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elxAdvancedAffineTransform.h
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1 /*=========================================================================
2  *
3  * Copyright UMC Utrecht and contributors
4  *
5  * Licensed under the Apache License, Version 2.0 (the "License");
6  * you may not use this file except in compliance with the License.
7  * You may obtain a copy of the License at
8  *
9  * http://www.apache.org/licenses/LICENSE-2.0.txt
10  *
11  * Unless required by applicable law or agreed to in writing, software
12  * distributed under the License is distributed on an "AS IS" BASIS,
13  * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
14  * See the License for the specific language governing permissions and
15  * limitations under the License.
16  *
17  *=========================================================================*/
18 #ifndef __elxAdvancedAffineTransform_H_
19 #define __elxAdvancedAffineTransform_H_
20 
21 #include "elxIncludes.h" // include first to avoid MSVS warning
25 
26 namespace elastix
27 {
28 
76 template< class TElastix >
79  typename elx::TransformBase< TElastix >::CoordRepType,
80  elx::TransformBase< TElastix >::FixedImageDimension >,
81  public elx::TransformBase< TElastix >
82 {
83 public:
84 
91  typedef itk::SmartPointer< Self > Pointer;
92  typedef itk::SmartPointer< const Self > ConstPointer;
93 
100 
102  itkNewMacro( Self );
103 
106 
111  elxClassNameMacro( "AffineTransform" );
112 
114  itkStaticConstMacro( SpaceDimension, unsigned int, Superclass2::FixedImageDimension );
115 
129 
143 
145  typedef typename FixedImageType::IndexType IndexType;
146  typedef typename IndexType::IndexValueType IndexValueType;
147  typedef typename FixedImageType::SizeType SizeType;
148  typedef typename FixedImageType::PointType PointType;
149  typedef typename FixedImageType::SpacingType SpacingType;
150  typedef typename FixedImageType::RegionType RegionType;
151  typedef typename FixedImageType::DirectionType DirectionType;
152 
153  //typedef CenteredTransformInitializer<
158 
161 
166  virtual void BeforeRegistration( void );
167 
183  virtual void InitializeTransform( void );
184 
192  virtual void SetScales( void );
193 
198  virtual void ReadFromFile( void );
199 
203  virtual void WriteToFile( const ParametersType & param ) const;
204 
209  const ParametersType & param, ParameterMapType * paramsMap ) const;
210 
211 protected:
212 
217 
223  virtual bool ReadCenterOfRotationIndex( InputPointType & rotationPoint ) const;
224 
230  virtual bool ReadCenterOfRotationPoint( InputPointType & rotationPoint ) const;
231 
232 private:
233 
235  AdvancedAffineTransformElastix( const Self & ); // purposely not implemented
237  void operator=( const Self & ); // purposely not implemented
238 
240 
241 };
242 
243 } // end namespace elastix
244 
245 #ifndef ITK_MANUAL_INSTANTIATION
246 #include "elxAdvancedAffineTransform.hxx"
247 #endif
248 
249 #endif // end #ifndef __elxAdvancedAffineTransform_H_
elastix::AdvancedAffineTransformElastix::FixedImageType
Superclass2::FixedImageType FixedImageType
Definition: elxAdvancedAffineTransform.h:139
itk::AdvancedCombinationTransform::JacobianType
Superclass::JacobianType JacobianType
Definition: itkAdvancedCombinationTransform.h:84
elastix::AdvancedAffineTransformElastix::RegionType
FixedImageType::RegionType RegionType
Definition: elxAdvancedAffineTransform.h:150
elastix::AdvancedAffineTransformElastix::itkStaticConstMacro
itkStaticConstMacro(SpaceDimension, unsigned int, Superclass2::FixedImageDimension)
