/checkx.log
check_build:
-@echo "Running check examples to verify correct installation"
-@echo "Using PETSC_DIR=${PETSC_DIR} and PETSC_ARCH=${PETSC_ARCH}"
+@cd src/snes/tutorials >/dev/null; ${OMAKE_SELF} PETSC_ARCH=${PETSC_ARCH} PETSC_DIR=${PETSC_DIR} clean-legacy
+@cd src/snes/tutorials >/dev/null; ${OMAKE_SELF} PETSC_ARCH=${PETSC_ARCH} PETSC_DIR=${PETSC_DIR} testex19
+@if [ "${HYPRE_LIB}" != "" ] && [ "${PETSC_WITH_BATCH}" = "" ] && [ "${PETSC_SCALAR}" = "real" ]; then \
cd src/snes/tutorials >/dev/null; ${OMAKE_SELF} PETSC_ARCH=${PETSC_ARCH} PETSC_DIR=${PETSC_DIR} DIFF=${PETSC_DIR}/lib/petsc/bin/petscdiff runex19_hypre; \
fi;
+@if [ "${CUDA_LIB}" != "" ] && [ "${PETSC_WITH_BATCH}" = "" ] && [ "${PETSC_SCALAR}" = "real" ]; then \
cd src/snes/tutorials >/dev/null; ${OMAKE_SELF} PETSC_ARCH=${PETSC_ARCH} PETSC_DIR=${PETSC_DIR} DIFF=${PETSC_DIR}/lib/petsc/bin/petscdiff runex19_cuda; \
fi;
+@if [ "${KOKKOS_LIB}" != "" ] && [ "${PETSC_WITH_BATCH}" = "" ] && [ "${PETSC_SCALAR}" = "real" ] && [ "${PETSC_PRECISION}" = "double" ]; then \
cd src/snes/tutorials >/dev/null; ${OMAKE_SELF} PETSC_ARCH=${PETSC_ARCH} PETSC_DIR=${PETSC_DIR} DIFF=${PETSC_DIR}/lib/petsc/bin/petscdiff runex3_kokkos; \
fi;
+@if [ "${MUMPS_LIB}" != "" ] && [ "${PETSC_WITH_BATCH}" = "" ]; then \
cd src/snes/tutorials >/dev/null; ${OMAKE_SELF} PETSC_ARCH=${PETSC_ARCH} PETSC_DIR=${PETSC_DIR} DIFF=${PETSC_DIR}/lib/petsc/bin/petscdiff runex19_fieldsplit_mumps; \
fi;
+@if [ "${SUPERLU_DIST_LIB}" != "" ] && [ "${PETSC_WITH_BATCH}" = "" ]; then \
cd src/snes/tutorials >/dev/null; ${OMAKE_SELF} PETSC_ARCH=${PETSC_ARCH} PETSC_DIR=${PETSC_DIR} DIFF=${PETSC_DIR}/lib/petsc/bin/petscdiff runex19_superlu_dist; \
fi;
+@if [ "${HDF5_LIB}" != "" ] && [ "${PETSC_WITH_BATCH}" = "" ]; then \
cd src/vec/vec/tests >/dev/null; \
${OMAKE_SELF} PETSC_ARCH=${PETSC_ARCH} PETSC_DIR=${PETSC_DIR} clean-legacy; \
${OMAKE_SELF} PETSC_ARCH=${PETSC_ARCH} PETSC_DIR=${PETSC_DIR} ex47.PETSc DIFF=${PETSC_DIR}/lib/petsc/bin/petscdiff runex47; \
${OMAKE_SELF} PETSC_ARCH=${PETSC_ARCH} PETSC_DIR=${PETSC_DIR} clean-legacy; \
fi;
+@if [ "${AMREX_LIB}" != "" ] && [ "${PETSC_WITH_BATCH}" = "" ]; then \
echo "Running testamres examples to verify correct installation";\
echo "Using PETSC_DIR=${PETSC_DIR} and PETSC_ARCH=${PETSC_ARCH}";\
cd src/ksp/ksp/tutorials/amrex >/dev/null; ${OMAKE_SELF} PETSC_ARCH=${PETSC_ARCH} PETSC_DIR=${PETSC_DIR} clean-legacy;\
