Package org.biojava.nbio.structure.symmetry.core
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Interface Summary Interface Description QuatSymmetrySolver -
Class Summary Class Description AxisAligner C2RotationSolver ChainClusterer Wraps a sequence clustering with structural informationClusterMerger Merges clusters based on their sequence identity.ClusterProteinChains Clusters the chains of one or two structures by sequence.HelicalRepeatUnit Helix HelixAxisAligner HelixExtender HelixLayers HelixSolver PairwiseAlignment PermutationGroup ProteinChainExtractor Extracts information about all the chains in a structure, including chain Ids, sequences, and atoms.ProteinSequenceClusterer Represents a set of non-identical protein sequences.QuatSuperpositionScorer QuatSymmetryDetector Detects global and local quaternary protein structure symmetry in a structure.QuatSymmetryParameters QuatSymmetryResults Holds the results of quaternary symmetry perception.QuatSymmetryScores Rotation RotationAxisAligner RotationGroup RotationSolver SequenceAlignmentCluster Represents a cluster of equivalent sequencesSubunitGraph Subunits A bean to represent info about the set of subunits being considered for a QuatSymmetryDetector alignment.SystematicSolver UniqueSequenceList Bean for a single sequence.