elastix::AdvancedAffineTransformElastix::ConfigurationPointer
Superclass2::ConfigurationPointer ConfigurationPointer
Definition: elxAdvancedAffineTransform.h:135
elastix::AdvancedAffineTransformElastix::RegistrationType
Superclass2::RegistrationType RegistrationType
Definition: elxAdvancedAffineTransform.h:136
itk::AdvancedCombinationTransform::OutputCovariantVectorType
Superclass::OutputCovariantVectorType OutputCovariantVectorType
Definition: itkAdvancedCombinationTransform.h:88
elastix::AdvancedAffineTransformElastix::InputCovariantVectorType
Superclass1::InputCovariantVectorType InputCovariantVectorType
Definition: elxAdvancedAffineTransform.h:123
elastix::AdvancedAffineTransformElastix::WriteToFile
virtual void WriteToFile(const ParametersType &param) const
elastix::TransformBase::FixedImageType
ElastixType::FixedImageType FixedImageType
Definition: elxTransformBase.h:157
SmartPointer< Self >
elastix::TransformBase::CoordRepType
ElastixType::CoordRepType CoordRepType
Definition: elxTransformBase.h:156
elastix::AdvancedAffineTransformElastix::ReadFromFile
virtual void ReadFromFile(void)
elastix::TransformBase::RegistrationPointer
Superclass::RegistrationPointer RegistrationPointer
Definition: elxTransformBase.h:153
elastix::AdvancedAffineTransformElastix::OutputCovariantVectorType
Superclass1::OutputCovariantVectorType OutputCovariantVectorType
Definition: elxAdvancedAffineTransform.h:124
itkAdvancedCombinationTransform.h
elastix::AdvancedAffineTransformElastix::InputVnlVectorType
Superclass1::InputVnlVectorType InputVnlVectorType
Definition: elxAdvancedAffineTransform.h:125
elastix::AdvancedAffineTransformElastix::ConfigurationType
Superclass2::ConfigurationType ConfigurationType
Definition: elxAdvancedAffineTransform.h:134
itk::CenteredTransformInitializer2
CenteredTransformInitializer2 is a helper class intended to initialize the center of rotation and the...
Definition: itkCenteredTransformInitializer2.h:93
elastix::AdvancedAffineTransformElastix::InputPointType
Superclass1::InputPointType InputPointType
Definition: elxAdvancedAffineTransform.h:127
elastix::AdvancedAffineTransformElastix::OutputVnlVectorType
Superclass1::OutputVnlVectorType OutputVnlVectorType
Definition: elxAdvancedAffineTransform.h:126
itk::AdvancedMatrixOffsetTransformBase
Definition: itkAdvancedMatrixOffsetTransformBase.h:99
elastix::AdvancedAffineTransformElastix::BeforeRegistration
virtual void BeforeRegistration(void)
elastix::AdvancedAffineTransformElastix::OutputPointType
Superclass1::OutputPointType OutputPointType
Definition: elxAdvancedAffineTransform.h:128
elastix::AdvancedAffineTransformElastix::Superclass2
elx::TransformBase< TElastix > Superclass2
Definition: elxAdvancedAffineTransform.h:90
elastix::AdvancedAffineTransformElastix::ElastixType
Superclass2::ElastixType ElastixType
Definition: elxAdvancedAffineTransform.h:131
elastix::AdvancedAffineTransformElastix::ITKBaseType
Superclass2::ITKBaseType ITKBaseType
Definition: elxAdvancedAffineTransform.h:141
itk::AdvancedCombinationTransform::OutputVectorType
Superclass::OutputVectorType OutputVectorType
Definition: itkAdvancedCombinationTransform.h:86
elastix::AdvancedAffineTransformElastix::ReadCenterOfRotationPoint
virtual bool ReadCenterOfRotationPoint(InputPointType &rotationPoint) const
itk::AdvancedCombinationTransform::ParametersType
Superclass::ParametersType ParametersType
Definition: itkAdvancedCombinationTransform.h:79
itk::AdvancedCombinationTransform
This class combines two transforms: an 'initial transform' with a 'current transform'.