${OMAKE_SELF} PETSC_ARCH=${PETSC_ARCH} PETSC_DIR=${PETSC_DIR} testamrex;\
fi;
+@if ( [ "${ML_LIB}" != "" ] || [ "${TRILINOS_LIB}" != "" ] ) && [ "${PETSC_WITH_BATCH}" = "" ]; then \
cd src/snes/tutorials >/dev/null; ${OMAKE_SELF} PETSC_ARCH=${PETSC_ARCH} PETSC_DIR=${PETSC_DIR} DIFF=${PETSC_DIR}/lib/petsc/bin/petscdiff runex19_ml; \
fi;
+@if [ "${SUITESPARSE_LIB}" != "" ] && [ "${PETSC_WITH_BATCH}" = "" ]; then \
cd src/snes/tutorials >/dev/null; ${OMAKE_SELF} PETSC_ARCH=${PETSC_ARCH} PETSC_DIR=${PETSC_DIR} DIFF=${PETSC_DIR}/lib/petsc/bin/petscdiff runex19_suitesparse; \
fi;
+@cd src/snes/tutorials >/dev/null; ${OMAKE_SELF} PETSC_ARCH=${PETSC_ARCH} PETSC_DIR=${PETSC_DIR} ex19.rm
+@if [ "${PETSC4PY}" = "yes" ]; then \
cd src/ksp/ksp/tutorials >/dev/null; \
${OMAKE_SELF} PETSC_ARCH=${PETSC_ARCH} PETSC_DIR=${PETSC_DIR} clean-legacy; \
${OMAKE_SELF} PETSC_ARCH=${PETSC_ARCH} PETSC_DIR=${PETSC_DIR} testex100; \
${OMAKE_SELF} PETSC_ARCH=${PETSC_ARCH} PETSC_DIR=${PETSC_DIR} clean-legacy; \
fi;
+@egrep "^#define PETSC_HAVE_FORTRAN 1" ${PETSCCONF_H} | tee .ftn.log > /dev/null; \
if test -s .ftn.log; then \
cd src/snes/tutorials >/dev/null; ${OMAKE_SELF} PETSC_ARCH=${PETSC_ARCH} PETSC_DIR=${PETSC_DIR} testex5f; \
fi; ${RM} .ftn.log;
+@egrep "^#define PETSC_HAVE_MATLAB_ENGINE 1" ${PETSCCONF_H} | tee .ftn.log > /dev/null; \
if test -s .ftn.log; then \
cd src/vec/vec/tutorials >/dev/null; ${OMAKE_SELF} PETSC_ARCH=${PETSC_ARCH} PETSC_DIR=${PETSC_DIR} testex31; \
fi; ${RM} .ftn.log;
+@cd src/snes/tutorials >/dev/null; ${OMAKE_SELF} PETSC_ARCH=${PETSC_ARCH} PETSC_DIR=${PETSC_DIR} clean-legacy
-@echo "Completed test examples"
checkx_build:
-@echo "Running graphics check example to verify correct X11 installation"
-@echo "Using PETSC_DIR=${PETSC_DIR} and PETSC_ARCH=${PETSC_ARCH}"
@cd src/snes/tutorials; ${OMAKE_SELF} PETSC_ARCH=${PETSC_ARCH} PETSC_DIR=${PETSC_DIR} clean-legacy
@cd src/snes/tutorials; ${OMAKE_SELF} PETSC_ARCH=${PETSC_ARCH} PETSC_DIR=${PETSC_DIR} testxex19
@cd src/snes/tutorials; ${OMAKE_SELF} PETSC_ARCH=${PETSC_ARCH} PETSC_DIR=${PETSC_DIR} clean-legacy
-@echo "Completed graphics check example"
check_usermakefile:
-@echo "Testing compile with user makefile"
-@echo "Using PETSC_DIR=${PETSC_DIR} and PETSC_ARCH=${PETSC_ARCH}"
