Class EntitySrcGen
- java.lang.Object
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- org.biojava.nbio.structure.io.mmcif.model.EntitySrcGen
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public class EntitySrcGen extends java.lang.Object
Data items in the ENTITY_SRC_GEN category record details of the source from which the entity was obtained in cases where the source was genetically manipulated. The following are treated separately: items pertaining to the tissue from which the gene was obtained, items pertaining to the host organism for gene expression and items pertaining to the actual producing organism (plasmid).- Author:
- Andreas Prlic
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Constructor Summary
Constructors Constructor Description EntitySrcGen()
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Method Summary
All Methods Instance Methods Concrete Methods Modifier and Type Method Description java.lang.String
getEntity_id()
java.lang.String
getExpression_system_id()
java.lang.String
getGene_src_common_name()
java.lang.String
getGene_src_details()
java.lang.String
getGene_src_dev_stage()
java.lang.String
getGene_src_genus()
java.lang.String
getGene_src_species()
java.lang.String
getGene_src_strain()
java.lang.String
getGene_src_tissue()
java.lang.String
getGene_src_tissue_fraction()
java.lang.String
getHost_org_common_name()
java.lang.String
getHost_org_details()
java.lang.String
getHost_org_genus()
java.lang.String
getHost_org_species()
java.lang.String
getHost_org_strain()
java.lang.String
getPdbx_alt_source_flag()
java.lang.String
getPdbx_beg_seq_num()
java.lang.String
getPdbx_description()
java.lang.String
getPdbx_end_seq_num()
java.lang.String
getPdbx_gene_src_atcc()
java.lang.String
getPdbx_gene_src_cell()
java.lang.String
getPdbx_gene_src_cell_line()
java.lang.String
getPdbx_gene_src_cellular_location()
java.lang.String
getPdbx_gene_src_fragment()
java.lang.String
getPdbx_gene_src_gene()
java.lang.String
getPdbx_gene_src_ncbi_taxonomy_id()
java.lang.String
getPdbx_gene_src_organ()
java.lang.String
getPdbx_gene_src_organelle()
java.lang.String
getPdbx_gene_src_plasmid()
java.lang.String
getPdbx_gene_src_plasmid_name()
java.lang.String
getPdbx_gene_src_scientific_name()
java.lang.String
getPdbx_gene_src_variant()
java.lang.String
getPdbx_host_org_atcc()
java.lang.String
getPdbx_host_org_cell()
java.lang.String
getPdbx_host_org_cell_line()
java.lang.String
getPdbx_host_org_cellular_location()
java.lang.String
getPdbx_host_org_culture_collection()
java.lang.String
getPdbx_host_org_gene()
java.lang.String
getPdbx_host_org_ncbi_taxonomy_id()
java.lang.String
getPdbx_host_org_organ()
java.lang.String
getPdbx_host_org_organelle()
java.lang.String
getPdbx_host_org_scientific_name()
java.lang.String
getPdbx_host_org_strain()
java.lang.String
getPdbx_host_org_tissue()
java.lang.String
getPdbx_host_org_tissue_fraction()
java.lang.String
getPdbx_host_org_variant()
java.lang.String
getPdbx_host_org_vector()
java.lang.String
getPdbx_host_org_vector_type()
java.lang.String
getPdbx_seq_type()
java.lang.String
getPdbx_src_id()
java.lang.String
getPlasmid_details()
java.lang.String
getPlasmid_name()
java.lang.String
getStart_construct_id()
void
setEntity_id(java.lang.String entity_id)
void
setExpression_system_id(java.lang.String expression_system_id)
void
setGene_src_common_name(java.lang.String gene_src_common_name)
void
setGene_src_details(java.lang.String gene_src_details)
void
setGene_src_dev_stage(java.lang.String gene_src_dev_stage)
void
setGene_src_genus(java.lang.String gene_src_genus)
void
setGene_src_species(java.lang.String gene_src_species)
void
setGene_src_strain(java.lang.String gene_src_strain)
void
setGene_src_tissue(java.lang.String gene_src_tissue)
void
setGene_src_tissue_fraction(java.lang.String gene_src_tissue_fraction)
void
setHost_org_common_name(java.lang.String host_org_common_name)
void
setHost_org_details(java.lang.String host_org_details)
void
setHost_org_genus(java.lang.String host_org_genus)
void
setHost_org_species(java.lang.String host_org_species)
void
setHost_org_strain(java.lang.String host_org_strain)
void
setPdbx_alt_source_flag(java.lang.String pdbx_alt_source_flag)
void
setPdbx_beg_seq_num(java.lang.String pdbx_beg_seq_num)
void
setPdbx_description(java.lang.String pdbx_description)
void
setPdbx_end_seq_num(java.lang.String pdbx_end_seq_num)
void
setPdbx_gene_src_atcc(java.lang.String pdbx_gene_src_atcc)
void
setPdbx_gene_src_cell(java.lang.String pdbx_gene_src_cell)
void
setPdbx_gene_src_cell_line(java.lang.String pdbx_gene_src_cell_line)
void
setPdbx_gene_src_cellular_location(java.lang.String pdbx_gene_src_cellular_location)
void
setPdbx_gene_src_fragment(java.lang.String pdbx_gene_src_fragment)
void
setPdbx_gene_src_gene(java.lang.String pdbx_gene_src_gene)
void
setPdbx_gene_src_ncbi_taxonomy_id(java.lang.String pdbx_gene_src_ncbi_taxonomy_id)
void
setPdbx_gene_src_organ(java.lang.String pdbx_gene_src_organ)
void
setPdbx_gene_src_organelle(java.lang.String pdbx_gene_src_organelle)
void
setPdbx_gene_src_plasmid(java.lang.String pdbx_gene_src_plasmid)
void
setPdbx_gene_src_plasmid_name(java.lang.String pdbx_gene_src_plasmid_name)
void
setPdbx_gene_src_scientific_name(java.lang.String pdbx_gene_src_scientific_name)
void
setPdbx_gene_src_variant(java.lang.String pdbx_gene_src_variant)
void
setPdbx_host_org_atcc(java.lang.String pdbx_host_org_atcc)
void
setPdbx_host_org_cell(java.lang.String pdbx_host_org_cell)
