Uses of Class
org.forester.archaeopteryx.TreePanel
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Packages that use TreePanel Package Description org.forester.analysis org.forester.archaeopteryx org.forester.archaeopteryx.phylogeny.data org.forester.archaeopteryx.tools -
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Uses of TreePanel in org.forester.analysis
Constructors in org.forester.analysis with parameters of type TreePanel Constructor Description TaxonomyDataManager(MainFrameApplication mf, TreePanel treepanel, Phylogeny phy)
TaxonomyDataManager(MainFrameApplication mf, TreePanel treepanel, Phylogeny phy, boolean delete, boolean allow_simple_name)
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Uses of TreePanel in org.forester.archaeopteryx
Methods in org.forester.archaeopteryx that return TreePanel Modifier and Type Method Description TreePanel
MainPanel. getCurrentTreePanel()
Methods in org.forester.archaeopteryx with parameters of type TreePanel Modifier and Type Method Description static java.lang.String
TreePanelUtil. createUriForSeqWeb(PhylogenyNode node, Configuration conf, TreePanel tp)
static java.util.List<java.lang.String>
TreePanelUtil. createUrisForPdbWeb(PhylogenyNode node, java.util.List<Accession> pdb_accs, Configuration configuration, TreePanel treePanel)
static void
AptxUtil. writePhylogenyToGraphicsFileNonInteractive(java.io.File outfile, int width, int height, TreePanel tree_panel, org.forester.archaeopteryx.ControlPanel ac, AptxUtil.GraphicsExportType type, Options options)
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Uses of TreePanel in org.forester.archaeopteryx.phylogeny.data
Methods in org.forester.archaeopteryx.phylogeny.data with parameters of type TreePanel Modifier and Type Method Description void
RenderableDomainArchitecture. render(float x1, float y1, java.awt.Graphics2D g, TreePanel tree_panel, boolean to_pdf)
void
RenderableMsaSequence. render(float x1, float y1, java.awt.Graphics2D g, TreePanel tree_panel, boolean to_pdf)
void
RenderablePhylogenyData. render(float x, float y, java.awt.Graphics2D g, TreePanel tree_panel, boolean to_pdf)
This can be used to render phylogeny data as graphics (for example, display of the domain structure).void
RenderableVector. render(float x1, float y1, java.awt.Graphics2D g, TreePanel tree_panel, boolean to_pdf)
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Uses of TreePanel in org.forester.archaeopteryx.tools
Methods in org.forester.archaeopteryx.tools with parameters of type TreePanel Modifier and Type Method Description static void
Blast. openNcbiBlastWeb(java.lang.String query, boolean is_nucleic_acids, javax.swing.JApplet applet, TreePanel p)
Constructors in org.forester.archaeopteryx.tools with parameters of type TreePanel Constructor Description AncestralTaxonomyInferrer(MainFrame mf, TreePanel treepanel, Phylogeny phy)
ImageLoader(TreePanel tp)
SequenceDataRetriver(MainFrameApplication mf, TreePanel treepanel, Phylogeny phy)
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