Class GetRepresentatives


  • public class GetRepresentatives
    extends java.lang.Object
    TODO Move this to Representatives.
    • Method Summary

      All Methods Static Methods Concrete Methods 
      Modifier and Type Method Description
      static java.util.SortedSet<java.lang.String> getAll()
      Returns the current list of all PDB IDs.
      static java.util.SortedSet<StructureName> getRepresentatives​(int sequenceIdentity)
      Returns a representative set of PDB protein chains at the specified sequence identity cutoff.
      • Methods inherited from class java.lang.Object

        clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
    • Constructor Detail

      • GetRepresentatives

        public GetRepresentatives()
    • Method Detail

      • getRepresentatives

        public static java.util.SortedSet<StructureName> getRepresentatives​(int sequenceIdentity)
        Returns a representative set of PDB protein chains at the specified sequence identity cutoff. See http://www.pdb.org/pdb/statistics/clusterStatistics.do for more information.
        Parameters:
        sequenceIdentity - sequence identity threshold
        Returns:
        PdbChainKey set of representatives
      • getAll

        public static java.util.SortedSet<java.lang.String> getAll()
        Returns the current list of all PDB IDs.
        Returns:
        PdbChainKey set of all PDB IDs.