libpappsomspp
Library for mass spectrometry
peptidestrparser.h
Go to the documentation of this file.
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/*******************************************************************************
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* Copyright (c) 2015 Olivier Langella <Olivier.Langella@moulon.inra.fr>.
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*
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* This file is part of the PAPPSOms++ library.
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*
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* PAPPSOms++ is free software: you can redistribute it and/or modify
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* it under the terms of the GNU General Public License as published by
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* the Free Software Foundation, either version 3 of the License, or
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* (at your option) any later version.
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*
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* PAPPSOms++ is distributed in the hope that it will be useful,
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* but WITHOUT ANY WARRANTY; without even the implied warranty of
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* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
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* GNU General Public License for more details.
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*
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* You should have received a copy of the GNU General Public License
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* along with PAPPSOms++. If not, see <http://www.gnu.org/licenses/>.
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*
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* Contributors:
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* Olivier Langella <Olivier.Langella@moulon.inra.fr> - initial API and
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*implementation
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******************************************************************************/
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#pragma once
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#include "
peptide.h
"
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namespace
pappso
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{
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class
PMSPP_LIB_DECL
PeptideStrParser
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{
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public
:
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static
PeptideSp
parseString(
const
QString &pepstr);
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static
NoConstPeptideSp
parseNoConstString(
const
QString &pepstr);
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private
:
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static
void
parseStringToPeptide(
const
QString &pepstr, Peptide &peptide);
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private
:
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static
QRegExp _mod_parser;
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static
QRegExp _rx_psimod;
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static
QRegExp _rx_modmass;
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// static QMutex _mutex;
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};
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}
// namespace pappso
PMSPP_LIB_DECL
#define PMSPP_LIB_DECL
Definition:
exportinmportconfig.h:14
pappso
Definition:
aa.cpp:38
peptide.h
peptide model
pappso::PeptideSp
std::shared_ptr< const Peptide > PeptideSp
Definition:
aamodification.h:68
pappso::NoConstPeptideSp
std::shared_ptr< Peptide > NoConstPeptideSp
Definition:
peptide.h:111
pappsomspp
peptide
peptidestrparser.h
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