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elxAffineLogStackTransform.h
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1 /*=========================================================================
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3  * Copyright UMC Utrecht and contributors
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5  * Licensed under the Apache License, Version 2.0 (the "License");
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13  * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
14  * See the License for the specific language governing permissions and
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17  *=========================================================================*/
18 
19 #ifndef ELXAFFINELOGSTACKTRANSFORM_H
20 #define ELXAFFINELOGSTACKTRANSFORM_H
21 
24 #include "itkStackTransform.h"
25 #include "../AffineLogTransform/itkAffineLogTransform.h"
26 
27 #include "elxIncludes.h"
28 
29 namespace elastix
30 {
31 
40 template< class TElastix >
43  typename elx::TransformBase< TElastix >::CoordRepType,
44  elx::TransformBase< TElastix >::FixedImageDimension >,
45  public elx::TransformBase< TElastix >
46 {
47 public:
48 
55  typedef itk::SmartPointer< Self > Pointer;
56  typedef itk::SmartPointer< const Self > ConstPointer;
57 
59  itkNewMacro( Self );
60 
63 
68  elxClassNameMacro( "AffineLogStackTransform" );
69 
71  itkStaticConstMacro( SpaceDimension, unsigned int, Superclass2::FixedImageDimension );
72  itkStaticConstMacro( ReducedSpaceDimension, unsigned int, Superclass2::FixedImageDimension - 1 );
73 
75  itkGetStaticConstMacro( SpaceDimension ) > AffineLogTransformType;
78 
81  itkGetStaticConstMacro( ReducedSpaceDimension ) > ReducedDimensionAffineLogTransformBaseType;
83 
86 
88  typedef itk::StackTransform<
90  itkGetStaticConstMacro( SpaceDimension ),
91  itkGetStaticConstMacro( SpaceDimension ) > AffineLogStackTransformType;
93 
97 
110 
112  typedef float PixelType;
113  typedef itk::Image< PixelType,
114  itkGetStaticConstMacro( ReducedSpaceDimension ) > ReducedDimensionImageType;
115  typedef itk::ImageRegion<
116  itkGetStaticConstMacro( ReducedSpaceDimension ) > ReducedDimensionRegionType;
117  typedef typename ReducedDimensionImageType::PointType ReducedDimensionPointType;
118  typedef typename ReducedDimensionImageType::SizeType ReducedDimensionSizeType;
119  typedef typename ReducedDimensionRegionType::IndexType ReducedDimensionIndexType;
120  typedef typename ReducedDimensionImageType::SpacingType ReducedDimensionSpacingType;
121  typedef typename ReducedDimensionImageType::DirectionType ReducedDimensionDirectionType;
122  typedef typename ReducedDimensionImageType::PointType ReducedDimensionOriginType;
123 
126 
128  typedef typename FixedImageType::IndexType IndexType;
129  typedef typename FixedImageType::SizeType SizeType;
130  typedef typename FixedImageType::PointType PointType;
131  typedef typename FixedImageType::SpacingType SpacingType;
132  typedef typename FixedImageType::RegionType RegionType;
133  typedef typename FixedImageType::DirectionType DirectionType;
134  typedef typename itk::ContinuousIndex< CoordRepType, ReducedSpaceDimension > ReducedDimensionContinuousIndexType;
135  typedef typename itk::ContinuousIndex< CoordRepType, SpaceDimension > ContinuousIndexType;
136 
139  int BeforeAll( void ) override;
140 
146  void BeforeRegistration( void ) override;
147 
149  virtual void InitializeTransform( void );
150 
158  virtual void SetScales( void );
159 
161  void ReadFromFile( void ) override;
162 
164  void WriteToFile( const ParametersType & param ) const override;
165 
166 protected:
167 
170 
173 
179  virtual bool ReadCenterOfRotationPoint( ReducedDimensionInputPointType & rotationPoint ) const;
180 
181 private:
182 
184  AffineLogStackTransform( const Self & ); // purposely not implemented
185  void operator=( const Self & ); // purposely not implemented
186 
189 
192 
196 
199 
200 };
201 
202 } // end namespace elastix
203 
204 #ifndef ITK_MANUAL_INSTANTIATION
205 #include "elxAffineLogStackTransform.hxx"
206 #endif
207 
208 #endif // ELXAFFINELOGSTACKTRANSFORM_H
An affine log transform based on the itkStackTransform.