@cd src/snes/tutorials; ${OMAKE} PETSC_ARCH=${PETSC_ARCH} PETSC_DIR=${PETSC_DIR} -f ${PETSC_DIR}/share/petsc/Makefile.user ex19
@egrep "^#define PETSC_HAVE_FORTRAN 1" ${PETSCCONF_H} | tee .ftn.log > /dev/null; \
if test -s .ftn.log; then \
cd src/snes/tutorials; ${OMAKE} PETSC_ARCH=${PETSC_ARCH} PETSC_DIR=${PETSC_DIR} -f ${PETSC_DIR}/share/petsc/Makefile.user ex5f; \
fi; ${RM} .ftn.log;
@cd src/snes/tutorials; ${OMAKE_SELF} PETSC_ARCH=${PETSC_ARCH} PETSC_DIR=${PETSC_DIR} clean-legacy
-@echo "Completed compile with user makefile"
# Compare ABI/API of two versions of PETSc library with the old one defined by PETSC_{DIR,ARCH}_ABI_OLD
abitest:
@if [ "${PETSC_DIR_ABI_OLD}" = "" ] || [ "${PETSC_ARCH_ABI_OLD}" = "" ]; \
then printf "You must set environment variables PETSC_DIR_ABI_OLD and PETSC_ARCH_ABI_OLD to run abitest\n"; \
exit 1; \
fi;
-@echo "Comparing ABI/API of the following two PETSc versions (you must have already configured and built them using GCC and with -g):"
-@echo "========================================================================================="
-@echo " Old: PETSC_DIR_ABI_OLD = ${PETSC_DIR_ABI_OLD}"
-@echo " PETSC_ARCH_ABI_OLD = ${PETSC_ARCH_ABI_OLD}"
-@pushd ${PETSC_DIR_ABI_OLD} >> /dev/null ; echo " Branch = "`git rev-parse --abbrev-ref HEAD`
-@echo " New: PETSC_DIR = ${PETSC_DIR}"
-@echo " PETSC_ARCH = ${PETSC_ARCH}"
-@echo " Branch = "`git rev-parse --abbrev-ref HEAD`
-@echo "========================================================================================="
-@$(PYTHON) ${PETSC_DIR}/lib/petsc/bin/maint/abicheck.py -old_dir ${PETSC_DIR_ABI_OLD} -old_arch ${PETSC_ARCH_ABI_OLD} -new_dir ${PETSC_DIR} -new_arch ${PETSC_ARCH} -report_format html
# Compare ABI/API of current PETSC_ARCH/PETSC_DIR with a previous branch
abitestcomplete:
-@if [[ -f "${PETSC_DIR}/${PETSC_ARCH}/lib/petsc/conf/configure.log" ]]; then \
OPTIONS=`grep -h -m 1 "Configure Options: " ${PETSC_DIR}/${PETSC_ARCH}/lib/petsc/conf/configure.log | sed "s!Configure Options: --configModules=PETSc.Configure --optionsModule=config.compilerOptions!!g"` ;\
echo $${OPTIONS} ;\
fi ; \
if [[ "${PETSC_DIR_ABI_OLD}" != "" ]]; then \
PETSC_DIR_OLD=${PETSC_DIR_ABI_OLD}; \
else \
PETSC_DIR_OLD=${PETSC_DIR}/../petsc-abi; \
fi ; \
echo "=================================================================================================" ;\
