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elxEulerTransform.h
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1 /*=========================================================================
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3  * Copyright UMC Utrecht and contributors
4  *
5  * Licensed under the Apache License, Version 2.0 (the "License");
6  * you may not use this file except in compliance with the License.
7  * You may obtain a copy of the License at
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9  * http://www.apache.org/licenses/LICENSE-2.0.txt
10  *
11  * Unless required by applicable law or agreed to in writing, software
12  * distributed under the License is distributed on an "AS IS" BASIS,
13  * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
14  * See the License for the specific language governing permissions and
15  * limitations under the License.
16  *
17  *=========================================================================*/
18 #ifndef __elxEulerTransform_H__
19 #define __elxEulerTransform_H__
20 
21 #include "elxIncludes.h" // include first to avoid MSVS warning
23 #include "itkEulerTransform.h"
24 #include "itkCenteredTransformInitializer.h"
25 
26 namespace elastix
27 {
28 
73 template< class TElastix >
76  typename elx::TransformBase< TElastix >::CoordRepType,
77  elx::TransformBase< TElastix >::FixedImageDimension >,
78  public elx::TransformBase< TElastix >
79 {
80 public:
81 
84 
88 
90 
93  typedef itk::EulerTransform<
96 
97  typedef itk::SmartPointer< Self > Pointer;
98  typedef itk::SmartPointer< const Self > ConstPointer;
99 
101  itkNewMacro( Self );
102 
104  //itkTypeMacro( EulerTransformElastix, EulerTransform );
106 
111  elxClassNameMacro( "EulerTransform" );
112 
114  itkStaticConstMacro( SpaceDimension, unsigned int, Superclass2::FixedImageDimension );
115 
123 
132 
135 
149 
151  typedef typename FixedImageType::IndexType IndexType;
152  typedef typename IndexType::IndexValueType IndexValueType;
153  typedef typename FixedImageType::SizeType SizeType;
154  typedef typename FixedImageType::PointType PointType;
155  typedef typename FixedImageType::SpacingType SpacingType;
156  typedef typename FixedImageType::RegionType RegionType;
157  typedef typename FixedImageType::DirectionType DirectionType;
158 
159  typedef itk::CenteredTransformInitializer<
161  typedef typename TransformInitializerType::Pointer TransformInitializerPointer;
162 
165 
170  void BeforeRegistration( void ) override;
171 
187  virtual void InitializeTransform( void );
188 
196  virtual void SetScales( void );
197 
202  void ReadFromFile( void ) override;
203 
207  void WriteToFile( const ParametersType & param ) const override;
208 
213  const ParametersType & param, ParameterMapType * paramsMap ) const override;
214 
215 protected:
216 
221 
227  virtual bool ReadCenterOfRotationPoint( InputPointType & rotationPoint ) const;
228 
229 private:
230 
232  EulerTransformElastix( const Self & ); // purposely not implemented
234  void operator=( const Self & ); // purposely not implemented
235 
237 
238 };
239 
240 } // end namespace elastix
241 
242 #ifndef ITK_MANUAL_INSTANTIATION
243 #include "elxEulerTransform.hxx"
244 #endif
245 
246 #endif // end #ifndef __elxEulerTransform_H__
A class that deals with user given parameters and command line arguments.
A transform based on the itk EulerTransforms.
void WriteToFile(const ParametersType &param) const override
IndexType::IndexValueType IndexValueType
EulerTransformType::Pointer EulerTransformPointer
Superclass1::OutputVectorType OutputVectorType
Superclass1::JacobianType JacobianType
Superclass2::ElastixType ElastixType
FixedImageType::PointType PointType
Superclass2::ITKBaseType ITKBaseType
Superclass2::FixedImageType FixedImageType
void ReadFromFile(void) override
EulerTransformPointer m_EulerTransform
FixedImageType::RegionType RegionType
Superclass1::ScalarType ScalarType
Superclass2::ScalesType ScalesType
Superclass1::InputVnlVectorType InputVnlVectorType
Superclass1::NumberOfParametersType NumberOfParametersType
Superclass1::ParametersType ParametersType
elxClassNameMacro("EulerTransform")
EulerTransformType::OffsetType OffsetType
Superclass1::InputVectorType InputVectorType
FixedImageType::DirectionType DirectionType
Superclass1::OutputVnlVectorType OutputVnlVectorType
virtual void SetScales(void)
Superclass2::ConfigurationType ConfigurationType
void CreateTransformParametersMap(const ParametersType &param, ParameterMapType *paramsMap) const override
Superclass2::ElastixPointer ElastixPointer
Superclass2::ParameterMapType ParameterMapType
FixedImageType::SpacingType SpacingType
itk::EulerTransform< typename elx::TransformBase< TElastix >::CoordRepType, elx::TransformBase< TElastix >::FixedImageDimension > EulerTransformType
FixedImageType::SizeType SizeType
Superclass2::MovingImageType MovingImageType
Superclass1::OutputCovariantVectorType OutputCovariantVectorType
itk::AdvancedCombinationTransform< typename elx::TransformBase< TElastix >::CoordRepType, elx::TransformBase< TElastix >::FixedImageDimension > Superclass1
itk::CenteredTransformInitializer< EulerTransformType, FixedImageType, MovingImageType > TransformInitializerType
itk::SmartPointer< Self > Pointer
virtual bool ReadCenterOfRotationPoint(InputPointType &rotationPoint) const
Superclass1::OutputPointType OutputPointType
Superclass1::InputPointType InputPointType
void operator=(const Self &)
Superclass2::ConfigurationPointer ConfigurationPointer
Superclass1::InputCovariantVectorType InputCovariantVectorType
Superclass2::CombinationTransformType CombinationTransformType
elx::TransformBase< TElastix > Superclass2
void BeforeRegistration(void) override
itkStaticConstMacro(SpaceDimension, unsigned int, Superclass2::FixedImageDimension)
Superclass2::RegistrationPointer RegistrationPointer
TransformInitializerType::Pointer TransformInitializerPointer
Superclass2::CoordRepType CoordRepType
virtual void InitializeTransform(void)
Superclass2::RegistrationType RegistrationType
itk::SmartPointer< const Self > ConstPointer
FixedImageType::IndexType IndexType
This class is the elastix base class for all Transforms.
Configuration::Pointer ConfigurationPointer
ElastixType::FixedImageType FixedImageType
ElastixType::ParameterMapType ParameterMapType
itk::WeakPointer< ElastixType > ElastixPointer
OptimizerType::ScalesType ScalesType
RegistrationType * RegistrationPointer
ElastixType::MovingImageType MovingImageType
ElastixType::CoordRepType CoordRepType
ElastixType::RegistrationBaseType RegistrationType
This class combines two transforms: an 'initial transform' with a 'current transform'.
Superclass::InputCovariantVectorType InputCovariantVectorType
Superclass::OutputVnlVectorType OutputVnlVectorType
Superclass::OutputCovariantVectorType OutputCovariantVectorType
Superclass::NumberOfParametersType NumberOfParametersType
Superclass::InputVnlVectorType InputVnlVectorType
Transform maps points, vectors and covariant vectors from an input space to an output space.
Superclass::ParametersType ParametersType
Superclass::InputPointType InputPointType
This class combines the Euler2DTransform with the Euler3DTransform.
Superclass::OffsetType OffsetType
SmartPointer< Self > Pointer


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