Class FastaSequenceParser
- java.lang.Object
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- org.biojava.nbio.core.sequence.io.FastaSequenceParser
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- All Implemented Interfaces:
SequenceParserInterface
public class FastaSequenceParser extends java.lang.Object implements SequenceParserInterface
Used to parse a stream of a fasta file to get the sequence- Author:
- Scooter Willis
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Constructor Summary
Constructors Constructor Description FastaSequenceParser()
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Method Summary
All Methods Instance Methods Concrete Methods Modifier and Type Method Description java.lang.String
getSequence(java.io.BufferedReader bufferedReader, int sequenceLength)
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Method Detail
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getSequence
public java.lang.String getSequence(java.io.BufferedReader bufferedReader, int sequenceLength) throws java.io.IOException
- Specified by:
getSequence
in interfaceSequenceParserInterface
- Returns:
- Throws:
java.io.IOException
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