void
setPdbx_host_org_cell_line(java.lang.String pdbx_host_org_cell_line)
void
setPdbx_host_org_cellular_location(java.lang.String pdbx_host_org_cellular_location)
void
setPdbx_host_org_culture_collection(java.lang.String pdbx_host_org_culture_collection)
void
setPdbx_host_org_gene(java.lang.String pdbx_host_org_gene)
void
setPdbx_host_org_ncbi_taxonomy_id(java.lang.String pdbx_host_org_ncbi_taxonomy_id)
void
setPdbx_host_org_organ(java.lang.String pdbx_host_org_organ)
void
setPdbx_host_org_organelle(java.lang.String pdbx_host_org_organelle)
void
setPdbx_host_org_scientific_name(java.lang.String pdbx_host_org_scientific_name)
void
setPdbx_host_org_strain(java.lang.String pdbx_host_org_strain)
void
setPdbx_host_org_tissue(java.lang.String pdbx_host_org_tissue)
void
setPdbx_host_org_tissue_fraction(java.lang.String pdbx_host_org_tissue_fraction)
void
setPdbx_host_org_variant(java.lang.String pdbx_host_org_variant)
void
setPdbx_host_org_vector(java.lang.String pdbx_host_org_vector)
void
setPdbx_host_org_vector_type(java.lang.String pdbx_host_org_vector_type)
void
setPdbx_seq_type(java.lang.String pdbx_seq_type)
void
setPdbx_src_id(java.lang.String pdbx_src_id)
void
setPlasmid_details(java.lang.String plasmid_details)
void
setPlasmid_name(java.lang.String plasmid_name)
void
setStart_construct_id(java.lang.String start_construct_id)
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Method Detail
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getEntity_id
public java.lang.String getEntity_id()
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setEntity_id
public void setEntity_id(java.lang.String entity_id)
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getExpression_system_id
public java.lang.String getExpression_system_id()
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setExpression_system_id
public void setExpression_system_id(java.lang.String expression_system_id)
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getGene_src_common_name
public java.lang.String getGene_src_common_name()
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setGene_src_common_name
public void setGene_src_common_name(java.lang.String gene_src_common_name)
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getGene_src_details
public java.lang.String getGene_src_details()
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setGene_src_details
public void setGene_src_details(java.lang.String gene_src_details)
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getGene_src_dev_stage
public java.lang.String getGene_src_dev_stage()
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setGene_src_dev_stage
public void setGene_src_dev_stage(java.lang.String gene_src_dev_stage)
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getGene_src_genus
public java.lang.String getGene_src_genus()
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setGene_src_genus
public void setGene_src_genus(java.lang.String gene_src_genus)
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getGene_src_species
public java.lang.String getGene_src_species()
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setGene_src_species
public void setGene_src_species(java.lang.String gene_src_species)
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getGene_src_strain
public java.lang.String getGene_src_strain()
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setGene_src_strain
public void setGene_src_strain(java.lang.String gene_src_strain)
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getGene_src_tissue
public java.lang.String getGene_src_tissue()
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setGene_src_tissue
public void setGene_src_tissue(java.lang.String gene_src_tissue)
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getGene_src_tissue_fraction
public java.lang.String getGene_src_tissue_fraction()
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setGene_src_tissue_fraction
public void setGene_src_tissue_fraction(java.lang.String gene_src_tissue_fraction)
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getHost_org_common_name
public java.lang.String getHost_org_common_name()
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setHost_org_common_name
public void setHost_org_common_name(java.lang.String host_org_common_name)
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getHost_org_details
public java.lang.String getHost_org_details()
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setHost_org_details
public void setHost_org_details(java.lang.String host_org_details)
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getHost_org_genus
public java.lang.String getHost_org_genus()
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setHost_org_genus
public void setHost_org_genus(java.lang.String host_org_genus)
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getHost_org_species
public java.lang.String getHost_org_species()
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setHost_org_species
public void setHost_org_species(java.lang.String host_org_species)
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getHost_org_strain
public java.lang.String getHost_org_strain()
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setHost_org_strain
public void setHost_org_strain(java.lang.String host_org_strain)
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getPdbx_src_id
public java.lang.String getPdbx_src_id()
