Class PlainFastaHeaderParser<S extends AbstractSequence<C>,​C extends Compound>

  • All Implemented Interfaces:
    SequenceHeaderParserInterface<S,​C>

    public class PlainFastaHeaderParser<S extends AbstractSequence<C>,​C extends Compound>
    extends java.lang.Object
    implements SequenceHeaderParserInterface<S,​C>
    The plain fasta header takes everything in the header as a single entity. It is useful for non-standard header formats that don't follow a single rule.
    If the user has a custom header with local data that is kept constant all over the data then they can create their own implementation of a FastaHeaderParserInterface
    Since:
    3.0.6
    Author:
    Amr AL-Hossary
    • Method Summary

      All Methods Instance Methods Concrete Methods 
      Modifier and Type Method Description
      void parseHeader​(java.lang.String header, S sequence)
      Parse the header and set the values in the sequence
      • Methods inherited from class java.lang.Object

        clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
    • Constructor Detail

      • PlainFastaHeaderParser

        public PlainFastaHeaderParser()