echo "Doing ABI/API comparison between" ${branch} " and " `git rev-parse --abbrev-ref HEAD` "using " $${OPTIONS} ;\
echo "=================================================================================================" ;\
if [[ ! -d $${PETSC_DIR_OLD} ]]; then \
git clone ${PETSC_DIR} $${PETSC_DIR_OLD} ; \
else \
cd $${PETSC_DIR_OLD} ; \
git pull ; \
fi ; \
cd $${PETSC_DIR_OLD} ; \
git checkout ${branch} ; \
PETSC_DIR=`pwd` PETSC_ARCH=arch-branch-`git rev-parse ${branch}` ./configure $${OPTIONS} ; \
PETSC_DIR=`pwd` PETSC_ARCH=arch-branch-`git rev-parse ${branch}` make all test ; \
cd ${PETSC_DIR} ; \
./configure $${OPTIONS}; \
make all test ; \
PETSC_DIR_ABI_OLD=$${PETSC_DIR_OLD} PETSC_ARCH_ABI_OLD=arch-branch-`git rev-parse ${branch}` make abitest
# Deletes PETSc libraries
deletelibs:
-${RM} -rf ${PETSC_LIB_DIR}/libpetsc*.*
deletemods:
-${RM} -f ${PETSC_DIR}/${PETSC_ARCH}/include/petsc*.mod
allclean:
-@${OMAKE} -f gmakefile clean
clean:: allclean
distclean: chk_petscdir
@if [ -f ${PETSC_DIR}/${PETSC_ARCH}/lib/petsc/conf/reconfigure-${PETSC_ARCH}.py ]; then \
echo "*** Preserving ${PETSC_DIR}/${PETSC_ARCH}/lib/petsc/conf/reconfigure-${PETSC_ARCH}.py in ${PETSC_DIR} ***"; \
mv -f ${PETSC_DIR}/${PETSC_ARCH}/lib/petsc/conf/reconfigure-${PETSC_ARCH}.py ${PETSC_DIR}/; fi
@echo "*** Deleting all build files in ${PETSC_DIR}/${PETSC_ARCH} ***"
-${RM} -rf ${PETSC_DIR}/${PETSC_ARCH}/
#
reconfigure:
@unset MAKEFLAGS && ${PYTHON} ${PETSC_ARCH}/lib/petsc/conf/reconfigure-${PETSC_ARCH}.py
#
install:
@${PYTHON} ./config/install.py -destDir=${DESTDIR}
+${OMAKE_SELF} PETSC_ARCH=${PETSC_ARCH} PETSC_DIR=${PETSC_DIR} mpi4py-install petsc4py-install libmesh-install mfem-install slepc-install hpddm-install amrex-install bamg-install
mpistreams:
+@cd src/benchmarks/streams; ${OMAKE_SELF} PATH="${PETSC_DIR}/${PETSC_ARCH}/lib:${PATH}" PETSC_DIR=${PETSC_DIR} PETSC_ARCH=${PETSC_ARCH} mpistreams
mpistream:
+@cd src/benchmarks/streams; ${OMAKE_SELF} PATH="${PETSC_DIR}/${PETSC_ARCH}/lib:${PATH}" PETSC_DIR=${PETSC_DIR} PETSC_ARCH=${PETSC_ARCH} mpistream
openmpstreams:
+@cd src/benchmarks/streams; ${OMAKE_SELF} PATH="${PETSC_DIR}/${PETSC_ARCH}/lib:${PATH}" PETSC_DIR=${PETSC_DIR} PETSC_ARCH=${PETSC_ARCH} openmpstreams
openmpstream:
+@cd src/benchmarks/streams; ${OMAKE_SELF} PATH="${PETSC_DIR}/${PETSC_ARCH}/lib:${PATH}" PETSC_DIR=${PETSC_DIR} PETSC_ARCH=${PETSC_ARCH} openmpstream