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setPdbx_src_id
public void setPdbx_src_id(java.lang.String pdbx_src_id)
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getPdbx_seq_type
public java.lang.String getPdbx_seq_type()
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setPdbx_seq_type
public void setPdbx_seq_type(java.lang.String pdbx_seq_type)
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getPdbx_alt_source_flag
public java.lang.String getPdbx_alt_source_flag()
- Returns:
- the pdbx_alt_source_flag
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setPdbx_alt_source_flag
public void setPdbx_alt_source_flag(java.lang.String pdbx_alt_source_flag)
- Parameters:
pdbx_alt_source_flag
- the pdbx_alt_source_flag to set
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getPdbx_beg_seq_num
public java.lang.String getPdbx_beg_seq_num()
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setPdbx_beg_seq_num
public void setPdbx_beg_seq_num(java.lang.String pdbx_beg_seq_num)
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getPdbx_end_seq_num
public java.lang.String getPdbx_end_seq_num()
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setPdbx_end_seq_num
public void setPdbx_end_seq_num(java.lang.String pdbx_end_seq_num)
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getPdbx_description
public java.lang.String getPdbx_description()
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setPdbx_description
public void setPdbx_description(java.lang.String pdbx_description)
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getPdbx_gene_src_atcc
public java.lang.String getPdbx_gene_src_atcc()
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setPdbx_gene_src_atcc
public void setPdbx_gene_src_atcc(java.lang.String pdbx_gene_src_atcc)
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getPdbx_gene_src_cell
public java.lang.String getPdbx_gene_src_cell()
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setPdbx_gene_src_cell
public void setPdbx_gene_src_cell(java.lang.String pdbx_gene_src_cell)
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getPdbx_gene_src_cell_line
public java.lang.String getPdbx_gene_src_cell_line()
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setPdbx_gene_src_cell_line
public void setPdbx_gene_src_cell_line(java.lang.String pdbx_gene_src_cell_line)
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getPdbx_gene_src_cellular_location
public java.lang.String getPdbx_gene_src_cellular_location()
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setPdbx_gene_src_cellular_location
public void setPdbx_gene_src_cellular_location(java.lang.String pdbx_gene_src_cellular_location)
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getPdbx_gene_src_fragment
public java.lang.String getPdbx_gene_src_fragment()
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setPdbx_gene_src_fragment
public void setPdbx_gene_src_fragment(java.lang.String pdbx_gene_src_fragment)
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getPdbx_gene_src_gene
public java.lang.String getPdbx_gene_src_gene()
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setPdbx_gene_src_gene
public void setPdbx_gene_src_gene(java.lang.String pdbx_gene_src_gene)
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getPdbx_gene_src_ncbi_taxonomy_id
public java.lang.String getPdbx_gene_src_ncbi_taxonomy_id()
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setPdbx_gene_src_ncbi_taxonomy_id
public void setPdbx_gene_src_ncbi_taxonomy_id(java.lang.String pdbx_gene_src_ncbi_taxonomy_id)
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getPdbx_gene_src_organ
public java.lang.String getPdbx_gene_src_organ()
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setPdbx_gene_src_organ
public void setPdbx_gene_src_organ(java.lang.String pdbx_gene_src_organ)
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getPdbx_gene_src_organelle
public java.lang.String getPdbx_gene_src_organelle()
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setPdbx_gene_src_organelle
public void setPdbx_gene_src_organelle(java.lang.String pdbx_gene_src_organelle)
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getPdbx_gene_src_plasmid
public java.lang.String getPdbx_gene_src_plasmid()
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setPdbx_gene_src_plasmid
public void setPdbx_gene_src_plasmid(java.lang.String pdbx_gene_src_plasmid)
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getPdbx_gene_src_plasmid_name
public java.lang.String getPdbx_gene_src_plasmid_name()
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setPdbx_gene_src_plasmid_name
public void setPdbx_gene_src_plasmid_name(java.lang.String pdbx_gene_src_plasmid_name)
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getPdbx_gene_src_scientific_name
public java.lang.String getPdbx_gene_src_scientific_name()
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setPdbx_gene_src_scientific_name
public void setPdbx_gene_src_scientific_name(java.lang.String pdbx_gene_src_scientific_name)
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getPdbx_gene_src_variant
public java.lang.String getPdbx_gene_src_variant()
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setPdbx_gene_src_variant
public void setPdbx_gene_src_variant(java.lang.String pdbx_gene_src_variant)
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getPdbx_host_org_atcc
public java.lang.String getPdbx_host_org_atcc()
