Uses of Class
org.forester.ws.seqdb.UniProtTaxonomy
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Packages that use UniProtTaxonomy Package Description org.forester.analysis org.forester.ws.seqdb -
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Uses of UniProtTaxonomy in org.forester.analysis
Methods in org.forester.analysis that return UniProtTaxonomy Modifier and Type Method Description static UniProtTaxonomy
TaxonomyDataManager. obtainUniProtTaxonomy(java.lang.String simple_name, org.forester.analysis.TaxonomyDataManager.QUERY_TYPE qt)
static UniProtTaxonomy
TaxonomyDataManager. obtainUniProtTaxonomy(Taxonomy tax, java.lang.Object query, org.forester.analysis.TaxonomyDataManager.QUERY_TYPE qt)
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Uses of UniProtTaxonomy in org.forester.ws.seqdb
Methods in org.forester.ws.seqdb that return UniProtTaxonomy Modifier and Type Method Description UniProtTaxonomy
UniProtTaxonomy. copy()
Creates deep copy for all fields, except lineage.static UniProtTaxonomy
UniProtTaxonomy. createSpecialFromScientificName(java.lang.String sn)
Methods in org.forester.ws.seqdb that return types with arguments of type UniProtTaxonomy Modifier and Type Method Description static java.util.List<UniProtTaxonomy>
SequenceDbWsTools. getTaxonomiesFromCommonNameStrict(java.lang.String cn, int max_taxonomies_return)
static java.util.List<UniProtTaxonomy>
SequenceDbWsTools. getTaxonomiesFromId(java.lang.String id, int max_taxonomies_return)
static java.util.List<UniProtTaxonomy>
SequenceDbWsTools. getTaxonomiesFromScientificNameStrict(java.lang.String sn, int max_taxonomies_return)
Does not return "sub-types".static java.util.List<UniProtTaxonomy>
SequenceDbWsTools. getTaxonomiesFromTaxonomyCode(java.lang.String code, int max_taxonomies_return)
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