All Classes

  • AbstractDepictor
  • AbstractDepictor.DepictorDot
  • AbstractDepictor.DepictorLine
  • AbstractDescriptorHandlerFP
  • AbstractDescriptorHandlerLongFP
  • AbstractDrawingObject
  • AbstractExtendedDepictor
  • AbstractForceField
  • AbstractParser
  • AbstractScoringEngine
  • AcceptorPoint
  • Action
  • AddRingAction
  • AMemorizedObject
  • AminoAcidLabeled
  • AminoAcidsLabeledContainer
  • Angle
  • Angle
  • Angle
  • AngleBend
  • AngleConstraint
  • AromaticityResolver
  • AromRingPoint
  • ArrayUtils
  • ArrayUtilsCalc
  • Arrow
  • ArrowAction
  • Atom
  • Atom
  • AtomAssembler
  • AtomComparator
  • AtomFunctionAnalyzer
  • AtomHighlightAction
  • AtomicFloat
  • AtomicGaussian
  • AtomIndexLinkerId
  • AtomMapAction
  • AtomRecord
  • AtomTypeCalculator
  • AtomTypeList
  • AtomTypeMap
  • AutoMapper
  • AxialStereoRule
  • BadAtomTypeException
  • BadRingAromException
  • BinaryDecoder
  • BitArray128
  • BitArray128Factory
  • BitUtils
  • Bndk
  • BOMSkipper
  • Bond
  • Bond
  • BondAngleSet
  • BondBaseAction
  • BondConstraint
  • BondHighlightAction
  • BondLengthSet
  • BondRotationHelper
  • BondsCalculator
  • BondStretch
  • BondVector2IdCode
  • BurtleHasher
  • BurtleHasherABC
  • ByteArray
  • ByteArrayComparator
  • ByteVec
  • Canonizer
  • CanonizerBaseValue
  • CanonizerMesoHelper
  • CanonizerUtil
  • CanonizerUtil.IDCODE_TYPE
  • CanonizerUtil.StrongHasher
  • CDXConstants
  • ChangeAtomAction
  • ChangeAtomPropertiesAction
  • ChangeChargeAction
  • Charge
  • Charge
  • ChargePoint
  • ChemDrawCDX
  • ChemistryDataFormats
  • ChemistryFlavors
  • ChemistryHelper
  • ChemPLP
  • ClassificationData
  • CleanAction
  • ClearAction
  • ClipboardHandler
  • ClipboardHelper
  • CLogPPredictor
  • ClusterNode
  • ColorHelper
  • ColorUtils
  • CombinationGenerator
  • CommandAction
  • CommandLineParser
  • CommonSubGraphHelper
  • CompleteGraphMatcher
  • CompoundCollectionListener
  • CompoundCollectionModel
  • CompoundCollectionPane
  • CompoundFileFilter
  • CompoundFileHelper
  • CompoundFileParser
  • CompoundTableConstants
  • ConformationRule
  • ConformationSelfOrganizer
  • Conformer
  • ConformerGenerator
  • ConformerSet
  • ConformerSetGenerator
  • Constants
  • ConstantsAminoAcidsLabeled
  • ConstantsDWAR
  • ConstantsFlexophore
  • ConstantsFlexophoreGenerator
  • ConstantsFlexophoreHardPPPoints
  • ConstantsHistogram
  • ContainerBitArray
  • ContainerFragBondsSolutions
  • ContainerListWithIntVec
  • ContainerMemory
  • CoordinateInventor
  • Coordinates
  • CopyAction
  • CorrelationCalculator
  • CovRad
  • CreatorMolDistHistViz
  • Csv
  • CursorHelper
  • CutAction
  • DataProcessor
  • DateAnalysis
  • Def
  • DefaultCompoundCollectionModel
  • DefaultCompoundCollectionModel.IDCode
  • DefaultCompoundCollectionModel.IDCodeWithName
  • DefaultCompoundCollectionModel.Molecule
  • DefaultCompoundCollectionModel.Native
  • Delegator
  • DeleteAction
  • Depictor
  • Depictor2D
  • DepictorTransformation
  • DescriptorConstants
  • DescriptorEncoder
  • DescriptorHandler
  • DescriptorHandlerFactory
  • DescriptorHandlerFFP512
  • DescriptorHandlerFlexophore
  • DescriptorHandlerFunctionalGroups
  • DescriptorHandlerHashedCFp
  • DescriptorHandlerLongCFP
  • DescriptorHandlerLongFFP512
  • DescriptorHandlerLongPFP512
  • DescriptorHandlerPFP512
  • DescriptorHandlerPTree
  • DescriptorHandlerReactionFP
