tip

tip — SPM tip methods

Functions

Types and Values

Includes

#include <libprocess/gwyprocess.h>

Description

Functions

GwySetFractionFunc ()

gboolean
(*GwySetFractionFunc) (gdouble fraction);


GwySetMessageFunc ()

gboolean
(*GwySetMessageFunc) (const gchar *message);


GwyTipModelFunc ()

void
(*GwyTipModelFunc) (GwyDataField *tip,
                    gdouble height,
                    gdouble radius,
                    gdouble rotation,
                    gdouble *params);


GwyTipGuessFunc ()

void
(*GwyTipGuessFunc) (GwyDataField *data,
                    gdouble height,
                    gdouble radius,
                    gdouble *params,
                    gint *xres,
                    gint *yres);


gwy_tip_model_get_npresets ()

gint
gwy_tip_model_get_npresets (void);

Find number of actual tip model presets.

Returns

Number of presets.


gwy_tip_model_get_preset ()

const GwyTipModelPreset *
gwy_tip_model_get_preset (gint preset_id);

Get data related to tip preset.

Parameters

preset_id

Preset identifier.

 

Returns

Chosen preset data.


gwy_tip_model_get_preset_by_name ()

const GwyTipModelPreset *
gwy_tip_model_get_preset_by_name (const gchar *name);

Get data related to preset with specified name.

Parameters

name

Name of tip (e. g. "contact").

 

Returns

Chosen preset data.


gwy_tip_model_get_preset_id ()

gint
gwy_tip_model_get_preset_id (const GwyTipModelPreset *preset);

Get preset identifier within all presets.

Parameters

preset

Tip model preset.

 

Returns

Preset id.


gwy_tip_model_get_preset_tip_name ()

const gchar *
gwy_tip_model_get_preset_tip_name (const GwyTipModelPreset *preset);

Get name of the preset (e. g. "contact").

Parameters

preset

Tip model preset.

 

Returns

Preset name.


gwy_tip_model_get_preset_group_name ()

const gchar *
gwy_tip_model_get_preset_group_name (const GwyTipModelPreset *preset);

Get group name of preset (e. g. "analytical".)

Parameters

preset

Tip model preset.

 

Returns

Preset group name.


gwy_tip_model_get_preset_nparams ()

gint
gwy_tip_model_get_preset_nparams (const GwyTipModelPreset *preset);

Get number of tip preset parameters.

Parameters

preset

Tip model preset.

 

Returns

Number of parameters.


gwy_tip_dilation ()

GwyDataField *
gwy_tip_dilation (GwyDataField *tip,
                  GwyDataField *surface,
                  GwyDataField *result,
                  GwySetFractionFunc set_fraction,
                  GwySetMessageFunc set_message);

Performs tip convolution (dilation) algorithm published by Villarrubia. This function converts all fields into form requested by "morph_lib.c" library, that is almost identical with original Villarubia's library.

Parameters

tip

Tip data.

 

surface

Surface data.

 

result

Data field where to store dilated surface to.

 

set_fraction

Function that sets fraction to output (or NULL).

 

set_message

Function that sets message to output (or NULL).

 

Returns

Dilated surface data, i.e. result , on success. May return NULL if aborted.


gwy_tip_erosion ()

GwyDataField *
gwy_tip_erosion (GwyDataField *tip,
                 GwyDataField *surface,
                 GwyDataField *result,
                 GwySetFractionFunc set_fraction,
                 GwySetMessageFunc set_message);

Performs surface reconstruction (erosion) algorithm published by Villarrubia. This function converts all fields into form requested by "morph_lib.c" library, that is almost identical with original Villarubia's library.

Parameters

tip

Tip data.

 

surface

Surface to be eroded.

 

result

Data field where to store dilated surface to.

 

set_fraction

Function that sets fraction to output (or NULL).

 

set_message

Function that sets message to output (or NULL).

 

Returns

Reconstructed (eroded) surface, i.e. result , on success. May return NULL if aborted.


gwy_tip_cmap ()

GwyDataField *
gwy_tip_cmap (GwyDataField *tip,
              GwyDataField *surface,
              GwyDataField *result,
              GwySetFractionFunc set_fraction,
              GwySetMessageFunc set_message);

Performs certainty map algorithm published by Villarrubia. This function converts all fields into form requested by "morph_lib.c" library, that is almost identical with original Villarubia's library. Result certainty map can be used as a mask of points where tip did not directly touch the surface.

Parameters

tip

Tip data.

 

surface

Surface data.

 

result

Data field to store ceratainty map data to.

 

set_fraction

Function that sets fraction to output (or NULL).

 

set_message

Function that sets message to output (of NULL).

 

Returns

Certainty map, i.e. result , on success. May return NULL if aborted.


gwy_tip_estimate_partial ()

GwyDataField *
gwy_tip_estimate_partial (GwyDataField *tip,
                          GwyDataField *surface,
                          gdouble threshold,
                          gboolean use_edges,
                          gint *count,
                          GwySetFractionFunc set_fraction,
                          GwySetMessageFunc set_message);

Performs partial blind estimation algorithm published by Villarrubia. This function converts all fields into form requested by "morph_lib.c" library, that is almost identical with original Villarubia's library. Note that the threshold value must be chosen sufficently high value to supress small fluctulations due to noise (that would lead to very sharp tip) but sufficiently low value to put algorithm at work. A value similar to 1/10000 of surface range can be good. Otherwise we recommend to start with zero threshold and increase it slowly to observe changes and choose right value.

Parameters

tip

Tip data to be refined (allocated).

 

surface

Surface data.

 

threshold

Threshold for noise supression.

 

use_edges

Whether use also edges of image.

 

count

Where to store the number of places that produced refinements to.

 

set_fraction

Function that sets fraction to output (or NULL).

 

set_message

Function that sets message to output (or NULL).

 

Returns

Estimated tip. May return NULL if aborted.


gwy_tip_estimate_full ()

GwyDataField *
gwy_tip_estimate_full (GwyDataField *tip,
                       GwyDataField *surface,
                       gdouble threshold,
                       gboolean use_edges,
                       gint *count,
                       GwySetFractionFunc set_fraction,
                       GwySetMessageFunc set_message);

Performs full blind estimation algorithm published by Villarrubia. This function converts all fields into form requested by "morph_lib.c" library, that is almost identical with original Villarubia's library. Note that the threshold value must be chosen sufficently high value to supress small fluctulations due to noise (that would lead to very sharp tip) but sufficiently low value to put algorithm at work. A value similar to 1/10000 of surface range can be good. Otherwise we recommend to start with zero threshold and increase it slowly to observe changes and choose right value.

Parameters

tip

Tip data to be refined (allocated).

 

surface

Surface data.

 

threshold

Threshold for noise supression.

 

use_edges

Whether use also edges of image.

 

count

Where to store the number of places that produced refinements to.

 

set_fraction

Function that sets fraction to output (or NULL).

 

set_message

Function that sets message to output (or NULL).

 

Returns

Estimated tip. May return NULL if aborted.

Types and Values

struct GwyTipModelPreset

struct GwyTipModelPreset {
    const gchar *tip_name;
    const gchar *group_name;
    GwyTipModelFunc func;
    GwyTipGuessFunc guess;
    gint nparams;
};