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elxSimilarityTransform.h
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1 /*=========================================================================
2  *
3  * Copyright UMC Utrecht and contributors
4  *
5  * Licensed under the Apache License, Version 2.0 (the "License");
6  * you may not use this file except in compliance with the License.
7  * You may obtain a copy of the License at
8  *
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10  *
11  * Unless required by applicable law or agreed to in writing, software
12  * distributed under the License is distributed on an "AS IS" BASIS,
13  * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
14  * See the License for the specific language governing permissions and
15  * limitations under the License.
16  *
17  *=========================================================================*/
18 #ifndef __elxSimilarityTransform_H__
19 #define __elxSimilarityTransform_H__
20 
21 #include "elxIncludes.h" // include first to avoid MSVS warning
22 #include "itkSimilarityTransform.h"
23 #include "itkCenteredTransformInitializer.h"
24 
25 namespace elastix
26 {
27 
78 template< class TElastix >
81  typename elx::TransformBase< TElastix >::CoordRepType,
82  elx::TransformBase< TElastix >::FixedImageDimension >,
83  public elx::TransformBase< TElastix >
84 {
85 public:
86 
93  typedef itk::SmartPointer< Self > Pointer;
94  typedef itk::SmartPointer< const Self > ConstPointer;
95 
98  typedef itk::SimilarityTransform<
101 
103  itkNewMacro( Self );
104 
107 
112  elxClassNameMacro( "SimilarityTransform" );
113 
115  itkStaticConstMacro( SpaceDimension, unsigned int, Superclass2::FixedImageDimension );
116 
124 
133 
135  typedef typename SimilarityTransformType::Pointer SimilarityTransformPointer;
136  typedef typename SimilarityTransformType::OffsetType OffsetType;
137 
150 
152  typedef typename FixedImageType::IndexType IndexType;
153  typedef typename IndexType::IndexValueType IndexValueType;
154  typedef typename FixedImageType::SizeType SizeType;
155  typedef typename FixedImageType::PointType PointType;
156  typedef typename FixedImageType::SpacingType SpacingType;
157  typedef typename FixedImageType::RegionType RegionType;
158  typedef typename FixedImageType::DirectionType DirectionType;
159 
160  typedef itk::CenteredTransformInitializer<
162  typedef typename TransformInitializerType::Pointer TransformInitializerPointer;
163 
166 
171  virtual void BeforeRegistration( void );
172 
188  virtual void InitializeTransform( void );
189 
197  virtual void SetScales( void );
198 
203  virtual void ReadFromFile( void );
204 
208  virtual void WriteToFile( const ParametersType & param ) const;
209 
210 protected:
211 
216 
222  virtual bool ReadCenterOfRotationIndex( InputPointType & rotationPoint ) const;
223 
229  virtual bool ReadCenterOfRotationPoint( InputPointType & rotationPoint ) const;
230 
231 private:
232 
234  SimilarityTransformElastix( const Self & ); // purposely not implemented
236  void operator=( const Self & ); // purposely not implemented
237 
239 
240 };
241 
242 } // end namespace elastix
243 
244 #ifndef ITK_MANUAL_INSTANTIATION
245 #include "elxSimilarityTransform.hxx"
246 #endif
247 
248 #endif // end #ifndef __elxSimilarityTransform_H__
itk::AdvancedCombinationTransform::JacobianType
Superclass::JacobianType JacobianType
Definition: itkAdvancedCombinationTransform.h:84
elastix::SimilarityTransformElastix::ScalarType
Superclass1::ScalarType ScalarType
Definition: elxSimilarityTransform.h:120
elastix::SimilarityTransformElastix::CoordRepType
Superclass2::CoordRepType CoordRepType
Definition: elxSimilarityTransform.h:145
elastix::SimilarityTransformElastix::RegionType