# for legacy reasons
stream: mpistream
streams: mpistreams
# ------------------------------------------------------------------
#
# All remaining actions are intended for PETSc developers only.
# PETSc users should not generally need to use these commands.
#
# See the users manual for how the tags files may be used from Emacs and Vi/Vim
#
alletags:
-@${PYTHON} lib/petsc/bin/maint/generateetags.py
-@find config -type f -name "*.py" |grep -v SCCS | xargs etags -o TAGS_PYTHON
# obtain gtags from https://www.gnu.org/software/global/
allgtags:
-@find ${PETSC_DIR}/include ${PETSC_DIR}/src -regex '\(.*makefile\|.*\.\(cc\|hh\|cpp\|cxx\|C\|hpp\|c\|h\|cu\|m\)$$\)' | grep -v ftn-auto | gtags -f -
allfortranstubs:
-@${RM} -rf ${PETSC_ARCH}/include/petsc/finclude/ftn-auto/*-tmpdir
@${PYTHON} lib/petsc/bin/maint/generatefortranstubs.py ${BFORT} ${VERBOSE}
-@${PYTHON} lib/petsc/bin/maint/generatefortranstubs.py -merge ${VERBOSE}
-@${RM} -rf ${PETSC_ARCH}/include/petsc/finclude/ftn-auto/*-tmpdir
deletefortranstubs:
-@find . -type d -name ftn-auto | xargs rm -rf
# Builds all the documentation - should be done every night
alldoc: allcite allpdf sphinx-docs-all alldoc1 alldoc2 docsetdate
# Build just citations
allcite: chk_loc deletemanualpages
-${PYTHON} lib/petsc/bin/maint/countpetsccits.py
-${OMAKE_SELF} ACTION=manualpages_buildcite tree_basic LOC=${LOC}
-@sed -e s%man+../%man+manualpages/% ${LOC}/docs/manualpages/manualpages.cit > ${LOC}/docs/manualpages/htmlmap
-@cat ${PETSC_DIR}/src/docs/mpi.www.index >> ${LOC}/docs/manualpages/htmlmap
# Build just TAO PDF manual + prerequisites
allpdf: chk_loc allcite
-cd src/docs/tao_tex/manual; ${OMAKE_SELF} manual.pdf LOC=${LOC}
# Build just manual pages + prerequisites
allmanpages: chk_loc allcite
-${OMAKE_SELF} ACTION=manualpages tree_basic LOC=${LOC}
# Build just manual examples + prerequisites
allmanexamples: chk_loc allmanpages
-${OMAKE_SELF} ACTION=manexamples tree_basic LOC=${LOC}
# Build everything that goes into 'doc' dir except html sources
alldoc1: chk_loc chk_concepts_dir allcite allmanpages allmanexamples
-${OMAKE_SELF} manimplementations LOC=${LOC}
-${PYTHON} lib/petsc/bin/maint/wwwindex.py ${PETSC_DIR} ${LOC}
-${OMAKE_SELF} ACTION=getexlist tree_basic LOC=${LOC}
-${OMAKE_SELF} ACTION=exampleconcepts tree_basic LOC=${LOC}
-${PYTHON} lib/petsc/bin/maint/helpindex.py ${PETSC_DIR} ${LOC}
# Builds .html versions of the source
# html overwrites some stuff created by update-docs - hence this is done later.
alldoc2: chk_loc allcite
-${OMAKE_SELF} ACTION=html PETSC_DIR=${PETSC_DIR} alltree LOC=${LOC}
-${PYTHON} lib/petsc/bin/maint/update-docs.py ${PETSC_DIR} ${LOC}
#
# Makes links for all manual pages in $LOC/docs/manualpages/all
allman:
@cd ${LOC}/docs/manualpages; rm -rf all ; mkdir all ; find * -type d -wholename all -prune -o -name index.html -prune -o -type f -name \*.html -exec ln -s -f ../{} all \;
DOCSETDATE_PRUNE_LIST=-o -type f -wholename share/petsc/saws/linearsolveroptions.html -prune -o -type f -wholename tutorials/HandsOnExercise.html -prune -o -type f -wholename tutorials/TAOHandsOnExercise.html -prune
