Class Mesh

    • Field Detail

      • PREVIOUS_MESH_ID

        public static final java.lang.String PREVIOUS_MESH_ID
        See Also:
        Constant Field Values
      • title

        public java.lang.String[] title
      • meshColix

        public short meshColix
      • normixes

        public short[] normixes
      • lineData

        public javajs.util.Lst<javajs.util.P3[]> lineData
      • thisID

        public java.lang.String thisID
      • isValid

        public boolean isValid
      • scriptCommand

        public java.lang.String scriptCommand
      • colorCommand

        public java.lang.String colorCommand
      • lattice

        public javajs.util.P3 lattice
      • symops

        public javajs.util.M4[] symops
      • symopNormixes

        public short[][] symopNormixes
      • visible

        public boolean visible
      • lighting

        public int lighting
      • colorType

        public int colorType
      • haveXyPoints

        public boolean haveXyPoints
      • diameter

        public int diameter
      • width

        public float width
      • ptCenter

        public javajs.util.P3 ptCenter
      • linkedMesh

        public Mesh linkedMesh
      • vertexColorMap

        public java.util.Map<java.lang.String,​javajs.util.BS> vertexColorMap
      • vAB

        public javajs.util.V3 vAB
      • vTemp

        public javajs.util.V3 vTemp
      • color

        public int color
      • useColix

        public boolean useColix
      • scale3d

        public float scale3d
      • index

        public int index
      • atomIndex

        public int atomIndex
      • modelIndex

        public int modelIndex
      • visibilityFlags

        public int visibilityFlags
      • insideOut

        public boolean insideOut
      • checkByteCount

        public int checkByteCount
      • normalsInverted

        private boolean normalsInverted
      • showContourLines

        public boolean showContourLines
      • showPoints

        public boolean showPoints
      • drawTriangles

        public boolean drawTriangles
      • fillTriangles

        public boolean fillTriangles
      • showTriangles

        public boolean showTriangles
      • frontOnly

        public boolean frontOnly
      • isShell

        public boolean isShell
      • isTwoSided

        public boolean isTwoSided
      • havePlanarContours

        public boolean havePlanarContours
      • bsTemp

        protected javajs.util.BS bsTemp
      • colorDensity

        public boolean colorDensity
      • cappingObject

        public java.lang.Object cappingObject
      • slabbingObject

        public java.lang.Object slabbingObject
      • volumeRenderPointSize

        public float volumeRenderPointSize
      • connectedAtoms

        public int[] connectedAtoms
      • isModelConnected

        public boolean isModelConnected
      • recalcAltVertices

        public boolean recalcAltVertices
      • symopColixes

        public short[] symopColixes
    • Constructor Detail

      • Mesh

        public Mesh()
        always use Mesh().mesh1(thisID, colix, index)
    • Method Detail

      • setVisibilityFlags

        public void setVisibilityFlags​(int n)
      • mesh1

        public Mesh mesh1​(Viewer vwr,
                          java.lang.String thisID,
                          short colix,
                          int index)
      • clear

        public void clear​(java.lang.String meshType)
      • clearMesh

        public void clearMesh​(java.lang.String meshType)
      • initialize

        public void initialize​(int lighting,
                               javajs.util.T3[] vertices,
                               javajs.util.P4 plane)
      • setNormixes

        public short[] setNormixes​(javajs.util.V3[] normals)
      • getNormals

        public javajs.util.V3[] getNormals​(javajs.util.T3[] vertices,
                                           javajs.util.P4 plane)
      • setLighting

        public void setLighting​(int lighting)
      • flipLighting

        private void flipLighting​(int lighting)
      • invertNormixes

        private void invertNormixes()
      • setTranslucent

        public void setTranslucent​(boolean isTranslucent,
                                   float iLevel)
      • sumVertexNormals

        protected void sumVertexNormals​(javajs.util.T3[] vertices,
                                        javajs.util.V3[] normals)
      • sumVertexNormals2

        protected static void sumVertexNormals2​(Mesh m,
                                                javajs.util.T3[] vertices,
                                                javajs.util.V3[] normals)
      • getMinDistance2ForVertexGrouping

        protected float getMinDistance2ForVertexGrouping()
      • getState

        public java.lang.String getState​(java.lang.String type)
      • getRendering

        protected java.lang.String getRendering()
      • getOffsetVertices

        public javajs.util.P3[] getOffsetVertices​(javajs.util.P4 thePlane)
      • setShowWithin

        public void setShowWithin​(javajs.util.Lst<javajs.util.P3> showWithinPoints,
                                  float showWithinDistance2,
                                  boolean isWithinNot)
        Parameters:
        showWithinPoints -
        showWithinDistance2 -
        isWithinNot -
      • checkWithin

        public static boolean checkWithin​(javajs.util.T3 pti,
                                          javajs.util.Lst<javajs.util.P3> withinPoints,
                                          float withinDistance2,
                                          boolean isWithinNot)
      • getVertexIndexFromNumber

        public int getVertexIndexFromNumber​(int vertexIndex)
      • getVisibleVertexBitSet

        public javajs.util.BS getVisibleVertexBitSet()
      • getVisibleVBS

        protected javajs.util.BS getVisibleVBS()
      • setTokenProperty

        public void setTokenProperty​(int tokProp,
                                     boolean bProp)
      • getInfo

        java.lang.Object getInfo​(boolean isAll)
      • getBoundingBox

        public javajs.util.P3[] getBoundingBox()
      • rotateTranslate

        public void rotateTranslate​(javajs.util.Quat q,
                                    javajs.util.T3 offset,
                                    boolean isAbsolute)
      • getNormalsTemp

        public javajs.util.V3[] getNormalsTemp()