Modifier and Type | Class and Description |
---|---|
class |
FbcAnd
fbc
An “and” relationship for gene products
|
class |
FbcOr
fbc
An “or” relationship for gene products
|
class |
GeneProductRef
fbc
Reference to a gene product of a reaction
|
Modifier and Type | Method and Description |
---|---|
FbcAssociation |
FbcAssociation.cloneObject()
Creates and returns a deep copy of this
FbcAssociation object. |
FbcAssociation |
ListOfFbcAssociations.get(long n)
Get a
FbcAssociation from the ListOfFbcAssociations . |
FbcAssociation |
ListOfFbcAssociations.get(java.lang.String sid)
Get a
FbcAssociation from the ListOfFbcAssociations based on its
identifier. |
FbcAssociation |
GeneProductAssociation.getAssociation()
Returns the 'association' element of this
GeneProductAssociation . |
FbcAssociation |
FbcAnd.getAssociation(long n)
Get the nth object from the
ListOfFbcAssociations . |
FbcAssociation |
FbcOr.getAssociation(long n)
Get a
Association from the ListOfFbcAssociations . |
FbcAssociation |
FbcAnd.getAssociation(java.lang.String sid)
Get a
Association from the ListOfFbcAssociations
based on its identifier. |
FbcAssociation |
FbcOr.getAssociation(java.lang.String sid)
Get a
Association from the ListOfFbcAssociations
based on its identifier. |
static FbcAssociation |
FbcAssociation.parseFbcInfixAssociation(java.lang.String association,
FbcModelPlugin plugin)
Parses a gene association in infix format and returns a corresponding
Association object. |
FbcAssociation |
ListOfFbcAssociations.remove(long n)
Removes the nth
FbcAssociation |
FbcAssociation |
ListOfFbcAssociations.remove(java.lang.String sid)
Removes the
FbcAssociation with the given identifier |
FbcAssociation |
FbcAnd.removeAssociation(long n)
|
FbcAssociation |
FbcOr.removeAssociation(long n)
|
FbcAssociation |
FbcAnd.removeAssociation(java.lang.String sid)
Removes the
Association with the given identifier from the ListOfFbcAssociations within this FbcAnd
and returns a pointer to it. |
FbcAssociation |
FbcOr.removeAssociation(java.lang.String sid)
Removes the
Association with the given identifier from the ListOfFbcAssociations within this FbcOr
and returns a pointer to it. |
Modifier and Type | Method and Description |
---|---|
int |
FbcAnd.addAssociation(FbcAssociation fa)
Adds a copy the given 'FbcAssociation' to this
FbcAnd . |
int |
FbcOr.addAssociation(FbcAssociation fa)
Adds a copy the given 'FbcAssociation' to this
FbcOr . |
int |
ListOfFbcAssociations.addFbcAssociation(FbcAssociation fa)
Adds a copy the given
FbcAssociation object to this
ListOfFbcAssociations . |
int |
GeneProductAssociation.setAssociation(FbcAssociation association)
Sets the 'association' element of this
GeneProductAssociation . |
Constructor and Description |
---|
FbcAssociation(FbcAssociation orig)
Copy constructor for
FbcAssociation . |