FixedImageType::RegionType RegionType
Definition: elxSimilarityTransform.h:157
itk::AdvancedCombinationTransform::OutputCovariantVectorType
Superclass::OutputCovariantVectorType OutputCovariantVectorType
Definition: itkAdvancedCombinationTransform.h:88
elastix::SimilarityTransformElastix::SizeType
FixedImageType::SizeType SizeType
Definition: elxSimilarityTransform.h:154
elastix::TransformBase::FixedImageType
ElastixType::FixedImageType FixedImageType
Definition: elxTransformBase.h:157
elastix::SimilarityTransformElastix::PointType
FixedImageType::PointType PointType
Definition: elxSimilarityTransform.h:155
elastix::SimilarityTransformElastix::TransformInitializerType
itk::CenteredTransformInitializer< SimilarityTransformType, FixedImageType, MovingImageType > TransformInitializerType
Definition: elxSimilarityTransform.h:161
elastix::TransformBase::CoordRepType
ElastixType::CoordRepType CoordRepType
Definition: elxTransformBase.h:156
elastix::TransformBase::RegistrationPointer
Superclass::RegistrationPointer RegistrationPointer
Definition: elxTransformBase.h:153
elastix::SimilarityTransformElastix::CombinationTransformType
Superclass2::CombinationTransformType CombinationTransformType
Definition: elxSimilarityTransform.h:149
elastix::SimilarityTransformElastix
A transform based on the itk SimilarityTransforms.
Definition: elxSimilarityTransform.h:84
elastix::SimilarityTransformElastix::DirectionType
FixedImageType::DirectionType DirectionType
Definition: elxSimilarityTransform.h:158
elastix::SimilarityTransformElastix::itkStaticConstMacro
itkStaticConstMacro(SpaceDimension, unsigned int, Superclass2::FixedImageDimension)
elastix::SimilarityTransformElastix::SetScales
virtual void SetScales(void)
elastix::SimilarityTransformElastix::SpacingType
FixedImageType::SpacingType SpacingType
Definition: elxSimilarityTransform.h:156
elastix::SimilarityTransformElastix::IndexValueType
IndexType::IndexValueType IndexValueType
Definition: elxSimilarityTransform.h:153
itk::AdvancedCombinationTransform::OutputVectorType
Superclass::OutputVectorType OutputVectorType
Definition: itkAdvancedCombinationTransform.h:86
itk::AdvancedCombinationTransform::ParametersType
Superclass::ParametersType ParametersType
Definition: itkAdvancedCombinationTransform.h:79
itk::AdvancedCombinationTransform
This class combines two transforms: an 'initial transform' with a 'current transform'.
Definition: itkAdvancedCombinationTransform.h:58
elastix::TransformBase::MovingImageType
ElastixType::MovingImageType MovingImageType
Definition: elxTransformBase.h:158
elastix::SimilarityTransformElastix::InputCovariantVectorType
Superclass1::InputCovariantVectorType InputCovariantVectorType
Definition: elxSimilarityTransform.h:129
elastix::SimilarityTransformElastix::SimilarityTransformElastix
SimilarityTransformElastix()
itk::AdvancedCombinationTransform::ScalarType
Superclass::ScalarType ScalarType
Definition: itkAdvancedCombinationTransform.h:78
elastix::SimilarityTransformElastix::NumberOfParametersType
Superclass1::NumberOfParametersType NumberOfParametersType
Definition: elxSimilarityTransform.h:122
elastix::TransformBase::ElastixType
Superclass::ElastixType ElastixType
Definition: elxTransformBase.h:141
elastix::SimilarityTransformElastix::InputPointType
Superclass1::InputPointType InputPointType
Definition: elxSimilarityTransform.h:125
elastix::SimilarityTransformElastix::ConfigurationType
Superclass2::ConfigurationType ConfigurationType
Definition: elxSimilarityTransform.h:141
itk::AdvancedCombinationTransform::OutputPointType
Superclass::OutputPointType OutputPointType
Definition: itkAdvancedCombinationTransform.h:92
itk::AdvancedTransform
Transform maps points, vectors and covariant vectors from an input space to an output space.