Definition: itkAdvancedCombinationTransform.h:58
elastix::AdvancedAffineTransformElastix::Superclass1
itk::AdvancedCombinationTransform< typename elx::TransformBase< TElastix >::CoordRepType, elx::TransformBase< TElastix >::FixedImageDimension > Superclass1
Definition: elxAdvancedAffineTransform.h:89
elastix::AdvancedAffineTransformElastix::AffineTransformType
itk::AdvancedMatrixOffsetTransformBase< typename elx::TransformBase< TElastix >::CoordRepType, elx::TransformBase< TElastix >::FixedImageDimension, elx::TransformBase< TElastix >::MovingImageDimension > AffineTransformType
Definition: elxAdvancedAffineTransform.h:99
elastix::TransformBase::MovingImageType
ElastixType::MovingImageType MovingImageType
Definition: elxTransformBase.h:158
elastix::AdvancedAffineTransformElastix::ReadCenterOfRotationIndex
virtual bool ReadCenterOfRotationIndex(InputPointType &rotationPoint) const
itk::AdvancedCombinationTransform::ScalarType
Superclass::ScalarType ScalarType
Definition: itkAdvancedCombinationTransform.h:78
elastix::AdvancedAffineTransformElastix::AdvancedAffineTransformElastix
AdvancedAffineTransformElastix()
elastix::AdvancedAffineTransformElastix::PointType
FixedImageType::PointType PointType
Definition: elxAdvancedAffineTransform.h:148
elastix::TransformBase::ElastixType
Superclass::ElastixType ElastixType
Definition: elxTransformBase.h:141
elastix::AdvancedAffineTransformElastix::CombinationTransformType
Superclass2::CombinationTransformType CombinationTransformType
Definition: elxAdvancedAffineTransform.h:142
elastix::AdvancedAffineTransformElastix::SetScales
virtual void SetScales(void)
elastix::AdvancedAffineTransformElastix::ScalesType
Superclass2::ScalesType ScalesType
Definition: elxAdvancedAffineTransform.h:160
elastix::AdvancedAffineTransformElastix::operator=
void operator=(const Self &)
elastix::AdvancedAffineTransformElastix::OutputVectorType
Superclass1::OutputVectorType OutputVectorType
Definition: elxAdvancedAffineTransform.h:122
itk::AdvancedCombinationTransform::OutputPointType
Superclass::OutputPointType OutputPointType
Definition: itkAdvancedCombinationTransform.h:92
itkCenteredTransformInitializer2.h
elastix::AdvancedAffineTransformElastix::IndexType
FixedImageType::IndexType IndexType
Definition: elxAdvancedAffineTransform.h:145
elastix::AdvancedAffineTransformElastix::m_AffineTransform
AffineTransformPointer m_AffineTransform
Definition: elxAdvancedAffineTransform.h:239
elastix::AdvancedAffineTransformElastix::ConstPointer
itk::SmartPointer< const Self > ConstPointer
Definition: elxAdvancedAffineTransform.h:92
elastix::AdvancedAffineTransformElastix::TransformInitializerType
itk::CenteredTransformInitializer2< AffineTransformType, FixedImageType, MovingImageType > TransformInitializerType
Definition: elxAdvancedAffineTransform.h:155
itk::AdvancedTransform
Transform maps points, vectors and covariant vectors from an input space to an output space.
Definition: itkAdvancedTransform.h:87
elastix::AdvancedAffineTransformElastix::RegistrationPointer
Superclass2::RegistrationPointer RegistrationPointer
Definition: elxAdvancedAffineTransform.h:137
elastix::AdvancedAffineTransformElastix::CreateTransformParametersMap
virtual void CreateTransformParametersMap(const ParametersType &param, ParameterMapType *paramsMap) const
elastix::AdvancedAffineTransformElastix::InitializeTransform
virtual void InitializeTransform(void)
elastix::AdvancedAffineTransformElastix::AdvancedAffineTransformElastix
AdvancedAffineTransformElastix(const Self &)
elastix::TransformBase::ElastixPointer
Superclass::ElastixPointer ElastixPointer
Definition: elxTransformBase.h:145
itk::AdvancedCombinationTransform::OutputVnlVectorType
Superclass::OutputVnlVectorType OutputVnlVectorType
Definition: itkAdvancedCombinationTransform.h:90
itk::AdvancedCombinationTransform::InputVectorType
Superclass::InputVectorType InputVectorType
Definition: itkAdvancedCombinationTransform.h:85
elastix::AdvancedAffineTransformElastix::ParametersType
Superclass1::ParametersType ParametersType
Definition: elxAdvancedAffineTransform.h:118
elastix::AdvancedAffineTransformElastix::Pointer
itk::SmartPointer< Self > Pointer
