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3d/filter.hh
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1 /* -*- mia-c++ -*-
2  *
3  * This file is part of MIA - a toolbox for medical image analysis
4  * Copyright (c) Leipzig, Madrid 1999-2017 Gert Wollny
5  *
6  * MIA is free software; you can redistribute it and/or modify
7  * it under the terms of the GNU General Public License as published by
8  * the Free Software Foundation; either version 3 of the License, or
9  * (at your option) any later version.
10  *
11  * This program is distributed in the hope that it will be useful,
12  * but WITHOUT ANY WARRANTY; without even the implied warranty of
13  * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
14  * GNU General Public License for more details.
15  *
16  * You should have received a copy of the GNU General Public License
17  * along with MIA; if not, see <http://www.gnu.org/licenses/>.
18  *
19  */
20 
21 #ifndef mia_3d_filter_hh
22 #define mia_3d_filter_hh
23 
24 #include <boost/any.hpp>
25 
26 #include <mia/3d/image.hh>
27 #include <mia/core/combiner.hh>
28 #include <mia/core/factory.hh>
29 #include <mia/core/filter.hh>
32 #include <mia/template/combiner.hh>
33 
35 
36 
44 
50 
56 
61 typedef std::shared_ptr<C3DFilter> P3DFilter;
62 
71 typedef std::shared_ptr<C3DImageCombiner> P3DImageCombiner;
73 
77 
78 
83 
84 
93 template <typename S>
94 std::vector<P3DFilter> create_filter_chain(const std::vector<S>& chain)
95 {
96  std::vector<P3DFilter> filters;
97 
98  for (typename std::vector<S>::const_iterator i = chain.begin();
99  i != chain.end(); ++i) {
100  cvdebug() << "Prepare filter " << *i << std::endl;
101  auto filter = C3DFilterPluginHandler::instance().produce(*i);
102 
103  if (!filter) {
104  std::stringstream error;
105  error << "Filter " << *i << " not found";
106  throw std::invalid_argument(error.str());
107  }
108 
109  filters.push_back(filter);
110  }
111 
112  return filters;
113 }
114 
120 
121 
125 inline P3DFilter produce_3dimage_filter(const char *descr)
126 {
127  return C3DFilterPluginHandler::instance().produce(descr);
128 }
129 
130 
138 P3DImage EXPORT_3D run_filter(const C3DImage& image, const char *filter);
139 
140 
149 P3DImage EXPORT_3D run_filter_chain(P3DImage image, const std::vector<const char *>& filters);
150 
151 
153 
154 
155 #endif
THandlerSingleton::instance
static const T & instance()
C3DImage
The generic base type of a 3D image.
Definition: 3d/image.hh:47
spacial_kernel.hh
C3DImageCombinerPlugin
TFactory< C3DImageCombiner > C3DImageCombinerPlugin
Definition: 3d/filter.hh:72
factory.hh
NS_MIA_BEGIN
#define NS_MIA_BEGIN
conveniance define to start the mia namespace
Definition: defines.hh:33
combiner.hh
filter_chain.hh
run_filter
P3DImage EXPORT_3D run_filter(const C3DImage &image, const char *filter)
convenience function: create and run a filter on an image
C3DImageCombinerPluginHandler
THandlerSingleton< TFactoryPluginHandler< C3DImageCombinerPlugin > > C3DImageCombinerPluginHandler
Plugin handler for image combiner plugins.
Definition: 3d/filter.hh:76
NS_MIA_END
#define NS_MIA_END
conveniance define to end the mia namespace
Definition: defines.hh:36
THandlerSingleton
the singleton that a plug-in handler really is
Definition: handler.hh:159
combiner.hh
filter
static F::result_type filter(const F &f, const B &b)
Definition: core/filter.hh:258
TImageCombiner
Definition: template/combiner.hh:33
produce_3dimage_filter
P3DFilter produce_3dimage_filter(const char *descr)
Definition: 3d/filter.hh:125
cvdebug
CDebugSink & cvdebug()
Definition: msgstream.hh:226
TFilterChain
create and use a chain of filters
Definition: filter_chain.hh:41
TDataFilter
Generic interface class to data filters.
Definition: core/filter.hh:87
EXPORT_3D
#define EXPORT_3D
Definition: defines3d.hh:45
image.hh
create_filter_chain
std::vector< P3DFilter > create_filter_chain(const std::vector< S > &chain)
Convenience function to create a filter chain from a series of filter descriptions.
Definition: 3d/filter.hh:94
FACTORY_TRAIT
#define FACTORY_TRAIT(F)
Definition: factory_trait.hh:69
C3DFilterPlugin
TDataFilterPlugin< C3DImage > C3DFilterPlugin
The 3D filter plugin type.
Definition: 3d/filter.hh:49
C3DFilter
TDataFilter< C3DImage > C3DFilter
Base class for 3D image filters. Filters are implemented as plug-ins.
Definition: 3d/filter.hh:43
P3DFilter
std::shared_ptr< C3DFilter > P3DFilter
The 3D filter shared pointer.
Definition: 3d/filter.hh:61
C3DImageCombiner
TImageCombiner< C3DImage > C3DImageCombiner
Base class for plug-ins that combine two 3D images in certain ways.
Definition: 3d/filter.hh:70
run_filter_chain
P3DImage EXPORT_3D run_filter_chain(P3DImage image, const std::vector< const char * > &filters)
P3DImage
C3DImage::Pointer P3DImage
define a shortcut to the 3D image shared pointer.
Definition: 3d/image.hh:135
C3DFilterPluginHandler
THandlerSingleton< TFactoryPluginHandler< C3DFilterPlugin > > C3DFilterPluginHandler
The 3D filter plugin handler.
Definition: 3d/filter.hh:55
filter.hh
TDataFilterPlugin
Generic image filter plugin base.
Definition: core/filter.hh:186
P3DImageCombiner
std::shared_ptr< C3DImageCombiner > P3DImageCombiner
Definition: 3d/filter.hh:71
C3DImageFilterChain
TFilterChain< C3DFilterPluginHandler > C3DImageFilterChain
3D filter chain to apply various filters in one run
Definition: 3d/filter.hh:119
TFactory
This is tha base of all plugins that create "things", like filters, cost functions time step operator...
Definition: factory.hh:51