# modify all generated html files and add in version number, date, canonical URL info.
docsetdate: chk_petscdir
@echo "Updating generated html files with petsc version, date, canonical URL info";\
version_release=`grep '^#define PETSC_VERSION_RELEASE ' include/petscversion.h |tr -s ' ' | cut -d ' ' -f 3`; \
version_major=`grep '^#define PETSC_VERSION_MAJOR ' include/petscversion.h |tr -s ' ' | cut -d ' ' -f 3`; \
version_minor=`grep '^#define PETSC_VERSION_MINOR ' include/petscversion.h |tr -s ' ' | cut -d ' ' -f 3`; \
version_subminor=`grep '^#define PETSC_VERSION_SUBMINOR ' include/petscversion.h |tr -s ' ' | cut -d ' ' -f 3`; \
if [ $${version_release} = 0 ]; then \
petscversion=petsc-master; \
export petscversion; \
elif [ $${version_release} = 1 ]; then \
petscversion=petsc-$${version_major}.$${version_minor}.$${version_subminor}; \
export petscversion; \
else \
echo "Unknown PETSC_VERSION_RELEASE: $${version_release}"; \
exit; \
fi; \
datestr=`git log -1 --pretty=format:%ci | cut -d ' ' -f 1`; \
export datestr; \
gitver=`git describe --match "v*"`; \
export gitver; \
find * -type d -wholename src/docs/website \
-prune -o -type d -wholename src/benchmarks/results \
-prune -o -type d -wholename config/BuildSystem/docs/website \
-prune -o -type d -wholename include/web \
-prune -o -type d -wholename 'arch-*' \
-prune -o -type d -wholename lib/petsc/bin/maint \
-prune -o -type d -wholename externalpackages \
-prune ${DOCSETDATE_PRUNE_LIST} -o -type f -name \*.html \
-exec perl -pi -e 's^(<body.*>)^$$1\n <div id=\"version\" align=right><b>$$ENV{petscversion} $$ENV{datestr}</b></div>\n <div id="bugreport" align=right><a href="mailto:petsc-maint\@mcs.anl.gov?subject=Typo or Error in Documentation &body=Please describe the typo or error in the documentation: $$ENV{petscversion} $$ENV{gitver} {} "><small>Report Typos and Errors</small></a></div>^i' {} \; \
-exec perl -pi -e 's^(<head>)^$$1 <link rel="canonical" href="http://www.mcs.anl.gov/petsc/petsc-current/{}" />^i' {} \; ; \
echo "Done fixing version number, date, canonical URL info"
# Use Sphinx to build some documentation. This uses Python's venv, which should
# behave similarly to what happens on e.g. ReadTheDocs. You may prefer to use
# your own Python environment and directly build the Sphinx docs by using
# the makefile in ${PETSC_SPHINX_ROOT}, paying attention to the requirements.txt
# there.
PETSC_SPHINX_ROOT=src/docs/sphinx_docs
PETSC_SPHINX_ENV=${PETSC_ARCH}/sphinx_docs_env
PETSC_SPHINX_DEST=docs/sphinx_docs
sphinx-docs-all: sphinx-docs-manual sphinx-docs-html
sphinx-docs-html: chk_loc allcite sphinx-docs-env
@. ${PETSC_SPHINX_ENV}/bin/activate && ${OMAKE} -C ${PETSC_SPHINX_ROOT} \
BUILDDIR=${LOC}/${PETSC_SPHINX_DEST} html
sphinx-docs-manual: chk_loc sphinx-docs-env
@. ${PETSC_SPHINX_ENV}/bin/activate && ${OMAKE} -C ${PETSC_SPHINX_ROOT} \
BUILDDIR=${LOC}/${PETSC_SPHINX_DEST} latexpdf
@mv ${LOC}/${PETSC_SPHINX_DEST}/latex/manual.pdf ${LOC}/docs/manual.pdf
@${RM} -rf ${LOC}/${PETSC_SPHINX_DEST}/latex
sphinx-docs-env: sphinx-docs-check-python sphinx-docs-check-rsvg-convert
@if [ ! -d "${PETSC_SPHINX_ENV}" ]; then \
${PYTHON} -m venv ${PETSC_SPHINX_ENV}; \
. ${PETSC_SPHINX_ENV}/bin/activate; \
pip install -r ${PETSC_SPHINX_ROOT}/requirements.txt; \
fi
sphinx-docs-check-rsvg-convert:
@if ! command -v rsvg-convert 2>&1 > /dev/null; then \
