Package org.jmol.viewer
Class ShapeManager
- java.lang.Object
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- org.jmol.viewer.ShapeManager
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public class ShapeManager extends java.lang.Object
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Field Summary
Fields Modifier and Type Field Description javajs.util.BS
bsRenderableAtoms
javajs.util.BS
bsSlabbedInternal
private static int
clickableMax
private static int[]
hoverable
private ModelSet
ms
private int[]
navMinMax
private java.lang.Object
scaleText
Shape[]
shapes
Viewer
vwr
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Constructor Summary
Constructors Constructor Description ShapeManager(Viewer vwr)
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Method Summary
All Methods Instance Methods Concrete Methods Modifier and Type Method Description (package private) boolean
checkFrankclicked(int x, int y)
void
checkInheritedShapes()
starting with Jmol 13.1.13, isosurfaces can use "property color" to inherit the color of the underlying atoms.(package private) java.util.Map<java.lang.String,java.lang.Object>
checkObjectClicked(int x, int y, int modifiers, javajs.util.BS bsVisible, boolean drawPicking)
(package private) boolean
checkObjectDragged(int prevX, int prevY, int x, int y, int modifiers, javajs.util.BS bsVisible, int iShape)
(package private) boolean
checkObjectHovered(int x, int y, javajs.util.BS bsVisible, boolean checkBonds)
void
deleteShapeAtoms(java.lang.Object[] value, javajs.util.BS bs)
(package private) void
deleteVdwDependentShapes(javajs.util.BS bs)
int[]
finalizeAtoms(javajs.util.BS bsTranslateSelected, boolean finalizeParams)
void
findNearestShapeAtomIndex(int x, int y, Atom[] closest, javajs.util.BS bsNot)
float
getAtomShapeValue(int tok, Group group, int atomIndex)
(package private) void
getObjectMap(java.util.Map<java.lang.String,?> map, boolean withDollar)
(package private) java.lang.Object
getProperty(java.lang.Object paramInfo)
Shape
getShape(int i)
int
getShapeIdFromObjectName(java.lang.String objectName)
Returns the shape type index for a shape object given the object name.boolean
getShapePropertyData(int shapeID, java.lang.String propertyName, java.lang.Object[] data)
java.lang.Object
getShapePropertyIndex(int shapeID, java.lang.String propertyName, int index)
void
loadDefaultShapes(ModelSet newModelSet)
Shape
loadShape(int shapeID)
void
notifyAtomPositionsChanged(int baseModel, javajs.util.BS bs, javajs.util.M4 mat)
void
releaseShape(int shapeID)
void
replaceGroup(Group g0, Group g1)
void
resetBioshapes(javajs.util.BS bsAllAtoms)
void
resetShapes(boolean cacheScale)
void
restrictSelected(boolean isBond, boolean doInvert)
void
setAtomLabel(java.lang.String strLabel, int i)
void
setLabel(java.lang.Object strLabel, javajs.util.BS bsSelection)
void
setModelSet(ModelSet modelSet)
(package private) void
setModelVisibility()
Sets shape visibility flags, including ATOM_VIS_INFRAME and ATOM_VIS_NOTHIDDEN.void
setParallel()
void
setScale()
void
setShapePropertyBs(int shapeID, java.lang.String propertyName, java.lang.Object value, javajs.util.BS bsSelected)
void
setShapeSizeBs(int shapeID, int size, RadiusData rd, javajs.util.BS bsSelected)
private void
setShapeVis()
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Field Detail
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ms
private ModelSet ms
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shapes
public Shape[] shapes
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vwr
public Viewer vwr
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scaleText
private java.lang.Object scaleText
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hoverable
private static final int[] hoverable
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clickableMax
private static int clickableMax
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bsRenderableAtoms
public final javajs.util.BS bsRenderableAtoms
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bsSlabbedInternal
public final javajs.util.BS bsSlabbedInternal
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navMinMax
private final int[] navMinMax
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Constructor Detail
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ShapeManager
public ShapeManager(Viewer vwr)
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Method Detail
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setParallel
public void setParallel()
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findNearestShapeAtomIndex
public void findNearestShapeAtomIndex(int x, int y, Atom[] closest, javajs.util.BS bsNot)
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getShapePropertyIndex
public java.lang.Object getShapePropertyIndex(int shapeID, java.lang.String propertyName, int index)
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getShapePropertyData
public boolean getShapePropertyData(int shapeID, java.lang.String propertyName, java.lang.Object[] data)
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getShapeIdFromObjectName
public int getShapeIdFromObjectName(java.lang.String objectName)
Returns the shape type index for a shape object given the object name.- Parameters:
objectName
- (string) string name of object- Returns:
- shapeType (int) integer corresponding to the shape type index see ShapeManager.shapes[].
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loadDefaultShapes
public void loadDefaultShapes(ModelSet newModelSet)
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loadShape
public Shape loadShape(int shapeID)
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notifyAtomPositionsChanged
public void notifyAtomPositionsChanged(int baseModel, javajs.util.BS bs, javajs.util.M4 mat)
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releaseShape
public void releaseShape(int shapeID)
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setScale
public void setScale()
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resetShapes
public void resetShapes(boolean cacheScale)
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setShapeSizeBs
public void setShapeSizeBs(int shapeID, int size, RadiusData rd, javajs.util.BS bsSelected)
- Parameters:
shapeID
-size
- in milliangstromsrd
-bsSelected
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setLabel
public void setLabel(java.lang.Object strLabel, javajs.util.BS bsSelection)
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setShapePropertyBs
public void setShapePropertyBs(int shapeID, java.lang.String propertyName, java.lang.Object value, javajs.util.BS bsSelected)
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checkFrankclicked
boolean checkFrankclicked(int x, int y)
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checkObjectClicked
java.util.Map<java.lang.String,java.lang.Object> checkObjectClicked(int x, int y, int modifiers, javajs.util.BS bsVisible, boolean drawPicking)
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checkObjectDragged
boolean checkObjectDragged(int prevX, int prevY, int x, int y, int modifiers, javajs.util.BS bsVisible, int iShape)
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checkObjectHovered
boolean checkObjectHovered(int x, int y, javajs.util.BS bsVisible, boolean checkBonds)
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deleteShapeAtoms
public void deleteShapeAtoms(java.lang.Object[] value, javajs.util.BS bs)
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deleteVdwDependentShapes
void deleteVdwDependentShapes(javajs.util.BS bs)
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getAtomShapeValue
public float getAtomShapeValue(int tok, Group group, int atomIndex)
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getObjectMap
void getObjectMap(java.util.Map<java.lang.String,?> map, boolean withDollar)
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getProperty
java.lang.Object getProperty(java.lang.Object paramInfo)
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getShape
public Shape getShape(int i)
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resetBioshapes
public void resetBioshapes(javajs.util.BS bsAllAtoms)
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setAtomLabel
public void setAtomLabel(java.lang.String strLabel, int i)
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setModelVisibility
void setModelVisibility()
Sets shape visibility flags, including ATOM_VIS_INFRAME and ATOM_VIS_NOTHIDDEN.
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setShapeVis
private void setShapeVis()
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finalizeAtoms
public int[] finalizeAtoms(javajs.util.BS bsTranslateSelected, boolean finalizeParams)
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setModelSet
public void setModelSet(ModelSet modelSet)
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checkInheritedShapes
public void checkInheritedShapes()
starting with Jmol 13.1.13, isosurfaces can use "property color" to inherit the color of the underlying atoms. This is then dynamic
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restrictSelected
public void restrictSelected(boolean isBond, boolean doInvert)
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