Definition: itkAdvancedTransform.h:87
elastix::SimilarityTransformElastix::RegistrationType
Superclass2::RegistrationType RegistrationType
Definition: elxSimilarityTransform.h:143
elastix::SimilarityTransformElastix::OutputPointType
Superclass1::OutputPointType OutputPointType
Definition: elxSimilarityTransform.h:126
elastix::SimilarityTransformElastix::InputVnlVectorType
Superclass1::InputVnlVectorType InputVnlVectorType
Definition: elxSimilarityTransform.h:131
elastix::TransformBase::ElastixPointer
Superclass::ElastixPointer ElastixPointer
Definition: elxTransformBase.h:145
itk::AdvancedCombinationTransform::OutputVnlVectorType
Superclass::OutputVnlVectorType OutputVnlVectorType
Definition: itkAdvancedCombinationTransform.h:90
itk::AdvancedCombinationTransform::InputVectorType
Superclass::InputVectorType InputVectorType
Definition: itkAdvancedCombinationTransform.h:85
elastix::SimilarityTransformElastix::InitializeTransform
virtual void InitializeTransform(void)
elastix::SimilarityTransformElastix::InputVectorType
Superclass1::InputVectorType InputVectorType
Definition: elxSimilarityTransform.h:127
elastix::SimilarityTransformElastix::operator=
void operator=(const Self &)
elastix::SimilarityTransformElastix::WriteToFile
virtual void WriteToFile(const ParametersType &param) const
elastix::SimilarityTransformElastix::ParametersType
Superclass1::ParametersType ParametersType
Definition: elxSimilarityTransform.h:121
elastix::SimilarityTransformElastix::~SimilarityTransformElastix
virtual ~SimilarityTransformElastix()
Definition: elxSimilarityTransform.h:215
elastix::SimilarityTransformElastix::TransformInitializerPointer
TransformInitializerType::Pointer TransformInitializerPointer
Definition: elxSimilarityTransform.h:162
elastix::SimilarityTransformElastix::ElastixPointer
Superclass2::ElastixPointer ElastixPointer
Definition: elxSimilarityTransform.h:140
elastix::SimilarityTransformElastix::SimilarityTransformPointer
SimilarityTransformType::Pointer SimilarityTransformPointer
Definition: elxSimilarityTransform.h:135
elxIncludes.h
elastix::SimilarityTransformElastix::BeforeRegistration
virtual void BeforeRegistration(void)
elastix::SimilarityTransformElastix::JacobianType
Superclass1::JacobianType JacobianType
Definition: elxSimilarityTransform.h:123
itk::AdvancedCombinationTransform::InputVnlVectorType
Superclass::InputVnlVectorType InputVnlVectorType
Definition: itkAdvancedCombinationTransform.h:89
itk::AdvancedCombinationTransform::NumberOfParametersType
Superclass::NumberOfParametersType NumberOfParametersType
Definition: itkAdvancedCombinationTransform.h:82
elastix::SimilarityTransformElastix::m_SimilarityTransform
SimilarityTransformPointer m_SimilarityTransform
Definition: elxSimilarityTransform.h:238
elastix::SimilarityTransformElastix::elxClassNameMacro
elxClassNameMacro("SimilarityTransform")
elastix::SimilarityTransformElastix::Superclass1
itk::AdvancedCombinationTransform< typename elx::TransformBase< TElastix >::CoordRepType, elx::TransformBase< TElastix >::FixedImageDimension > Superclass1
Definition: elxSimilarityTransform.h:91
elastix::SimilarityTransformElastix::OutputVnlVectorType
Superclass1::OutputVnlVectorType OutputVnlVectorType
Definition: elxSimilarityTransform.h:132
elastix::SimilarityTransformElastix::Superclass2
elx::TransformBase< TElastix > Superclass2
Definition: elxSimilarityTransform.h:92
itk::AdvancedCombinationTransform::InputPointType
Superclass::InputPointType InputPointType
Definition: itkAdvancedCombinationTransform.h:91
