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#include <elxNormalizedMutualInformationMetric.h>
Static Public Member Functions | |
static Pointer | New () |
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static Pointer | New () |
Protected Member Functions | |
NormalizedMutualInformationMetric () | |
virtual | ~NormalizedMutualInformationMetric () |
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virtual void | ComputeLogMarginalPDF (MarginalPDFType &pdf) const |
virtual MeasureType | ComputeNormalizedMutualInformation (MeasureType &jointEntropy) const |
ParzenWindowNormalizedMutualInformationImageToImageMetric () | |
void | PrintSelf (std::ostream &os, Indent indent) const |
virtual | ~ParzenWindowNormalizedMutualInformationImageToImageMetric () |
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void | AfterThreadedComputePDFs (void) const |
virtual void | ComputeIncrementalMarginalPDFs (const JointPDFDerivativesType *incrementalPDF, IncrementalMarginalPDFType *fixedIncrementalMarginalPDF, IncrementalMarginalPDFType *movingIncrementalMarginalPDF) const |
virtual void | ComputeMarginalPDF (const JointPDFType *jointPDF, MarginalPDFType &marginalPDF, const unsigned int &direction) const |
virtual void | ComputePDFs (const ParametersType ¶meters) const |
virtual void | ComputePDFsAndIncrementalPDFs (const ParametersType ¶meters) const |
virtual void | ComputePDFsAndPDFDerivatives (const ParametersType ¶meters) const |
virtual void | ComputePDFsSingleThreaded (const ParametersType ¶meters) const |
void | EvaluateParzenValues (double parzenWindowTerm, OffsetValueType parzenWindowIndex, const KernelFunctionType *kernel, ParzenValueContainerType &parzenValues) const |
virtual void | GetValueAndAnalyticDerivative (const ParametersType &, MeasureType &, DerivativeType &) const |
virtual void | GetValueAndFiniteDifferenceDerivative (const ParametersType &, MeasureType &, DerivativeType &) const |
virtual void | InitializeHistograms (void) |
virtual void | InitializeKernels (void) |
virtual void | InitializeThreadingParameters (void) const |
itkAlignedTypedef (ITK_CACHE_LINE_ALIGNMENT, PaddedParzenWindowHistogramGetValueAndDerivativePerThreadStruct, AlignedParzenWindowHistogramGetValueAndDerivativePerThreadStruct) | |
itkPadStruct (ITK_CACHE_LINE_ALIGNMENT, ParzenWindowHistogramGetValueAndDerivativePerThreadStruct, PaddedParzenWindowHistogramGetValueAndDerivativePerThreadStruct) | |
void | LaunchComputePDFsThreaderCallback (void) const |
virtual void | NormalizeJointPDF (JointPDFType *pdf, const double &factor) const |
virtual void | NormalizeJointPDFDerivatives (JointPDFDerivativesType *pdf, const double &factor) const |
ParzenWindowHistogramImageToImageMetric () | |
void | PrintSelf (std::ostream &os, Indent indent) const |
void | ThreadedComputePDFs (ThreadIdType threadId) |
virtual void | UpdateJointPDFAndDerivatives (const RealType &fixedImageValue, const RealType &movingImageValue, const DerivativeType *imageJacobian, const NonZeroJacobianIndicesType *nzji, JointPDFType *jointPDF) const |
virtual void | UpdateJointPDFAndIncrementalPDFs (RealType fixedImageValue, RealType movingImageValue, RealType movingMaskValue, const DerivativeType &movingImageValuesRight, const DerivativeType &movingImageValuesLeft, const DerivativeType &movingMaskValuesRight, const DerivativeType &movingMaskValuesLeft, const NonZeroJacobianIndicesType &nzji) const |
void | UpdateJointPDFDerivatives (const JointPDFIndexType &pdfIndex, double factor, const DerivativeType &imageJacobian, const NonZeroJacobianIndicesType &nzji) const |
virtual | ~ParzenWindowHistogramImageToImageMetric () |
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AdvancedImageToImageMetric () | |
virtual void | AfterThreadedGetValueAndDerivative (MeasureType &value, DerivativeType &derivative) const |
virtual void | CheckForAdvancedTransform (void) |
virtual void | CheckForBSplineInterpolator (void) |
virtual void | CheckForBSplineTransform (void) |
virtual void | CheckNumberOfSamples (unsigned long wanted, unsigned long found) const |
virtual void | ComputeFixedImageExtrema (const FixedImageType *image, const FixedImageRegionType ®ion) |
