Class StatusListener

    • Field Detail

      • jSpecViewFrame

        private jspecview.application.MainFrame jSpecViewFrame
      • jSpecViewForceNew

        private boolean jSpecViewForceNew
      • lastSimulate

        private java.lang.String lastSimulate
      • nboOptions

        private java.util.Map<java.lang.String,​java.lang.Object> nboOptions
      • modificationMode

        private int modificationMode
      • propertiesFileName

        private static java.lang.String propertiesFileName
    • Method Detail

      • setViewer

        public void setViewer​(Viewer vwr)
      • notifyStructureModified

        private void notifyStructureModified​(int atomIndex,
                                             int modelIndex,
                                             int mode)
        Parameters:
        atomIndex -
        modelIndex -
        mode -
      • setCallbackFunction

        public void setCallbackFunction​(java.lang.String callbackType,
                                        java.lang.String callbackFunction)
        Specified by:
        setCallbackFunction in interface JmolCallbackListener
      • eval

        public java.lang.String eval​(java.lang.String strEval)
        Specified by:
        eval in interface JmolStatusListener
      • createImage

        public java.lang.String createImage​(java.lang.String fileName,
                                            java.lang.String type,
                                            java.lang.Object text_or_bytes,
                                            int quality)
        Description copied from interface: JmolStatusListener
        Starting with Jmol 11.8.RC5, for a context where the Jmol application is embedded in another application simply to send the returned message to the application. In this way any application can have access to the WRITE command.
        Specified by:
        createImage in interface JmolStatusListener
        Parameters:
        fileName -
        type -
        text_or_bytes -
        quality -
        Returns:
        null ("you do it" or canceled) or a message starting with OK or an error message
      • notifyAtomPicked

        private void notifyAtomPicked​(java.lang.String info)
      • notifyFileLoaded

        private void notifyFileLoaded​(java.lang.String fullPathName,
                                      java.lang.String fileName,
                                      java.lang.String modelName,
                                      java.lang.String errorMsg,
                                      java.lang.Boolean isAsync)
      • sendConsoleMessage

        private void sendConsoleMessage​(java.lang.String strStatus)
      • functionXY

        public float[][] functionXY​(java.lang.String functionName,
                                    int nX,
                                    int nY)
        this is just a test method for isosurface FUNCTIONXY
        Specified by:
        functionXY in interface JmolStatusListener
        Parameters:
        functionName -
        nX -
        nY -
        Returns:
        f(x,y) as a 2D array
      • functionXYZ

        public float[][][] functionXYZ​(java.lang.String functionName,
                                       int nX,
                                       int nY,
                                       int nZ)
        Description copied from interface: JmolStatusListener
        for isosurface FUNCTIONXYZ
        Specified by:
        functionXYZ in interface JmolStatusListener
        Returns:
        3D array or null
      • checkJSpecView

        private void checkJSpecView​(boolean closeAll)
      • setJSpecView

        public void setJSpecView​(java.lang.String peaks,
                                 boolean doLoadCheck,
                                 boolean isFileLoad)
      • setProperties

        public void setProperties​(java.util.Properties properties)
        Specified by:
        setProperties in interface JSVInterface
      • saveProperties

        public void saveProperties​(java.util.Properties properties)
        Specified by:
        saveProperties in interface JSVInterface
      • exitJSpecView

        public void exitJSpecView​(boolean withDialog,
                                  java.lang.Object frame)
        Specified by:
        exitJSpecView in interface JSVInterface
        Parameters:
        withDialog -
        frame -
      • runScript

        public void runScript​(java.lang.String script)
        no queuing here -- called by MainFrame
        Specified by:
        runScript in interface JSVInterface
        Parameters:
        script -
      • syncToJmol

        public void syncToJmol​(java.lang.String msg)
        Specified by:
        syncToJmol in interface JSVInterface
        Parameters:
        msg -