itk::Image< PixelType, itkGetStaticConstMacro(ReducedSpaceDimension) > ReducedDimensionImageType
AffineLogTransformType::InputPointType InputPointType
itk::SmartPointer< const Self > ConstPointer
Superclass2::MovingImageType MovingImageType
itk::ImageRegion< itkGetStaticConstMacro(ReducedSpaceDimension) > ReducedDimensionRegionType
ReducedDimensionImageType::PointType ReducedDimensionOriginType
AffineLogTransformType::Pointer AffineLogTransformPointer
Superclass1::NumberOfParametersType NumberOfParametersType
Superclass1::ParametersType ParametersType
itk::AffineLogTransform< typename elx::TransformBase< TElastix >::CoordRepType, itkGetStaticConstMacro(SpaceDimension) > AffineLogTransformType
virtual void InitializeTransform(void)
Superclass2::FixedImageType FixedImageType
void BeforeRegistration(void) override
ReducedDimensionAffineLogTransformBaseType::Pointer ReducedDimensionAffineLogTransformBasePointer
Superclass2::RegistrationType RegistrationType
itk::AffineLogTransform< typename elx::TransformBase< TElastix >::CoordRepType, itkGetStaticConstMacro(ReducedSpaceDimension) > ReducedDimensionAffineLogTransformBaseType
void WriteToFile(const ParametersType &param) const override
Superclass2::CombinationTransformType CombinationTransformType
itk::AdvancedCombinationTransform< typename elx::TransformBase< TElastix >::CoordRepType, elx::TransformBase< TElastix >::FixedImageDimension > Superclass1
itkStaticConstMacro(SpaceDimension, unsigned int, Superclass2::FixedImageDimension)
virtual bool ReadCenterOfRotationPoint(ReducedDimensionInputPointType &rotationPoint) const
unsigned int InitializeAffineLogTransform()
ReducedDimensionImageType::DirectionType ReducedDimensionDirectionType
itk::ContinuousIndex< CoordRepType, ReducedSpaceDimension > ReducedDimensionContinuousIndexType
ReducedDimensionImageType::SpacingType ReducedDimensionSpacingType
FixedImageType::DirectionType DirectionType
itk::ContinuousIndex< CoordRepType, SpaceDimension > ContinuousIndexType
itk::StackTransform< typename elx::TransformBase< TElastix >::CoordRepType, itkGetStaticConstMacro(SpaceDimension), itkGetStaticConstMacro(SpaceDimension) > AffineLogStackTransformType
ReducedDimensionImageType::SizeType ReducedDimensionSizeType
elxClassNameMacro("AffineLogStackTransform")
elx::TransformBase< TElastix > Superclass2
ReducedDimensionAffineLogTransformBasePointer m_AffineLogDummySubTransform
Superclass2::RegistrationPointer RegistrationPointer
ReducedDimensionRegionType::IndexType ReducedDimensionIndexType
ReducedDimensionImageType::PointType ReducedDimensionPointType
void ReadFromFile(void) override
Superclass2::ElastixPointer ElastixPointer
ReducedDimensionAffineLogTransformBaseType::InputPointType ReducedDimensionInputPointType
Superclass2::ConfigurationPointer ConfigurationPointer
AffineLogStackTransformType::Pointer AffineLogStackTransformPointer
AffineLogStackTransformPointer m_AffineLogStackTransform
itkStaticConstMacro(ReducedSpaceDimension, unsigned int, Superclass2::FixedImageDimension - 1)
ReducedDimensionAffineLogTransformBaseType::OutputVectorType ReducedDimensionOutputVectorType
Superclass2::ConfigurationType ConfigurationType
A class that deals with user given parameters and command line arguments.
This class is the elastix base class for all Transforms.
Configuration::Pointer ConfigurationPointer
ElastixType::FixedImageType FixedImageType
itk::WeakPointer< ElastixType > ElastixPointer
OptimizerType::ScalesType ScalesType
RegistrationType * RegistrationPointer
ElastixType::MovingImageType MovingImageType
ElastixType::CoordRepType CoordRepType
ElastixType::RegistrationBaseType RegistrationType
This class combines two transforms: an 'initial transform' with a 'current transform'.
Superclass::NumberOfParametersType NumberOfParametersType
Transform maps points, vectors and covariant vectors from an input space to an output space.
Superclass::ParametersType ParametersType
Superclass::OutputVectorType OutputVectorType
SmartPointer< Self > Pointer
Superclass::InputPointType InputPointType
Implements stack of transforms: one for every last dimension index.
SmartPointer< Self > Pointer


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