virtual void | ComputeMovingImageExtrema (const MovingImageType *image, const MovingImageRegionType ®ion) |
virtual bool | EvaluateMovingImageValueAndDerivative (const MovingImagePointType &mappedPoint, RealType &movingImageValue, MovingImageDerivativeType *gradient) const |
virtual bool | EvaluateTransformJacobian (const FixedImagePointType &fixedImagePoint, TransformJacobianType &jacobian, NonZeroJacobianIndicesType &nzji) const |
virtual void | EvaluateTransformJacobianInnerProduct (const TransformJacobianType &jacobian, const MovingImageDerivativeType &movingImageDerivative, DerivativeType &imageJacobian) const |
virtual void | InitializeImageSampler (void) throw ( ExceptionObject ) |
virtual void | InitializeLimiters (void) |
virtual bool | IsInsideMovingMask (const MovingImagePointType &point) const |
itkAlignedTypedef (ITK_CACHE_LINE_ALIGNMENT, PaddedGetValueAndDerivativePerThreadStruct, AlignedGetValueAndDerivativePerThreadStruct) | |
itkPadStruct (ITK_CACHE_LINE_ALIGNMENT, GetValueAndDerivativePerThreadStruct, PaddedGetValueAndDerivativePerThreadStruct) | |
void | LaunchGetValueAndDerivativeThreaderCallback (void) const |
void | PrintSelf (std::ostream &os, Indent indent) const |
virtual void | SetUseFixedImageLimiter (bool _arg) |
virtual void | SetUseImageSampler (bool _arg) |
virtual void | SetUseMovingImageLimiter (bool _arg) |
virtual void | ThreadedGetValueAndDerivative (ThreadIdType threadID) |
virtual bool | TransformPoint (const FixedImagePointType &fixedImagePoint, MovingImagePointType &mappedPoint) const |
virtual | ~AdvancedImageToImageMetric () |
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virtual MeasureType | GetExactValue (const ParametersType ¶meters) |
MetricBase () | |
virtual | ~MetricBase () |
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BaseComponentSE () | |
virtual | ~BaseComponentSE () |
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BaseComponent () | |
virtual | ~BaseComponent () |
Private Member Functions | |
NormalizedMutualInformationMetric (const Self &) | |
void | operator= (const Self &) |
A metric based on the itk::ParzenWindowNormalizedMutualInformationImageToImageMetric.
The parameters used in this class are:
Metric: Select this metric as follows:
(Metric "NormalizedMutualInformation")
NumberOfHistogramBins: The size of the histogram. Must be given for each resolution, or for all resolutions at once.
example: (NumberOfHistogramBins 32 32 64)
The default is 32 for each resolution.
NumberOfFixedHistogramBins: The size of the histogram in the fixed dimension. Can be given for each resolution, or for all resolutions at once. If not given, NumberOfHistograms is used.
example: (NumberOfFixedHistogramBins 32 32 64)
The default is the value of NumberOfHistograms.
NumberOfMovingHistogramBins: The size of the histogram in the fixed dimension. Can be given for each resolution, or for all resolutions at once. If not given, NumberOfHistograms is used.
example: (NumberOfMovingHistogramBins 32 32 64)
The default is the value of NumberOfHistograms.
FixedKernelBSplineOrder: The B-spline order of the Parzen window, used to estimate the joint histogram. Can be given for each resolution, or for all resolutions at once.
example: (FixedKernelBSplineOrder 0 1 1)
The default value is 0.
MovingKernelBSplineOrder: The B-spline order of the Parzen window, used to estimate the joint histogram. Can be given for each resolution, or for all resolutions at once.
example: (MovingKernelBSplineOrder 3 3 3)
The default value is 3.
FixedLimitRangeRatio: The relative extension of the intensity range of the fixed image.
If your image has gray values from 0 to 1000 and the FixedLimitRangeRatio is 0.001, the joint histogram will expect fixed image gray values from -0.001 to 1000.001. This may be useful if you use high order B-spline interpolator for the fixed image.
example: (FixedLimitRangeRatio 0.001 0.01 0.01)
The default value is 0.01. Can be given for each resolution, or for all resolutions at once.
MovingLimitRangeRatio: The relative extension of the intensity range of the moving image.
