Enum Stoichiometry.StringOverflowStrategy

    • Enum Constant Summary

      Enum Constants 
      Enum Constant Description
      CUSTOM
      The strategy is defined via an external function, we do not have to do anything.
      CYCLE
      Cycle through the alphabet (e.g., ...xyzABC...)
      DOUBLE
      Represent every cluster with two symbols from the alphabet, this forces us to specify number of subunits for every subunit (e.g., AA1AB1AC1...).
      QUESTIONMARK
      Put '?' symbol for every (alphabet.length+i)-th cluster
    • Method Summary

      All Methods Static Methods Concrete Methods 
      Modifier and Type Method Description
      static Stoichiometry.StringOverflowStrategy valueOf​(java.lang.String name)
      Returns the enum constant of this type with the specified name.
      static Stoichiometry.StringOverflowStrategy[] values()
      Returns an array containing the constants of this enum type, in the order they are declared.
      • Methods inherited from class java.lang.Enum

        clone, compareTo, equals, finalize, getDeclaringClass, hashCode, name, ordinal, toString, valueOf
      • Methods inherited from class java.lang.Object

        getClass, notify, notifyAll, wait, wait, wait
    • Enum Constant Detail

      • DOUBLE

        public static final Stoichiometry.StringOverflowStrategy DOUBLE
        Represent every cluster with two symbols from the alphabet, this forces us to specify number of subunits for every subunit (e.g., AA1AB1AC1...). This strategy will not work correctly if there are more than alphabet.length^2 subunit clusters.
    • Method Detail

      • values

        public static Stoichiometry.StringOverflowStrategy[] values()
        Returns an array containing the constants of this enum type, in the order they are declared. This method may be used to iterate over the constants as follows:
        for (Stoichiometry.StringOverflowStrategy c : Stoichiometry.StringOverflowStrategy.values())
            System.out.println(c);
        
        Returns:
        an array containing the constants of this enum type, in the order they are declared
      • valueOf

        public static Stoichiometry.StringOverflowStrategy valueOf​(java.lang.String name)
        Returns the enum constant of this type with the specified name. The string must match exactly an identifier used to declare an enum constant in this type. (Extraneous whitespace characters are not permitted.)
        Parameters:
        name - the name of the enum constant to be returned.
        Returns:
        the enum constant with the specified name
        Throws:
        java.lang.IllegalArgumentException - if this enum type has no constant with the specified name
        java.lang.NullPointerException - if the argument is null