libpappsomspp
Library for mass spectrometry
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#include <massspectrumcombiner.h>
Public Member Functions | |
MassSpectrumCombiner () | |
Construct an uninitialized instance. More... | |
MassSpectrumCombiner (std::vector< pappso_double > bins, int decimalPlaces=-1) | |
MassSpectrumCombiner (int decimal_places) | |
MassSpectrumCombiner (MassSpectrumCombinerCstSPtr other) | |
MassSpectrumCombiner (const MassSpectrumCombiner &other) | |
MassSpectrumCombiner (const MassSpectrumCombiner &&other) | |
virtual | ~MassSpectrumCombiner () |
Destruct the instance. More... | |
std::vector< pappso_double >::const_iterator | begin () const |
std::vector< pappso_double >::const_iterator | end () const |
std::vector< pappso_double >::iterator | begin () |
std::vector< pappso_double >::iterator | end () |
void | setBins (std::vector< pappso_double > bins) |
const std::vector< pappso_double > & | getBins () const |
std::size_t | binCount () const |
virtual MapTrace & | combine (MapTrace &map_trace, const Trace &trace) const |
virtual MapTrace & | combine (MapTrace &map_trace_out, const MapTrace &map_trace_in) const |
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MassDataCombinerInterface (int decimal_places=-1) | |
virtual | ~MassDataCombinerInterface () |
void | setDecimalPlaces (int value) |
int | getDecimalPlaces () const |
void | setFilterResampleKeepXRange (const FilterResampleKeepXRange &range) |
virtual MapTrace & | combine (MapTrace &map_trace, Iterator begin, Iterator end) |
Protected Member Functions | |
std::vector< pappso_double >::iterator | findBin (pappso_double mz) |
Find the bin that will contain mz . More... | |
Protected Attributes | |
std::vector< pappso_double > | m_bins |
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int | m_decimalPlaces = -1 |
Number of decimals to use for the keys (x values) More... | |
bool | m_isApplyXRangeFilter = false |
FilterResampleKeepXRange | m_filterXRange |
Private Member Functions | |
virtual MapTrace & | combineNoFilteringStep (MapTrace &map_trace, const Trace &trace) const =0 |
Additional Inherited Members | |
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using | Iterator = std::vector< const Trace * >::const_iterator |
Definition at line 29 of file massspectrumcombiner.h.
pappso::MassSpectrumCombiner::MassSpectrumCombiner | ( | ) |
Construct an uninitialized instance.
Definition at line 28 of file massspectrumcombiner.cpp.
pappso::MassSpectrumCombiner::MassSpectrumCombiner | ( | std::vector< pappso_double > | bins, |
int | decimalPlaces = -1 |
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Definition at line 33 of file massspectrumcombiner.cpp.
pappso::MassSpectrumCombiner::MassSpectrumCombiner | ( | int | decimal_places | ) |
Definition at line 40 of file massspectrumcombiner.cpp.
pappso::MassSpectrumCombiner::MassSpectrumCombiner | ( | MassSpectrumCombinerCstSPtr | other | ) |
pappso::MassSpectrumCombiner::MassSpectrumCombiner | ( | const MassSpectrumCombiner & | other | ) |
pappso::MassSpectrumCombiner::MassSpectrumCombiner | ( | const MassSpectrumCombiner && | other | ) |
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virtual |
std::vector<pappso_double>::iterator pappso::MassSpectrumCombiner::begin | ( | ) |
std::vector< pappso_double >::const_iterator pappso::MassSpectrumCombiner::begin | ( | ) | const |
Definition at line 91 of file massspectrumcombiner.cpp.
References m_bins.
std::size_t pappso::MassSpectrumCombiner::binCount | ( | ) | const |
Definition at line 119 of file massspectrumcombiner.cpp.
References m_bins.
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virtual |
Implements pappso::MassDataCombinerInterface.
Definition at line 137 of file massspectrumcombiner.cpp.
References combineNoFilteringStep(), pappso::FilterResampleKeepXRange::filter(), pappso::MassDataCombinerInterface::m_filterXRange, and pappso::MassDataCombinerInterface::m_isApplyXRangeFilter.
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virtual |
Implements pappso::MassDataCombinerInterface.
Definition at line 168 of file massspectrumcombiner.cpp.
References combineNoFilteringStep(), pappso::FilterResampleKeepXRange::filter(), pappso::MassDataCombinerInterface::m_filterXRange, and pappso::MassDataCombinerInterface::m_isApplyXRangeFilter.
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privatepure virtual |
Implemented in pappso::MassSpectrumMinusCombiner, and pappso::MassSpectrumPlusCombiner.
Referenced by combine().
std::vector<pappso_double>::iterator pappso::MassSpectrumCombiner::end | ( | ) |
std::vector< pappso_double >::const_iterator pappso::MassSpectrumCombiner::end | ( | ) | const |
Definition at line 98 of file massspectrumcombiner.cpp.
References m_bins.
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protected |
Find the bin that will contain mz
.
Definition at line 128 of file massspectrumcombiner.cpp.
References m_bins, and pappso::mz.
const std::vector< pappso_double > & pappso::MassSpectrumCombiner::getBins | ( | ) | const |
Definition at line 84 of file massspectrumcombiner.cpp.
References m_bins.
void pappso::MassSpectrumCombiner::setBins | ( | std::vector< pappso_double > | bins | ) |
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protected |
Definition at line 58 of file massspectrumcombiner.h.
Referenced by begin(), binCount(), pappso::MassSpectrumPlusCombiner::combineNoFilteringStep(), pappso::MassSpectrumMinusCombiner::combineNoFilteringStep(), end(), findBin(), getBins(), MassSpectrumCombiner(), setBins(), and ~MassSpectrumCombiner().