Class CramRecordReader
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- htsjdk.samtools.cram.encoding.reader.AbstractReader
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- htsjdk.samtools.cram.encoding.reader.CramRecordReader
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public class CramRecordReader extends AbstractReader
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Field Summary
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Fields inherited from class htsjdk.samtools.cram.encoding.reader.AbstractReader
alignmentStartCodec, APDelta, baseCodec, basesCodec, baseSubstitutionCodec, bitFlagsCodec, captureReadNames, compressionBitFlagsCodec, deletionLengthCodec, distanceToNextFragmentCodec, hardClipCodec, insertionCodec, insertSizeCodec, mappingScoreCodec, mateAlignmentStartCodec, mateBitFlagCodec, mateReferenceIdCodec, numberOfReadFeaturesCodec, paddingCodec, qualityScoreCodec, qualityScoresCodec, readFeatureCodeCodec, readFeaturePositionCodec, readGroupCodec, readLengthCodec, readNameCodec, refId, refIdCodec, refSkipCodec, scoresCodec, softClipCodec, tagIdDictionary, tagIdListCodec, tagValueCodecs
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Constructor Summary
Constructors Constructor Description CramRecordReader(ValidationStringency validationStringency)
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Constructor Detail
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CramRecordReader
public CramRecordReader(ValidationStringency validationStringency)
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Method Detail
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read
public void read(CramCompressionRecord cramRecord)
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