If your image has gray values from 0 to 1000 and the MovingLimitRangeRatio is 0.001, the joint histogram will expect moving image gray values from -0.001 to 1000.001. This may be useful if you use high order B-spline interpolator for the moving image.
example: (MovingLimitRangeRatio 0.001 0.01 0.01)
The default value is 0.01. Can be given for each resolution, or for all resolutions at once.
Definition at line 71 of file elxNormalizedMutualInformationMetric.h.
typedef Superclass2::ConfigurationPointer elastix::NormalizedMutualInformationMetric< TElastix >::ConfigurationPointer |
Definition at line 160 of file elxNormalizedMutualInformationMetric.h.
typedef Superclass2::ConfigurationType elastix::NormalizedMutualInformationMetric< TElastix >::ConfigurationType |
Definition at line 159 of file elxNormalizedMutualInformationMetric.h.
typedef itk::SmartPointer< const Self > elastix::NormalizedMutualInformationMetric< TElastix >::ConstPointer |
Definition at line 87 of file elxNormalizedMutualInformationMetric.h.
typedef Superclass1::CoordinateRepresentationType elastix::NormalizedMutualInformationMetric< TElastix >::CoordinateRepresentationType |
Typedefs from the superclass.
Definition at line 104 of file elxNormalizedMutualInformationMetric.h.
typedef Superclass1::DerivativeType elastix::NormalizedMutualInformationMetric< TElastix >::DerivativeType |
Definition at line 130 of file elxNormalizedMutualInformationMetric.h.
typedef Superclass2::ElastixPointer elastix::NormalizedMutualInformationMetric< TElastix >::ElastixPointer |
Definition at line 158 of file elxNormalizedMutualInformationMetric.h.
typedef Superclass2::ElastixType elastix::NormalizedMutualInformationMetric< TElastix >::ElastixType |
Typedef's inherited from Elastix.
Definition at line 157 of file elxNormalizedMutualInformationMetric.h.
typedef Superclass1::FixedImageConstPointer elastix::NormalizedMutualInformationMetric< TElastix >::FixedImageConstPointer |
Definition at line 109 of file elxNormalizedMutualInformationMetric.h.
typedef Superclass1::FixedImageLimiterOutputType elastix::NormalizedMutualInformationMetric< TElastix >::FixedImageLimiterOutputType |
Definition at line 142 of file elxNormalizedMutualInformationMetric.h.
typedef Superclass1::FixedImageLimiterType elastix::NormalizedMutualInformationMetric< TElastix >::FixedImageLimiterType |
Definition at line 139 of file elxNormalizedMutualInformationMetric.h.
typedef Superclass1::FixedImageMaskPointer elastix::NormalizedMutualInformationMetric< TElastix >::FixedImageMaskPointer |
Definition at line 126 of file elxNormalizedMutualInformationMetric.h.
typedef Superclass1::FixedImageMaskType elastix::NormalizedMutualInformationMetric< TElastix >::FixedImageMaskType |
Definition at line 125 of file elxNormalizedMutualInformationMetric.h.
typedef Superclass1::FixedImagePixelType elastix::NormalizedMutualInformationMetric< TElastix >::FixedImagePixelType |
Definition at line 132 of file elxNormalizedMutualInformationMetric.h.
typedef Superclass1::FixedImageRegionType elastix::NormalizedMutualInformationMetric< TElastix >::FixedImageRegionType |
Definition at line 110 of file elxNormalizedMutualInformationMetric.h.
typedef Superclass1::FixedImageType elastix::NormalizedMutualInformationMetric< TElastix >::FixedImageType |
Definition at line 108 of file elxNormalizedMutualInformationMetric.h.
typedef Superclass1::GradientImageFilterPointer elastix::NormalizedMutualInformationMetric< TElastix >::GradientImageFilterPointer |
Definition at line 124 of file elxNormalizedMutualInformationMetric.h.
typedef Superclass1::GradientImageFilterType elastix::NormalizedMutualInformationMetric< TElastix >::GradientImageFilterType |
Definition at line 123 of file elxNormalizedMutualInformationMetric.h.
typedef Superclass1::GradientImagePointer elastix::NormalizedMutualInformationMetric< TElastix >::GradientImagePointer |
Definition at line 122 of file elxNormalizedMutualInformationMetric.h.
typedef Superclass1::GradientImageType elastix::NormalizedMutualInformationMetric< TElastix >::GradientImageType |
Definition at line 121 of file elxNormalizedMutualInformationMetric.h.