elastix::SimilarityTransformElastix::OutputVectorType
Superclass1::OutputVectorType OutputVectorType
Definition: elxSimilarityTransform.h:128
elastix::SimilarityTransformElastix::SimilarityTransformType
itk::SimilarityTransform< typename elx::TransformBase< TElastix >::CoordRepType, elx::TransformBase< TElastix >::FixedImageDimension > SimilarityTransformType
Definition: elxSimilarityTransform.h:100
elastix::SimilarityTransformElastix::ElastixType
Superclass2::ElastixType ElastixType
Definition: elxSimilarityTransform.h:139
elastix::SimilarityTransformElastix::Pointer
itk::SmartPointer< Self > Pointer
Definition: elxSimilarityTransform.h:93
elastix::TransformBase::ConfigurationType
Superclass::ConfigurationType ConfigurationType
Definition: elxTransformBase.h:146
elastix::SimilarityTransformElastix::OutputCovariantVectorType
Superclass1::OutputCovariantVectorType OutputCovariantVectorType
Definition: elxSimilarityTransform.h:130
elastix::SimilarityTransformElastix::ConfigurationPointer
Superclass2::ConfigurationPointer ConfigurationPointer
Definition: elxSimilarityTransform.h:142
elastix::TransformBase::ScalesType
OptimizerType::ScalesType ScalesType
Definition: elxTransformBase.h:204
elastix::SimilarityTransformElastix::SimilarityTransformElastix
SimilarityTransformElastix(const Self &)
elastix::SimilarityTransformElastix::ReadFromFile
virtual void ReadFromFile(void)
itk::AdvancedCombinationTransform::InputCovariantVectorType
Superclass::InputCovariantVectorType InputCovariantVectorType
Definition: itkAdvancedCombinationTransform.h:87
elastix::SimilarityTransformElastix::ITKBaseType
Superclass2::ITKBaseType ITKBaseType
Definition: elxSimilarityTransform.h:148
elastix::TransformBase::ConfigurationPointer
Superclass::ConfigurationPointer ConfigurationPointer
Definition: elxTransformBase.h:147
elastix::SimilarityTransformElastix::ScalesType
Superclass2::ScalesType ScalesType
Definition: elxSimilarityTransform.h:165
elastix::SimilarityTransformElastix::MovingImageType
Superclass2::MovingImageType MovingImageType
Definition: elxSimilarityTransform.h:147
elastix::SimilarityTransformElastix::ReadCenterOfRotationPoint
virtual bool ReadCenterOfRotationPoint(InputPointType &rotationPoint) const
elastix::SimilarityTransformElastix::FixedImageType
Superclass2::FixedImageType FixedImageType
Definition: elxSimilarityTransform.h:146
elastix::TransformBase
This class is the elastix base class for all Transforms.
Definition: elxTransformBase.h:133
elastix
Definition: elxFixedGenericPyramid.h:25
elastix::SimilarityTransformElastix::RegistrationPointer
Superclass2::RegistrationPointer RegistrationPointer
Definition: elxSimilarityTransform.h:144
elastix::SimilarityTransformElastix::Self
SimilarityTransformElastix Self
Definition: elxSimilarityTransform.h:88
elastix::SimilarityTransformElastix::OffsetType
SimilarityTransformType::OffsetType OffsetType
Definition: elxSimilarityTransform.h:136
elastix::SimilarityTransformElastix::ReadCenterOfRotationIndex
virtual bool ReadCenterOfRotationIndex(InputPointType &rotationPoint) const
elastix::SimilarityTransformElastix::ConstPointer
itk::SmartPointer< const Self > ConstPointer
Definition: elxSimilarityTransform.h:94
elastix::SimilarityTransformElastix::IndexType
FixedImageType::IndexType IndexType
Definition: elxSimilarityTransform.h:152
elastix::TransformBase::RegistrationType
Superclass::RegistrationType RegistrationType
Definition: elxTransformBase.h:152


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