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setPdbx_host_org_atcc
public void setPdbx_host_org_atcc(java.lang.String pdbx_host_org_atcc)
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getPdbx_host_org_cell
public java.lang.String getPdbx_host_org_cell()
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setPdbx_host_org_cell
public void setPdbx_host_org_cell(java.lang.String pdbx_host_org_cell)
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getPdbx_host_org_cell_line
public java.lang.String getPdbx_host_org_cell_line()
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setPdbx_host_org_cell_line
public void setPdbx_host_org_cell_line(java.lang.String pdbx_host_org_cell_line)
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getPdbx_host_org_cellular_location
public java.lang.String getPdbx_host_org_cellular_location()
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setPdbx_host_org_cellular_location
public void setPdbx_host_org_cellular_location(java.lang.String pdbx_host_org_cellular_location)
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getPdbx_host_org_culture_collection
public java.lang.String getPdbx_host_org_culture_collection()
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setPdbx_host_org_culture_collection
public void setPdbx_host_org_culture_collection(java.lang.String pdbx_host_org_culture_collection)
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getPdbx_host_org_gene
public java.lang.String getPdbx_host_org_gene()
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setPdbx_host_org_gene
public void setPdbx_host_org_gene(java.lang.String pdbx_host_org_gene)
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getPdbx_host_org_ncbi_taxonomy_id
public java.lang.String getPdbx_host_org_ncbi_taxonomy_id()
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setPdbx_host_org_ncbi_taxonomy_id
public void setPdbx_host_org_ncbi_taxonomy_id(java.lang.String pdbx_host_org_ncbi_taxonomy_id)
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getPdbx_host_org_organ
public java.lang.String getPdbx_host_org_organ()
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setPdbx_host_org_organ
public void setPdbx_host_org_organ(java.lang.String pdbx_host_org_organ)
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getPdbx_host_org_organelle
public java.lang.String getPdbx_host_org_organelle()
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setPdbx_host_org_organelle
public void setPdbx_host_org_organelle(java.lang.String pdbx_host_org_organelle)
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getPdbx_host_org_scientific_name
public java.lang.String getPdbx_host_org_scientific_name()
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setPdbx_host_org_scientific_name
public void setPdbx_host_org_scientific_name(java.lang.String pdbx_host_org_scientific_name)
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getPdbx_host_org_strain
public java.lang.String getPdbx_host_org_strain()
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setPdbx_host_org_strain
public void setPdbx_host_org_strain(java.lang.String pdbx_host_org_strain)
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getPdbx_host_org_tissue
public java.lang.String getPdbx_host_org_tissue()
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setPdbx_host_org_tissue
public void setPdbx_host_org_tissue(java.lang.String pdbx_host_org_tissue)
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getPdbx_host_org_tissue_fraction
public java.lang.String getPdbx_host_org_tissue_fraction()
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setPdbx_host_org_tissue_fraction
public void setPdbx_host_org_tissue_fraction(java.lang.String pdbx_host_org_tissue_fraction)
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getPdbx_host_org_variant
public java.lang.String getPdbx_host_org_variant()
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setPdbx_host_org_variant
public void setPdbx_host_org_variant(java.lang.String pdbx_host_org_variant)
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getPdbx_host_org_vector
public java.lang.String getPdbx_host_org_vector()
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setPdbx_host_org_vector
public void setPdbx_host_org_vector(java.lang.String pdbx_host_org_vector)
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getPdbx_host_org_vector_type
public java.lang.String getPdbx_host_org_vector_type()
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setPdbx_host_org_vector_type
public void setPdbx_host_org_vector_type(java.lang.String pdbx_host_org_vector_type)
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getPlasmid_details
public java.lang.String getPlasmid_details()
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setPlasmid_details
public void setPlasmid_details(java.lang.String plasmid_details)
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getPlasmid_name
public java.lang.String getPlasmid_name()
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setPlasmid_name
public void setPlasmid_name(java.lang.String plasmid_name)
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getStart_construct_id
public java.lang.String getStart_construct_id()
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setStart_construct_id
public void setStart_construct_id(java.lang.String start_construct_id)
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