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Computer Assited Medical Intervention Tool Kit
version 4.1
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26 #ifndef MANAGER_MONITORINGMANAGER_H
27 #define MANAGER_MONITORINGMANAGER_H
35 #include <MonitorIn.hxx>
36 #include <MonitorOut.hxx>
66 virtual bool init() = 0;
68 virtual void end() = 0;
73 virtual void doMove() = 0;
75 virtual bool checkStop() = 0;
81 void reload(
bool delPml =
true);
86 void writeOutput(
const char* fileName);
88 void writeCsv(
const char* fileName);
90 void saveMmlIn(
const char* fileName);
96 double getCurrentTime();
97 double getCurrentStep();
98 double getStepComputingTime();
99 double getComputingTime();
115 std::string getPmlFileName();
116 std::string getLmlFileName();
117 std::string getMmlFileName();
118 std::string getmmlFileFolder();
121 void getOldPosition(
double pos[3],
unsigned int index);
125 void setCurrentTime(
double time);
128 void storeOldPositions();
130 void updateCurrentTime();
132 void updateComputingTime();
137 void setDt(
double dt);
139 void setRefresh(
double refresh);
141 void setPmlFileName(
const char* file);
143 void setLmlFileName(
const char* file);
147 void addMonitor(
Monitor* monitor);
149 Monitor* getMonitor(
const unsigned int i)
const;
151 void deleteMonitor(
const unsigned int i);
153 unsigned int numberOfMonitor()
const;
163 std::unique_ptr<mml::MonitoringIn> mmlIn;
165 std::vector<Monitor*> monitors;
167 std::vector<mml::TimeStep*> times;
174 std::string simulatorName;
181 double stepComputingTime;
183 double computingTime;
190 void buildMonitors();
196 void buildPmlAndSimulator(
bool delPml =
true);
198 void buildPmlAndSimulatorfromPml();
200 void buildPmlAndSimulatorfromSimulator();
207 double* oldPositionPointer;
215 std::string pmlFileName;
217 std::string lmlFileName;
219 std::string mmlFileName;
221 std::string mmlFileFolder;
225 #endif // MANAGER_MONITORINGMANAGERF_H
std::string getMmlFileName()
Definition: MonitoringManager.cpp:294
void buildPmlAndSimulator(bool delPml=true)
build physical model and simulator
Definition: MonitoringManager.cpp:521
void setRefresh(double refresh)
change refresh and save modification into mmlIn
Definition: MonitoringManager.cpp:398
PhysicalModel * takePml()
This is nearly the same as getPml(), but it also transfers ownership of the pointer.
Definition: MonitoringManager.cpp:267
void getOldPosition(double pos[3], unsigned int index)
get atom position for precedent step
Definition: MonitoringManager.cpp:334
void simulate()
perform simulation loop, make tests and save monitors' data into output file
Definition: MonitoringManager.cpp:427
An atom has an unique index in the physical model object, a 3D position, and different basic properti...
Definition: Atom.h:48
void addMonitor(Monitor *monitor)
add a monitor to the list
Definition: MonitoringManager.cpp:365
MonitoringManager(const char *mml)
constructor
Definition: MonitoringManager.cpp:43
PhysicalModel * getPml()
Definition: MonitoringManager.cpp:262
void setDt(double dt)
change dt and save modification into mmlIn
Definition: MonitoringManager.cpp:392
void setLmlFileName(const char *file)
change lml file name and save modification into mmlIn
Definition: MonitoringManager.cpp:404
virtual ~MonitoringManager()
destructor
Definition: MonitoringManager.cpp:110
double getDt()
Definition: MonitoringManager.cpp:226
double getCurrentStep()
Definition: MonitoringManager.cpp:241
#define MML_API
Definition: MMLAPI.h:42
static SimulatorFactory * getInstance()
return the unique instance of the factory
Definition: SimulatorFactory.cpp:56
void saveMonitors()
Save save monitors' state for the current time.