printf "rsvg-convert is required for the sphinxcontrib-svg2pdfconverter extension for the Sphinx docs\n"; \
false; \
fi
sphinx-docs-check-python:
@${PYTHON} -c 'import sys; sys.exit(sys.version_info[:2] < (3,3))' || \
(printf 'Working Python 3.3 or later is required to build the Sphinx docs in a virtual environment\nTry e.g.\n make ... PYTHON=python3\n' && false)
sphinx-docs-clean: chk_loc
${RM} -rf ${PETSC_SPHINX_ENV}
${RM} -rf ${LOC}/${PETSC_SPHINX_DEST}
alldocclean: deletemanualpages allcleanhtml sphinx-docs-clean
# Deletes man pages (HTML version)
deletemanualpages: chk_loc
-@if [ -d ${LOC} -a -d ${LOC}/docs/manualpages ]; then \
find ${LOC}/docs/manualpages -type f -name "*.html" -exec ${RM} {} \; ;\
${RM} ${LOC}/docs/exampleconcepts ;\
${RM} ${LOC}/docs/manualpages/manualpages.cit ;\
${PYTHON} lib/petsc/bin/maint/update-docs.py ${PETSC_DIR} ${LOC} clean;\
fi
allcleanhtml:
-${OMAKE_SELF} ACTION=cleanhtml PETSC_DIR=${PETSC_DIR} alltree
chk_concepts_dir: chk_loc
@if [ ! -d "${LOC}/docs/manualpages/concepts" ]; then \
echo Making directory ${LOC}/docs/manualpages/concepts for library; ${MKDIR} ${LOC}/docs/manualpages/concepts; fi
# Builds simple html versions of the source without links into the $PETSC_ARCH/obj directory, used by make mergecov
srchtml:
-${OMAKE_SELF} ACTION=simplehtml PETSC_DIR=${PETSC_DIR} alltree_src
###########################################################
# targets to build distribution and update docs
###########################################################
# Creates ${HOME}/petsc.tar.gz [and petsc-lite.tar.gz]
dist:
${PETSC_DIR}/lib/petsc/bin/maint/builddist ${PETSC_DIR} master
# This target works only if you can do 'ssh petsc@login.mcs.anl.gov'
# also copy the file over to ftp site.
web-snapshot:
@if [ ! -f "${HOME}/petsc-master.tar.gz" ]; then \
echo "~/petsc-master.tar.gz missing! cannot update petsc-master snapshot on mcs-web-site"; \
else \
echo "updating petsc-master snapshot on mcs-web-site"; \
tmpdir=`mktemp -d -t petsc-doc.XXXXXXXX`; \
cd $${tmpdir}; tar -xzf ${HOME}/petsc-master.tar.gz; \
/usr/bin/rsync -e ssh -az --delete $${tmpdir}/petsc-master/ \
petsc@login.mcs.anl.gov:/mcs/web/research/projects/petsc/petsc-master ;\
/bin/cp -f /home/petsc/petsc-master.tar.gz /mcs/ftp/pub/petsc/petsc-master.tar.gz;\
${RM} -rf $${tmpdir} ;\
fi
# build the tarfile - and then update petsc-master snapshot on mcs-web-site
update-web-snapshot: dist web-snapshot
# This target updates website main pages
update-web:
@cd ${PETSC_DIR}/src/docs; make PETSC_DIR=${PETSC_DIR} PETSC_ARCH=${PETSC_ARCH} bib2html; \
/usr/bin/rsync -az -C --exclude=documentation/index.html \
--exclude=documentation/installation.html --exclude=download/index.html \
${PETSC_DIR}/src/docs/website/ petsc@login.mcs.anl.gov:/mcs/web/research/projects/petsc
@cd ${PETSC_DIR}/src/docs/tex; /usr/bin/rsync -az petscapp.bib petsc.bib petsc@login.mcs.anl.gov:/mcs/web/research/projects/petsc/publications
###########################################################
#
# See script for details
#
gcov:
@$(PYTHON) ${PETSC_DIR}/lib/petsc/bin/maint/gcov.py --run_gcov --petsc_arch ${PETSC_ARCH}
mergegcov:
@$(PYTHON) ${PETSC_DIR}/lib/petsc/bin/maint/gcov.py --merge_gcov --petsc_arch ${PETSC_ARCH} --merge_branch `lib/petsc/bin/maint/check-merge-branch.sh`
########################
#
# Create the include dependency graph (requires graphviz to be available)
#
includegraph:
