libpappsomspp
Library for mass spectrometry
timsdirectxicextractor.h
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1 /**
2  * \file pappsomspp/vendors/tims/xicextractor/timsdirectxicextractor.h
3  * \date 21/09/2019
4  * \author Olivier Langella
5  * \brief minimum functions to extract XICs from Tims Data
6  */
7 
8 /*******************************************************************************
9  * Copyright (c) 2019 Olivier Langella <Olivier.Langella@u-psud.fr>.
10  *
11  * This file is part of the PAPPSOms++ library.
12  *
13  * PAPPSOms++ is free software: you can redistribute it and/or modify
14  * it under the terms of the GNU General Public License as published by
15  * the Free Software Foundation, either version 3 of the License, or
16  * (at your option) any later version.
17  *
18  * PAPPSOms++ is distributed in the hope that it will be useful,
19  * but WITHOUT ANY WARRANTY; without even the implied warranty of
20  * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
21  * GNU General Public License for more details.
22  *
23  * You should have received a copy of the GNU General Public License
24  * along with PAPPSOms++. If not, see <http://www.gnu.org/licenses/>.
25  *
26  ******************************************************************************/
27 
28 #pragma once
29 
31 
32 namespace pappso
33 {
34 /**
35  * @todo write docs
36  */
37 class TimsDirectXicExtractor : public TimsXicExtractorInterface
38 {
39  public:
40  /**
41  * Default constructor
42  */
43  TimsDirectXicExtractor(const TimsData *mp_tims_data);
44 
45  /**
46  * Destructor
47  */
48  virtual ~TimsDirectXicExtractor();
49 
50 
51  protected:
52  virtual void extractTimsXicList(std::vector<TimsXicStructure> &timsXicList,
53  double rtRange) const override;
54 };
55 } // namespace pappso
pappso
Definition: aa.cpp:38
pappso::TimsDirectXicExtractor::extractTimsXicList
virtual void extractTimsXicList(std::vector< TimsXicStructure > &timsXicList, double rtRange) const override
extract XICs for given coordinates XICs are extracted given their coordinates : retention time target...
Definition: timsdirectxicextractor.cpp:43
pappso::TimsDirectXicExtractor::TimsDirectXicExtractor
TimsDirectXicExtractor(const TimsData *mp_tims_data)
Definition: timsdirectxicextractor.cpp:32
pappso::TimsDirectXicExtractor::~TimsDirectXicExtractor
virtual ~TimsDirectXicExtractor()
Definition: timsdirectxicextractor.cpp:37
timsxicextractorinterface.h
minimum functions to extract XICs from Tims Data
pappso::TimsXicExtractorInterface::TimsData
friend TimsData
Definition: timsxicextractorinterface.h:79