public class GraphComponentOrderDetector extends java.lang.Object implements OrderDetector
The order reported is the one that maximizes the number of residues aligned, i.e. the highest order (component size) times the frequency of the Component.
Constructor and Description |
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GraphComponentOrderDetector() |
Modifier and Type | Method and Description |
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int |
calculateOrder(AFPChain selfAlignment,
Atom[] ca) |
public int calculateOrder(AFPChain selfAlignment, Atom[] ca) throws RefinerFailedException
calculateOrder
in interface OrderDetector
RefinerFailedException