typedef Superclass1::GradientPixelType elastix::NormalizedMutualInformationMetric< TElastix >::GradientPixelType |
Definition at line 120 of file elxNormalizedMutualInformationMetric.h.
typedef Superclass1::ImageSampleContainerPointer elastix::NormalizedMutualInformationMetric< TElastix >::ImageSampleContainerPointer |
Definition at line 138 of file elxNormalizedMutualInformationMetric.h.
typedef Superclass1::ImageSampleContainerType elastix::NormalizedMutualInformationMetric< TElastix >::ImageSampleContainerType |
Definition at line 136 of file elxNormalizedMutualInformationMetric.h.
typedef Superclass1::ImageSamplerPointer elastix::NormalizedMutualInformationMetric< TElastix >::ImageSamplerPointer |
Definition at line 135 of file elxNormalizedMutualInformationMetric.h.
typedef Superclass1::ImageSamplerType elastix::NormalizedMutualInformationMetric< TElastix >::ImageSamplerType |
Definition at line 134 of file elxNormalizedMutualInformationMetric.h.
typedef Superclass1::InputPointType elastix::NormalizedMutualInformationMetric< TElastix >::InputPointType |
Definition at line 113 of file elxNormalizedMutualInformationMetric.h.
typedef Superclass1::InterpolatorPointer elastix::NormalizedMutualInformationMetric< TElastix >::InterpolatorPointer |
Definition at line 118 of file elxNormalizedMutualInformationMetric.h.
typedef Superclass1::InterpolatorType elastix::NormalizedMutualInformationMetric< TElastix >::InterpolatorType |
Definition at line 117 of file elxNormalizedMutualInformationMetric.h.
typedef Superclass2::ITKBaseType elastix::NormalizedMutualInformationMetric< TElastix >::ITKBaseType |
Definition at line 163 of file elxNormalizedMutualInformationMetric.h.
typedef Superclass1::MeasureType elastix::NormalizedMutualInformationMetric< TElastix >::MeasureType |
Definition at line 129 of file elxNormalizedMutualInformationMetric.h.
typedef Superclass1::MovingImageConstPointer elastix::NormalizedMutualInformationMetric< TElastix >::MovingImageConstPointer |
Definition at line 107 of file elxNormalizedMutualInformationMetric.h.
typedef Superclass1::MovingImageDerivativeScalesType elastix::NormalizedMutualInformationMetric< TElastix >::MovingImageDerivativeScalesType |
Definition at line 146 of file elxNormalizedMutualInformationMetric.h.
typedef Superclass1::MovingImageLimiterOutputType elastix::NormalizedMutualInformationMetric< TElastix >::MovingImageLimiterOutputType |
Definition at line 144 of file elxNormalizedMutualInformationMetric.h.
typedef Superclass1::MovingImageLimiterType elastix::NormalizedMutualInformationMetric< TElastix >::MovingImageLimiterType |
Definition at line 140 of file elxNormalizedMutualInformationMetric.h.
typedef Superclass1::MovingImageMaskPointer elastix::NormalizedMutualInformationMetric< TElastix >::MovingImageMaskPointer |
Definition at line 128 of file elxNormalizedMutualInformationMetric.h.
typedef Superclass1::MovingImageMaskType elastix::NormalizedMutualInformationMetric< TElastix >::MovingImageMaskType |
Definition at line 127 of file elxNormalizedMutualInformationMetric.h.
typedef Superclass1::MovingImagePixelType elastix::NormalizedMutualInformationMetric< TElastix >::MovingImagePixelType |
Definition at line 106 of file elxNormalizedMutualInformationMetric.h.
typedef Superclass1::MovingImageRegionType elastix::NormalizedMutualInformationMetric< TElastix >::MovingImageRegionType |
Definition at line 133 of file elxNormalizedMutualInformationMetric.h.
typedef Superclass1::MovingImageType elastix::NormalizedMutualInformationMetric< TElastix >::MovingImageType |
Definition at line 105 of file elxNormalizedMutualInformationMetric.h.
typedef Superclass1::OutputPointType elastix::NormalizedMutualInformationMetric< TElastix >::OutputPointType |
Definition at line 114 of file elxNormalizedMutualInformationMetric.h.
typedef Superclass1::ParametersType elastix::NormalizedMutualInformationMetric< TElastix >::ParametersType |
Definition at line 131 of file elxNormalizedMutualInformationMetric.h.
