Package org.biojava.nbio.aaproperties
Class Constraints
- java.lang.Object
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- org.biojava.nbio.aaproperties.Constraints
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public class Constraints extends java.lang.Object
This class is used to support the implementation of properties stated in IPeptideProperties. It initializes several values that would be needed for the computation of properties such as Molecular weight
Instability index
Hydropathy value
pKa- Version:
- 2011.05.21
- Author:
- kohchuanhock
- See Also:
IPeptideProperties
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Field Summary
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Constructor Summary
Constructors Constructor Description Constraints()
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Method Summary
All Methods Static Methods Concrete Methods Modifier and Type Method Description static void
initExtinctionCoefficient()
Does the initialization of extinction coefficient based on http://au.expasy.org/tools/protparam-doc.htmlstatic void
initMolecularWeight()
Does the initialization of molecular weights based on http://au.expasy.org/tools/findmod/findmod_masses.html#AA
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Field Detail
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A
public static AminoAcidCompound A
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R
public static AminoAcidCompound R
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N
public static AminoAcidCompound N
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D
public static AminoAcidCompound D
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C
public static AminoAcidCompound C
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E
public static AminoAcidCompound E
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Q
public static AminoAcidCompound Q
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G
public static AminoAcidCompound G
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H
public static AminoAcidCompound H
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I
public static AminoAcidCompound I
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L
public static AminoAcidCompound L
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K
public static AminoAcidCompound K
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M
public static AminoAcidCompound M
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F
public static AminoAcidCompound F
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P
public static AminoAcidCompound P
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S
public static AminoAcidCompound S
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T
public static AminoAcidCompound T
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W
public static AminoAcidCompound W
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Y
public static AminoAcidCompound Y
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V
public static AminoAcidCompound V
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aa2ExtinctionCoefficient
public static java.util.Map<AminoAcidCompound,java.lang.Double> aa2ExtinctionCoefficient
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aa2MolecularWeight
public static java.util.Map<AminoAcidCompound,java.lang.Double> aa2MolecularWeight
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aa2Hydrophathicity
public static java.util.Map<AminoAcidCompound,java.lang.Double> aa2Hydrophathicity
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aa2PKa
public static java.util.Map<AminoAcidCompound,java.lang.Double> aa2PKa
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diAA2Instability
public static java.util.Map<java.lang.String,java.lang.Double> diAA2Instability
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aa2NTerminalPka
public static java.util.Map<AminoAcidCompound,java.lang.Double> aa2NTerminalPka
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aa2CTerminalPka
public static java.util.Map<AminoAcidCompound,java.lang.Double> aa2CTerminalPka
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Method Detail
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initMolecularWeight
public static void initMolecularWeight()
Does the initialization of molecular weights based on http://au.expasy.org/tools/findmod/findmod_masses.html#AA
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initExtinctionCoefficient
public static void initExtinctionCoefficient()
Does the initialization of extinction coefficient based on http://au.expasy.org/tools/protparam-doc.html
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