  • DescriptorHandlerShape
  • DescriptorHandlerShapeOneConf
  • DescriptorHandlerSkeletonSpheres
  • DescriptorHandlerStandard2DFactory
  • DescriptorHandlerStandardFactory
  • DescriptorHelper
  • DescriptorInfo
  • Dfsb
  • DialogResult
  • DiastereoIDTest
  • DiastereotopicAtomID
  • DistanceRule
  • DistHist
  • DistHistEncoder
  • DistHistHelper
  • DistHistHelper.RangeStatistics
  • DiversitySelector
  • DockingEngine
  • DockingEngine.DockingResult
  • DockingEngine.ScoringFunction
  • DockingEngine.StartPosition
  • DockingFailedException
  • DockingUtils
  • DonorPoint
  • DoubleArray
  • DoubleFormat
  • DoubleVec
  • DownBondAction
  • DragGlassPane
  • DrawAction
  • DrawAreaEvent
  • DrawAreaListener
  • DrawConfig
  • DrawingObject
  • DrawingObjectFactory
  • DrawingObjectList
  • DruglikenessPredictor
  • DrugScoreCalculator
  • DWARFileCreator
  • DWARFileParser
  • Electrostatic
  • Element
  • EmpiricalLigandStrain
  • EncodeFunctions
  • EncoderFloatingPointNumbers
  • EncoderIntegerNumbers
  • EnergyTerm
  • ErrorHashMap
  • Evaluable
  • EvaluableFlexibleOverlap
  • EvaluableOverlap
  • ExceptionConformationGenerationFailed
  • ExhaustiveFragmentGeneratorAtoms
  • ExhaustiveFragmentGeneratorBonds
  • ExhaustiveFragmentGeneratorParallizer
  • ExhaustiveFragmentsStatistics
  • ExhaustiveMCSGeneratorParallel
  • ExitVectorPoint
  • ExtendedDepictor
  • ExtendedMolecule
  • ExtendedMoleculeFunctions
  • FactorySolution
  • FastSpline
  • FastSpline.Polynome
  • FeatureCalculator
  • FileHelper
  • FingerPrintGenerator
  • FlexibleShapeAlignment
  • FlexophoreCreateFunctions
  • FlexophorePoint
  • ForceField
  • ForceFieldChangeListener
  • ForceFieldMMFF94
  • Formatter
  • Formatter.LocaleFormat
  • FormulaParser
  • FractalDimensionMolecule
  • FractalDimensionMoleculeMain
  • Fragment
  • Fragment3D
  • FragmentAssociation
  • FragmentDefinedByBondsHasher
  • FragmentDefinedByBondsIdCode
  • Fragmenter3D
  • FunctionalGroupClassifier
  • Gaussian3D
  • GeometryCalculator
  • GeometryCalculator
  • GeomFactory
  • Graph
  • GraphicsContextImpl
  • HashSetInt
  • HBTerm
  • HerschbachLaurie
  • HetNameParser
  • HetSynonymParser
  • HiDPIHelper
  • HiDPIIcon
  • HiDPIIconButton
  • HiDPIToggleButton
  • HiDPIUtil
  • Histogram
  • HistogramMatchCalculator
  • HoseCodeCreator
  • HungarianAlgorithm
  • HydrogenHandler
  • IArrow
  • IAtomPropertiesDialog
  • IAtomQueryFeaturesDialog
  • IBitArray
  • IBitArrayFactory
  • IBondQueryFeaturesDialog
  • IChangeListener
  • IClipboardHandler
  • IColor
  • ICompleteGraph
  • ICursor
  • IDCodeCoord
  • IDCodeParser
  • IDCodeParserWithoutCoordinateInvention
  • IdentifiedObject
  • IDepictor
  • IDialog
  • IdoScore
  • IDrawContext
  • IDrawingObject
  • IFactory
  • IIdentifiedObject
  • IKeyCode
  • IKeyEvent
  • ImageClipboardHandler
  • ImageClipboardHandler.ImageSelection
  • ImageProvider
  • IMolDistHist
  • IMoleculeView
  • IMouseEvent
  • IncrementTable
  • IndexCoordinates
  • IndexHash
  • InputObjectFracDimCalc
  • IntArray
  • IntArrayComparator
  • IntegerDouble
  • InteractionAtomTypeCalculator
  • InteractionAtomTypeCalculator.AtomFlagCount
  • InteractionAtomTypeCalculator.AtomPropertyMask
  • InteractionAtomTypeCalculator.AtomPropertyShift
  • InteractionAtomTypeCalculator.FunctionalGroup
  • InteractionDistanceStatistics
  • InteractionSimilarityTable
