Package org.jmol.shapebio
Class Trace
- java.lang.Object
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- org.jmol.shape.Shape
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- org.jmol.shapebio.BioShapeCollection
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- org.jmol.shapebio.Trace
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public class Trace extends BioShapeCollection
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Field Summary
Fields Modifier and Type Field Description private static int
PUTTY_AbsoluteLinear
private static int
PUTTY_AbsoluteNonlinear
private static int
PUTTY_ImpliedRMS
private static int
PUTTY_NormalizedLinear
private static int
PUTTY_NormalizedNonlinear
private static int
PUTTY_RelativeLinear
private static int
PUTTY_RelativeNonlinear
private static int
PUTTY_ScaledLinear
private static int
PUTTY_ScaledNonlinear
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Fields inherited from class org.jmol.shapebio.BioShapeCollection
atoms, bioShapes, isActive, madDnaRna, madHelixSheet, madOn, madTurnRandom
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Fields inherited from class org.jmol.shape.Shape
bsColixSet, bsSizeSet, isBioShape, ms, myType, RADIUS_MAX, shapeID, translucentAllowed, translucentLevel, vf, vwr
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Constructor Summary
Constructors Constructor Description Trace()
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Method Summary
All Methods Instance Methods Concrete Methods Modifier and Type Method Description void
initShape()
void
setProperty(java.lang.String propertyName, java.lang.Object value, javajs.util.BS bsSelected)
private void
setPutty(float[] info, javajs.util.BS bsAtoms)
PyMOL-based "putty"-
Methods inherited from class org.jmol.shapebio.BioShapeCollection
findNearestAtomIndex, getBioShape, getMpsShapeCount, getShapeState, getSizeG, initialize, initModelSet, replaceGroup, setAtomClickability, setModelVisibilityFlags, setPropBSC, setShapeSizeRD
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Methods inherited from class org.jmol.shape.Shape
appendCmd, checkBoundsMinMax, checkObjectClicked, checkObjectDragged, checkObjectHovered, coordinateInRange, encodeColor, getColix, getColixA, getColixB, getColixI, getColorCommand, getColorCommandUnk, getFontCommand, getIndexFromName, getProperty, getPropertyData, getPropShape, getShapeDetail, getSize, getTranslucentLabel, initializeShape, setModelSet, setPropS, setSize, setSizeRD, wasClicked
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Field Detail
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PUTTY_NormalizedNonlinear
private static final int PUTTY_NormalizedNonlinear
- See Also:
- Constant Field Values
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PUTTY_RelativeNonlinear
private static final int PUTTY_RelativeNonlinear
- See Also:
- Constant Field Values
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PUTTY_ScaledNonlinear
private static final int PUTTY_ScaledNonlinear
- See Also:
- Constant Field Values
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PUTTY_AbsoluteNonlinear
private static final int PUTTY_AbsoluteNonlinear
- See Also:
- Constant Field Values
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PUTTY_NormalizedLinear
private static final int PUTTY_NormalizedLinear
- See Also:
- Constant Field Values
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PUTTY_RelativeLinear
private static final int PUTTY_RelativeLinear
- See Also:
- Constant Field Values
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PUTTY_ScaledLinear
private static final int PUTTY_ScaledLinear
- See Also:
- Constant Field Values
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PUTTY_AbsoluteLinear
private static final int PUTTY_AbsoluteLinear
- See Also:
- Constant Field Values
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PUTTY_ImpliedRMS
private static final int PUTTY_ImpliedRMS
- See Also:
- Constant Field Values
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Method Detail
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initShape
public void initShape()
- Overrides:
initShape
in classBioShapeCollection
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setProperty
public void setProperty(java.lang.String propertyName, java.lang.Object value, javajs.util.BS bsSelected)
- Overrides:
setProperty
in classBioShapeCollection
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setPutty
private void setPutty(float[] info, javajs.util.BS bsAtoms)
PyMOL-based "putty"- Parameters:
info
- [quality,radius,range,scale_min,scale_max,scale_power,transform]bsAtoms
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