potential remove Nter Methionin
More...
#include <peptidemethioninremove.h>
potential remove Nter Methionin
Definition at line 55 of file peptidemethioninremove.h.
◆ PeptideMethioninRemove()
pappso::PeptideMethioninRemove::PeptideMethioninRemove |
( |
bool |
ism_isPotential | ) |
|
◆ ~PeptideMethioninRemove()
pappso::PeptideMethioninRemove::~PeptideMethioninRemove |
( |
| ) |
|
|
virtual |
◆ setPeptide()
void pappso::PeptideMethioninRemove::setPeptide |
( |
std::int8_t |
sequence_database_id, |
|
|
const ProteinSp & |
protein_sp, |
|
|
bool |
is_decoy, |
|
|
const QString & |
peptide, |
|
|
unsigned int |
start, |
|
|
bool |
is_nter, |
|
|
unsigned int |
missed_cleavage_number, |
|
|
bool |
semi_enzyme |
|
) |
| |
|
overridevirtual |
function to give the products of a protein digestion by an enzyme
- Parameters
-
sequence_database_id | integer that references the sequence fatabase (file, stream, url...) |
protein_sp | shared pointer on the protein that was digested |
is_decoy | tell if the current protein is a decoy (true) or normal (false) protein |
peptide | amino acid sequence of the peptide (string) produced by the digestion |
start | the position of the first amino acid of the peptide in the original protein sequence. the first amino acid of the protein is at position 1. |
is_nter | boolean to tell if the peptide is an Nter peptide (to allow Methionin Nter removal) |
missed_cleavage_number | number of missed cleavage sites (that the enzyme has not cut) fot the product |
semi_enzyme | boolean that tells if this peptide is the produce of a semi enzymatic lysis |
Implements pappso::EnzymeProductInterface.
Definition at line 58 of file peptidemethioninremove.cpp.
80 missed_cleavage_number,
93 missed_cleavage_number,
◆ setSink()
◆ m_isPotential
bool pappso::PeptideMethioninRemove::m_isPotential = true |
|
private |
◆ m_sink
The documentation for this class was generated from the following files: