libpappsomspp
Library for mass spectrometry
timsmsfilereader.h
Go to the documentation of this file.
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/**
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* \file pappsomspp/msfile/timsmsfilereader.h
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* \date 06/09/2019
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* \author Olivier Langella
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* \brief MSrun file reader for native Bruker TimsTOF raw data
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*/
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/*******************************************************************************
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* Copyright (c) 2019 Olivier Langella <Olivier.Langella@u-psud.fr>.
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*
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* This file is part of the PAPPSOms++ library.
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*
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* PAPPSOms++ is free software: you can redistribute it and/or modify
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* it under the terms of the GNU General Public License as published by
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* the Free Software Foundation, either version 3 of the License, or
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* (at your option) any later version.
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*
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* PAPPSOms++ is distributed in the hope that it will be useful,
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* but WITHOUT ANY WARRANTY; without even the implied warranty of
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* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
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* GNU General Public License for more details.
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*
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* You should have received a copy of the GNU General Public License
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* along with PAPPSOms++. If not, see <http://www.gnu.org/licenses/>.
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*
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******************************************************************************/
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#pragma once
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#include "
msfilereader.h
"
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#include "../msrun/msrunid.h"
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namespace
pappso
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{
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/**
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* @todo write docs
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*/
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class
TimsMsFileReader : MsFileReader
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{
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private
:
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virtual
std::size_t
initialize
();
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public
:
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TimsMsFileReader
(
const
QString &file_name);
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virtual
~TimsMsFileReader
();
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virtual
MzFormat
getFileFormat
()
override
;
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virtual
std::vector<MsRunIdCstSPtr>
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getMsRunIds
(
const
QString &run_prefix)
override
;
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MsRunReader
*
selectMsRunReader
(
const
QString &file_name)
const
;
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};
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}
// namespace pappso
pappso::TimsMsFileReader::getFileFormat
virtual MzFormat getFileFormat() override
Definition:
timsmsfilereader.cpp:89
pappso::TimsMsFileReader::~TimsMsFileReader
virtual ~TimsMsFileReader()
Definition:
timsmsfilereader.cpp:64
pappso
Definition:
aa.cpp:38
pappso::TimsMsFileReader::getMsRunIds
virtual std::vector< MsRunIdCstSPtr > getMsRunIds(const QString &run_prefix) override
Definition:
timsmsfilereader.cpp:96
pappso::TimsMsFileReader::initialize
virtual std::size_t initialize()
Definition:
timsmsfilereader.cpp:70
msfilereader.h
pappso::TimsMsFileReader::TimsMsFileReader
TimsMsFileReader(const QString &file_name)
Definition:
timsmsfilereader.cpp:56
pappso::MsRunReader
class PMSPP_LIB_DECL MsRunReader
Definition:
msrunreader.h:171
pappso::TimsMsFileReader::selectMsRunReader
MsRunReader * selectMsRunReader(const QString &file_name) const
pappso::MzFormat
MzFormat
Definition:
types.h:127
pappsomspp
msfile
timsmsfilereader.h
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