Package htsjdk.samtools.cram.structure
Class Container
- java.lang.Object
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- htsjdk.samtools.cram.structure.Container
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public class Container extends Object
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Field Summary
Fields Modifier and Type Field Description int
alignmentSpan
int
alignmentStart
long
bases
int
blockCount
Block[]
blocks
Container datalong
buildHeaderTime
long
buildSlicesTime
int
checksum
int
containerByteSize
Byte size of the content excluding header.long
globalRecordCounter
CompressionHeader
header
int[]
landmarks
int
nofRecords
long
offset
Container start in the stream.long
parseTime
long
readTime
int
sequenceId
Slice[]
slices
long
writeTime
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Constructor Summary
Constructors Constructor Description Container()
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Field Detail
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containerByteSize
public int containerByteSize
Byte size of the content excluding header.
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sequenceId
public int sequenceId
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alignmentStart
public int alignmentStart
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alignmentSpan
public int alignmentSpan
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nofRecords
public int nofRecords
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globalRecordCounter
public long globalRecordCounter
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bases
public long bases
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blockCount
public int blockCount
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landmarks
public int[] landmarks
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checksum
public int checksum
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blocks
public Block[] blocks
Container data
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header
public CompressionHeader header
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slices
public Slice[] slices
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buildHeaderTime
public long buildHeaderTime
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buildSlicesTime
public long buildSlicesTime
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writeTime
public long writeTime
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parseTime
public long parseTime
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readTime
public long readTime
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offset
public long offset
Container start in the stream.
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