Package org.jmol.adapter.readers.cif
Class TopoCifParser.TAtom
- java.lang.Object
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- javajs.util.T3
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- javajs.util.P3
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- org.jmol.adapter.smarter.Atom
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- org.jmol.adapter.readers.cif.TopoCifParser.TAtom
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- All Implemented Interfaces:
java.io.Serializable
,java.lang.Cloneable
,javajs.api.JSONEncodable
,TopoCifParser.TPoint
- Enclosing class:
- TopoCifParser
private class TopoCifParser.TAtom extends Atom implements TopoCifParser.TPoint
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Field Summary
Fields Modifier and Type Field Description (package private) java.lang.String
atomLabel
(package private) java.lang.String
id
(package private) int
idx
private boolean
isFinalized
(package private) java.lang.String
line
(package private) java.lang.String
linkID
(package private) TopoCifParser.TNet
net
(package private) java.lang.String
nodeID
(package private) int
symop
private javajs.util.P3
trans
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Fields inherited from class org.jmol.adapter.smarter.Atom
altLoc, anisoBorU, atomName, atomSerial, atomSetIndex, atomSite, bfactor, bondingRadius, bsSymmetry, chainID, elementNumber, elementSymbol, foccupancy, formalCharge, group3, ignoreSymmetry, index, insertionCode, isHetero, partialCharge, radius, sequenceNumber, tensors, typeSymbol, vib
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Constructor Summary
Constructors Constructor Description TAtom()
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Method Summary
All Methods Instance Methods Concrete Methods Modifier and Type Method Description (package private) void
finalizeAtom()
private TopoCifParser.TLink
getLinkById(java.lang.String linkID)
TopoCifParser.TNet
getNet()
(package private) TopoCifParser.TAtom
getTClone()
(package private) boolean
setAtom(int[] a, java.lang.String line)
java.lang.String
toString()
Returns a string that contains the values of this Tuple3f.-
Methods inherited from class org.jmol.adapter.smarter.Atom
addTensor, copyTo, getClone, getElementSymbol, isValidSym1, isValidSym2, isValidSymNoCase
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Field Detail
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id
java.lang.String id
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atomLabel
java.lang.String atomLabel
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nodeID
java.lang.String nodeID
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linkID
java.lang.String linkID
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symop
int symop
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trans
private javajs.util.P3 trans
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line
java.lang.String line
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isFinalized
private boolean isFinalized
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idx
int idx
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net
TopoCifParser.TNet net
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Method Detail
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getTClone
TopoCifParser.TAtom getTClone()
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getNet
public TopoCifParser.TNet getNet()
- Specified by:
getNet
in interfaceTopoCifParser.TPoint
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setAtom
boolean setAtom(int[] a, java.lang.String line)
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finalizeAtom
void finalizeAtom() throws java.lang.Exception
- Throws:
java.lang.Exception
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getLinkById
private TopoCifParser.TLink getLinkById(java.lang.String linkID)
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toString
public java.lang.String toString()
Description copied from class:javajs.util.T3
Returns a string that contains the values of this Tuple3f. The form is (x,y,z).- Overrides:
toString
in classjavajs.util.T3
- Returns:
- the String representation
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