  • InteractionSimilarityTable.InteractionDescriptor
  • InteractionTerm
  • InteractionTypeMap
  • IntQueue
  • IntQueue
  • IntVec
  • INumericalDataColumn
  • InventorAngle
  • InventorChain
  • InventorCharge
  • InventorDefaultTemplateList
  • InventorFragment
  • InventorTemplate
  • IO
  • IObjectiveCompleteGraph
  • IonizableGroupDetector
  • IonizableGroupDetector2D
  • IPharmacophorePoint
  • IPharmacophorePoint.Functionality
  • IPipeline
  • IPolygon
  • IPPNodeSimilarity
  • IReactionArrow
  • IReactionMapper
  • IRectangle2D
  • ISimilarityCalculator
  • ISimilarityHandlerFactory
  • IsomericSmilesCreator
  • IsotopeHelper
  • IStructureNameResolver
  • IValidationListener
  • JAtomLabelDialog
  • JAtomQueryFeatureDialog
  • JBondQueryFeatureDialog
  • JBrowseButtons
  • JChemistryView
  • JDrawArea
  • JDrawDialog
  • JDrawPanel
  • JDrawToolbar
  • JEditableChemistryView
  • JEditableStructureView
  • JFileChooserOverwrite
  • JFXCanvasDepictor
  • JMessageBar
  • JStructureView
  • JTextDrawingObjectDialog
  • KabschAlignment
  • LigandPose
  • LinearRegression
  • Linker
  • ListInteger
  • ListWithIntVec
  • ListWithIntVecIdCode
  • LittleEndianDataInputStream
  • LittleEndianDataOutputStream
  • Logarithm
  • LookAndFeelHelper
  • LUDecomposition
  • MarkushStructure
  • MathHelper
  • Matrix
  • MatrixBasedHistogram
  • MCS
  • MCSFast
  • MCSFunctions
  • MCSReactionMapper
  • MDHIndexTables
  • MedianStatisticFunctions
  • MetaFile
  • MetalTerm
  • MetropolisMonteCarloHelper
  • MinimumSpanningTree
  • MMFFMolecule
  • Model
  • Model.AtomHighlightCallback
  • Model.BondHighlightCallback
  • ModelExhaustiveStatistics
  • ModelMedianDouble
  • ModelMedianFloat
  • ModelMedianInteger
  • ModelMedianLong
  • ModelParser
  • ModelSampleFragments
  • Mol2FileParser
  • MolDistHist
  • MolDistHistEncoder
  • MolDistHistViz
  • MolDistHistVizEncoder
  • MolDistHistVizFrag
  • MolecularComplexityCalculator
  • MolecularFormula
  • MolecularVolume
  • Molecule
  • Molecule3D
  • Molecule3DFunctions
  • MoleculeAutoMapper
  • MoleculeDataFormats
  • MoleculeDragAdapter
  • MoleculeDropAdapter
  • MoleculeFilter
  • MoleculeGrid
  • MoleculeNeutralizer
  • MoleculeStandardizer
  • MoleculeTransferable
  • MoleculeView
  • MoleculeViewSkin
  • MolfileCreator
  • MolfileParser
  • MolfileV3Creator
  • MultCoordFragIndex
  • MultipleNonOverlapSolution
  • Mutation
  • MutationBiasProvider
  • Mutator
  • NamedSubstituents
  • NativeClipboardAccessor
  • NewBondAction
  • NewChainAction
  • ObjectiveExhaustiveStatistics
  • ObjectiveFlexophoreHardMatchUncovered
  • ODEFileParser
  • OptimizerLBFGS
  • OutOfPlane
  • OutOfPlane
  • ParameterizedStringList
  • PasteAction
  • PDBCoordEntryFile
  • PDBFileParser
  • PeriodicTable
  • PeriodicTable
  • PharmacophoreCalculator
  • PharmacophoreNode
  • PharmacophorePointFactory
  • PharmacophoreTree
  • PharmacophoreTree.BiGramInt
  • PharmacophoreTreeGenerator
  • PheSAAlignment
  • PheSAAlignment.axis
  • PheSAAlignment.PheSAResult
  • PheSAAlignmentOptimizer
  • PheSABindingHypothesis
  • PheSAMolecule
  • Pipeline
  • PlaneRule
  • Platform
  • PLPTerm
  • PointDouble
  • PointUtils
  • PolarSurfaceAreaPredictor
  • Polygon
  • PositionConstraint
  • PotentialEnergyTerm
  • PPGaussian
  • PPNode
  • PPNodeRGroup
  • PPNodeSimilarity
  • PPNodeViz
  • PPNodeVizTriangle
  • PPTriangle
  • PPTriangleCreator