-@${PETSC_DIR}/src/contrib/style/include-graph.sh includegraph.pdf
-@echo Include dependency graph written to includegraph.pdf
#
# -------------------------------------------------------------------------------
#
# Some macros to check if the fortran interface is up-to-date.
#
countfortranfunctions:
-@cd ${PETSC_DIR}/src/fortran; egrep '^void' custom/*.c auto/*.c | \
cut -d'(' -f1 | tr -s ' ' | cut -d' ' -f2 | uniq | egrep -v "(^$$|Petsc)" | \
sed "s/_$$//" | sort > /tmp/countfortranfunctions
countcfunctions:
-@grep PETSC_EXTERN ${PETSC_DIR}/include/*.h | grep "(" | tr -s ' ' | \
cut -d'(' -f1 | cut -d' ' -f3 | grep -v "\*" | tr -s '\012' | \
tr 'A-Z' 'a-z' | sort | uniq > /tmp/countcfunctions
difffortranfunctions: countfortranfunctions countcfunctions
-@echo -------------- Functions missing in the fortran interface ---------------------
-@${DIFF} /tmp/countcfunctions /tmp/countfortranfunctions | grep "^<" | cut -d' ' -f2
-@echo ----------------- Functions missing in the C interface ------------------------
-@${DIFF} /tmp/countcfunctions /tmp/countfortranfunctions | grep "^>" | cut -d' ' -f2
-@${RM} /tmp/countcfunctions /tmp/countfortranfunctions
checkbadfortranstubs:
-@echo "========================================="
-@echo "Functions with MPI_Comm as an Argument"
-@echo "========================================="
-@cd ${PETSC_DIR}/src/fortran/auto; grep '^void' *.c | grep 'MPI_Comm' | \
tr -s ' ' | tr -s ':' ' ' |cut -d'(' -f1 | cut -d' ' -f1,3
-@echo "========================================="
-@echo "Functions with a String as an Argument"
-@echo "========================================="
-@cd ${PETSC_DIR}/src/fortran/auto; grep '^void' *.c | grep 'char \*' | \
tr -s ' ' | tr -s ':' ' ' |cut -d'(' -f1 | cut -d' ' -f1,3
-@echo "========================================="
-@echo "Functions with Pointers to PETSc Objects as Argument"
-@echo "========================================="
-@cd ${PETSC_DIR}/src/fortran/auto; \
_p_OBJ=`grep _p_ ${PETSC_DIR}/include/*.h | tr -s ' ' | \
cut -d' ' -f 3 | tr -s '\012' | grep -v '{' | cut -d'*' -f1 | \
sed "s/_p_//g" | tr -s '\012 ' ' *|' ` ; \
for OBJ in $$_p_OBJ; do \
grep "$$OBJ \*" *.c | tr -s ' ' | tr -s ':' ' ' | \
cut -d'(' -f1 | cut -d' ' -f1,3; \
done
checkpackagetests:
-@echo "Missing package tests"
-@cat config/examples/*.py > configexamples; pushd config/BuildSystem/config/packages/; packages=`ls *.py | sed "s/\\.py//g"`;popd; for i in $${packages}; do j=`echo $${i} | tr '[:upper:]' '[:lower:]'`; printf $${j} ; egrep "(with-$${j}|download-$${j})" configexamples | grep -v "=0" | wc -l ; done
-@echo "Missing download package tests"
-@cat config/examples/*.py > configexamples; pushd config/BuildSystem/config/packages/; packages=`grep -l "download " *.py | sed "s/\\.py//g"`;popd; for i in $${packages}; do j=`echo $${i} | tr '[:upper:]' '[:lower:]'`; printf $${j} ; egrep "(download-$${j})" configexamples | grep -v "=0" | wc -l ; done
.PHONY: info info_h all deletelibs allclean update \
alletags etags etags_complete etags_noexamples etags_makefiles etags_examples etags_fexamples alldoc allmanualpages \
allhtml allcleanhtml countfortranfunctions \
start_configure configure_petsc configure_clean matlabbin install