Definition: elxAdvancedAffineTransform.h:91
elastix::AdvancedAffineTransformElastix::ElastixPointer
Superclass2::ElastixPointer ElastixPointer
Definition: elxAdvancedAffineTransform.h:132
elastix::AdvancedAffineTransformElastix::JacobianType
Superclass1::JacobianType JacobianType
Definition: elxAdvancedAffineTransform.h:120
elxIncludes.h
itk::AdvancedCombinationTransform::InputVnlVectorType
Superclass::InputVnlVectorType InputVnlVectorType
Definition: itkAdvancedCombinationTransform.h:89
elastix::AdvancedAffineTransformElastix::IndexValueType
IndexType::IndexValueType IndexValueType
Definition: elxAdvancedAffineTransform.h:146
itk::AdvancedCombinationTransform::NumberOfParametersType
Superclass::NumberOfParametersType NumberOfParametersType
Definition: itkAdvancedCombinationTransform.h:82
elastix::AdvancedAffineTransformElastix::MovingImageType
Superclass2::MovingImageType MovingImageType
Definition: elxAdvancedAffineTransform.h:140
elastix::AdvancedAffineTransformElastix::elxClassNameMacro
elxClassNameMacro("AffineTransform")
elastix::AdvancedAffineTransformElastix::TransformInitializerPointer
TransformInitializerType::Pointer TransformInitializerPointer
Definition: elxAdvancedAffineTransform.h:156
elastix::AdvancedAffineTransformElastix::SpacingType
FixedImageType::SpacingType SpacingType
Definition: elxAdvancedAffineTransform.h:149
elastix::AdvancedAffineTransformElastix::ScalarType
Superclass1::ScalarType ScalarType
Definition: elxAdvancedAffineTransform.h:117
itk::AdvancedCombinationTransform::InputPointType
Superclass::InputPointType InputPointType
Definition: itkAdvancedCombinationTransform.h:91
elastix::AdvancedAffineTransformElastix::Self
AdvancedAffineTransformElastix Self
Definition: elxAdvancedAffineTransform.h:86
elastix::TransformBase::ConfigurationType
Superclass::ConfigurationType ConfigurationType
Definition: elxTransformBase.h:146
elastix::AdvancedAffineTransformElastix
A transform based on the itk::AdvancedMatrixOffsetTransformBase.
Definition: elxAdvancedAffineTransform.h:82
elastix::AdvancedAffineTransformElastix::AffineTransformPointer
AffineTransformType::Pointer AffineTransformPointer
Definition: elxAdvancedAffineTransform.h:157
elastix::TransformBase::ScalesType
OptimizerType::ScalesType ScalesType
Definition: elxTransformBase.h:204
elastix::AdvancedAffineTransformElastix::SizeType
FixedImageType::SizeType SizeType
Definition: elxAdvancedAffineTransform.h:147
elastix::AdvancedAffineTransformElastix::NumberOfParametersType
Superclass1::NumberOfParametersType NumberOfParametersType
Definition: elxAdvancedAffineTransform.h:119
elastix::AdvancedAffineTransformElastix::CoordRepType
Superclass2::CoordRepType CoordRepType
Definition: elxAdvancedAffineTransform.h:138
itk::AdvancedCombinationTransform::InputCovariantVectorType
Superclass::InputCovariantVectorType InputCovariantVectorType
Definition: itkAdvancedCombinationTransform.h:87
elastix::TransformBase::ConfigurationPointer
Superclass::ConfigurationPointer ConfigurationPointer
Definition: elxTransformBase.h:147
elastix::AdvancedAffineTransformElastix::DirectionType
FixedImageType::DirectionType DirectionType
Definition: elxAdvancedAffineTransform.h:151
elastix::AdvancedAffineTransformElastix::InputVectorType
Superclass1::InputVectorType InputVectorType
Definition: elxAdvancedAffineTransform.h:121
elastix::TransformBase::ParameterMapType
ElastixType::ParameterMapType ParameterMapType
Definition: elxTransformBase.h:207
elastix::AdvancedAffineTransformElastix::ParameterMapType
Superclass2::ParameterMapType ParameterMapType
Definition: elxAdvancedAffineTransform.h:133
elastix::AdvancedAffineTransformElastix::~AdvancedAffineTransformElastix
virtual ~AdvancedAffineTransformElastix()
Definition: elxAdvancedAffineTransform.h:216
elastix::TransformBase
This class is the elastix base class for all Transforms.
Definition: elxTransformBase.h:133
elastix
Definition: elxFixedGenericPyramid.h:25
itkAdvancedMatrixOffsetTransformBase.h
elastix::TransformBase::RegistrationType
Superclass::RegistrationType RegistrationType
Definition: elxTransformBase.h:152


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