  • PPTriangleMatcher
  • PPTriangleMatcher.AlignmentResult
  • ProgressController
  • ProgressListener
  • PropertyCalculator
  • ProteinSynthesizer
  • Quaternion
  • QuickMathCalculator
  • RDFileParser
  • Reaction
  • ReactionArrow
  • ReactionDragAdapter
  • ReactionDropAdapter
  • ReactionEncoder
  • ReactionSearch
  • ReactionSearchDataSource
  • ReactionSearchSpecification
  • ReactionTransferable
  • Reactor
  • RemarkParser
  • REPTerm
  • Residue
  • ResultFracDimCalc
  • ResultFragmentsStatistic
  • ResultObjective
  • RigidFragment
  • RigidFragmentCache
  • RigidFragmentCache.CacheEntry
  • RigidFragmentProvider
  • RingBoolean
  • RingCollection
  • RotatableBond
  • RunBondVector2IdCode
  • RXNFileCreator
  • RXNFileParser
  • RXNFileV3Creator
  • ScaffoldHelper
  • ScaledEditorKit
  • ScaledHTML
  • ScaledStyleSheet
  • ScorePoint
  • Sdf
  • Sdf.OnMolecule
  • SDFileMolecule
  • SDFileMoleculeDropAdapter
  • SDFileMoleculeTransferable
  • SDFileParser
  • Search
  • Searchable
  • SelectionAction
  • Selector
  • SelfOrganizedConformer
  • Separation
  • Separation.Relation
  • SimilarityCalculatorInfo
  • SimpleCanonizer
  • SimpleMetalTerm
  • SimplePPGaussian
  • SingularValueDecomposition
  • SiteParser
  • SizeOf
  • Sketch
  • SlidingWindow
  • SlidingWindowDistHist
  • SmilesCreator
  • SmilesParser
  • SmoothingSplineInterpolator
  • SolubilityPredictor
  • SolutionCompleteGraph
  • SortedList
  • SortedPair
  • SortedStringList
  • SplineFunction
  • SRSearcher
  • SSSearcher
  • SSSearcherWithIndex
  • StatisticalTorsionPotential
  • StatisticalTorsionTerm
  • Stbn
  • StereoMolecule
  • StraightLineRule
  • StrainTerm
  • StretchBend
  • String2DoubleArray
  • StringFunctions
  • StringReadChannel
  • StrokeLineCap
  • StrokeLineJoin
  • StructureAssembler
  • StructureCalculator
  • StructureInfo
  • StructureListener
  • StructureNameResolver
  • StructureSearch
  • StructureSearchController
  • StructureSearchDataSource
  • StructureSearchSpecification
  • StructureTransferData
  • SubFlexophoreGenerator
  • SubFlexophoreGenerator.ViolatedConditionsCount
  • SubGraphExtractor
  • SubGraphIndices
  • SubStructSearchBondIndex
  • SubStructSearchExhaustiveTreeWalker
  • SummaryFragments
  • SVGDepictor
  • SymmetryCalculator
  • SymmetryCorrectedRMSDCalculator
  • TableModelString
  • Tables
  • TautomerHelper
  • testChiralDia
  • testDiaID
  • testHoses
  • TetrahedralStereoRule
  • TextClipboardHandler
  • TextDrawingObject
  • ThreadMaster
  • ToolbarSelectionChange
  • Torsion
  • Torsion
  • TorsionAngle
  • TorsionConstraint
  • TorsionDB
  • TorsionDescriptor
  • TorsionDescriptorHelper
  • TorsionDetail
  • TorsionPrediction
  • TorsionRelevanceHelper
  • TorsionRule
  • TorsionSet
  • TorsionSetEliminationRule
  • TorsionSetStrategy
  • TorsionSetStrategyAdaptiveRandom
  • TorsionSetStrategyLikelySystematic
  • TorsionSetStrategyRandom
  • ToxicityPredictor
  • TreeMatcher
  • TreeMatcher.FeatureMatch
  • TreeMatcher.TreeMatching
  • TreeUtils
  • Triangle
  • UndoAction
  • UniqueFragmentEstimator
  • UniqueList
  • UniqueStringList
  • UnknownParityAction
  • UnparametrizedAtomTypeException
  • UpBondAction
  • VanDerWaals
  • VanDerWaals
  • VDWRadii
  • Vector3
  • VectorSimilarity
  • VerticalFlowLayout
  • VolumeGaussian
  • WMF
  • WMFConstants
  • WMFGraphics
  • WMFGraphics2D
  • ZoomRotateAction