typedef itk::SmartPointer< Self > elastix::NormalizedMutualInformationMetric< TElastix >::Pointer |
Definition at line 86 of file elxNormalizedMutualInformationMetric.h.
typedef Superclass1::RealType elastix::NormalizedMutualInformationMetric< TElastix >::RealType |
Definition at line 119 of file elxNormalizedMutualInformationMetric.h.
typedef Superclass2::RegistrationPointer elastix::NormalizedMutualInformationMetric< TElastix >::RegistrationPointer |
Definition at line 162 of file elxNormalizedMutualInformationMetric.h.
typedef Superclass2::RegistrationType elastix::NormalizedMutualInformationMetric< TElastix >::RegistrationType |
Definition at line 161 of file elxNormalizedMutualInformationMetric.h.
typedef NormalizedMutualInformationMetric elastix::NormalizedMutualInformationMetric< TElastix >::Self |
Standard ITK-stuff.
Definition at line 81 of file elxNormalizedMutualInformationMetric.h.
typedef itk::ParzenWindowNormalizedMutualInformationImageToImageMetric< typename MetricBase< TElastix >::FixedImageType, typename MetricBase< TElastix >::MovingImageType > elastix::NormalizedMutualInformationMetric< TElastix >::Superclass1 |
Definition at line 84 of file elxNormalizedMutualInformationMetric.h.
typedef MetricBase< TElastix > elastix::NormalizedMutualInformationMetric< TElastix >::Superclass2 |
Definition at line 85 of file elxNormalizedMutualInformationMetric.h.
typedef TimerType::Pointer elastix::NormalizedMutualInformationMetric< TElastix >::TimerPointer |
Typedef for timer.
Definition at line 168 of file elxNormalizedMutualInformationMetric.h.
typedef tmr::Timer elastix::NormalizedMutualInformationMetric< TElastix >::TimerType |
Typedef for timer.
Definition at line 166 of file elxNormalizedMutualInformationMetric.h.
typedef Superclass1::TransformJacobianType elastix::NormalizedMutualInformationMetric< TElastix >::TransformJacobianType |
Definition at line 116 of file elxNormalizedMutualInformationMetric.h.
typedef Superclass1::TransformParametersType elastix::NormalizedMutualInformationMetric< TElastix >::TransformParametersType |
Definition at line 115 of file elxNormalizedMutualInformationMetric.h.
typedef Superclass1::TransformPointer elastix::NormalizedMutualInformationMetric< TElastix >::TransformPointer |
Definition at line 112 of file elxNormalizedMutualInformationMetric.h.
typedef Superclass1::TransformType elastix::NormalizedMutualInformationMetric< TElastix >::TransformType |
Definition at line 111 of file elxNormalizedMutualInformationMetric.h.
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inlineprotected |
The constructor.
Definition at line 184 of file elxNormalizedMutualInformationMetric.h.
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inlineprotectedvirtual |
The destructor.
Definition at line 191 of file elxNormalizedMutualInformationMetric.h.
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private |
The private constructor.
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virtual |
Execute stuff before each new pyramid resolution:
Reimplemented from elastix::BaseComponent.
elastix::NormalizedMutualInformationMetric< TElastix >::elxClassNameMacro | ( | "NormalizedMutualInformation" | ) |
Name of this class. Use this name in the parameter file to select this specific metric.
example: (Metric "NormalizedMutualInformation")
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virtual |
Run-time type information (and related methods).
Reimplemented from elastix::MetricBase< TElastix >.
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virtual |
Set up a timer to measure the intialisation time and call the Superclass' implementation.
Reimplemented from itk::AdvancedImageToImageMetric< MetricBase< TElastix >::FixedImageType, MetricBase< TElastix >::MovingImageType >.
elastix::NormalizedMutualInformationMetric< TElastix >::itkStaticConstMacro | ( | FixedImageDimension | , |
unsigned | int, | ||
FixedImageType::ImageDimension | |||
) |
The fixed image dimension.
elastix::NormalizedMutualInformationMetric< TElastix >::itkStaticConstMacro | ( | MovingImageDimension | , |
unsigned | int, | ||
MovingImageType::ImageDimension | |||
) |
The moving image dimension.
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static |
Method for creation through the object factory.
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private |
The private copy constructor.
Generated on 27-04-2014 for elastix by ![]() |
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