Definition: MonitoringManager.cpp:199
void updateComputingTime()
add step computing time to total computing time
Definition: MonitoringManager.cpp:324
double getComputingTime()
Definition: MonitoringManager.cpp:252
std::string getLmlFileName()
Definition: MonitoringManager.cpp:289
Monitor * getMonitor(const unsigned int i) const
get a monitor by its index in the list
Definition: MonitoringManager.cpp:377
A simulator engine is used to compute the displacements of all atoms of the model.
Definition: Simulator.h:45
void setCurrentTime(double time)
mutators for simulation parameters
Definition: MonitoringManager.cpp:312
void buildMonitors()
build monitors
Definition: MonitoringManager.cpp:509
void buildPmlAndSimulatorfromPml()
build physical model and simulator from a pml file
Definition: MonitoringManager.cpp:551
void writeOutput(const char *fileName)
Write all saved monitors' states into mmlOut file.
Definition: MonitoringManager.cpp:136
std::string getPmlFileName()
Definition: MonitoringManager.cpp:284
bool isLmlPresent()
check if a lml is present
Definition: MonitoringManager.cpp:485
std::string getmmlFileFolder()
Definition: MonitoringManager.cpp:299
virtual void createPml(const char *inputFile, const char *pmlFile)=0
Create a pml file from a simulator specific imput file.
This is the main class of this project. Following a nice concept, a physical model is able to represe...
Definition: PhysicalModel.h:85
void buildLoads()
build the loads if lml file was given
Definition: MonitoringManager.cpp:490
void saveMmlIn(const char *fileName)
save current version of mml in
Definition: MonitoringManager.cpp:416
void storeOldPositions()
store old positions before next step
Definition: MonitoringManager.cpp:360
Loads * getLml()
Definition: MonitoringManager.cpp:273
unsigned int numberOfMonitor() const
get the number of monitors stored in the list
Definition: MonitoringManager.cpp:387
Simulator * getSimulator()
Definition: MonitoringManager.cpp:305
void rewind()
Rewind simulation.
Definition: MonitoringManager.cpp:444
static Monitor * createMonitor(mml::Monitor *m, MonitoringManager *monitoringManager)
create a monitor according to the xsdcxx object monitor
Definition: MonitorFactory.cpp:37
void setPmlFileName(const char *file)
change pml file name and save modification into mmlIn
Definition: MonitoringManager.cpp:410
double getRefresh()
Definition: MonitoringManager.cpp:231
void deleteMonitor(const unsigned int i)
delete a monitor and remove it from the list using its index
Definition: MonitoringManager.cpp:370
Manager of the benchmark tests. Do simulation loop and tests.
Definition: MonitoringManager.h:49
This class makes it possible to manage a list of "Load". Remember that Load is an abstract class (con...
Definition: Loads.h:70
Simulator * createSimulator(std::string id, MonitoringManager *monitoringManager)
Creates a Simulator based on its string id or return null if there is no id in the map.
Definition: SimulatorFactory.cpp:37
void writeCsv(const char *fileName)
Write all saved monitors'state into csv file.
Definition: MonitoringManager.cpp:167
void updateCurrentTime()
add dt to current time
Definition: MonitoringManager.cpp:318
void buildPmlAndSimulatorfromSimulator()
build physical model and simulator from a specific simulator file
Definition: MonitoringManager.cpp:560
Loads * takeLml()
This is nearly the same as getLml(), but it also transfers ownership of the pointer.
Definition: MonitoringManager.cpp:278
double getCurrentTime()
Definition: MonitoringManager.cpp:236
PhysicalModel * getInitPml()
Definition: MonitoringManager.cpp:257
void refresh()
refresh the display
void reload(bool delPml=true)
reload simulation with current parameters
Definition: MonitoringManager.cpp:461
A monitor calculate and store followed data (ex:calculation between current position and references) ...
Definition: Monitor.h:48
void incStep()
increment step by one
Definition: MonitoringManager.cpp:329
double getStepComputingTime()
Definition: MonitoringManager.cpp:246
bool isPmlPresent()
check if a scn is present instead of pmlFileName
Definition: MonitoringManager.cpp:480