Class CESymmParameters

    • Field Detail

      • DEFAULT_SYMMETRY_THRESHOLD

        public static final double DEFAULT_SYMMETRY_THRESHOLD
        See Also:
        Constant Field Values
    • Constructor Detail

      • CESymmParameters

        public CESymmParameters()
    • Method Detail

      • clone

        public CESymmParameters clone()
        Overrides:
        clone in class java.lang.Object
      • setRefineResult

        @Deprecated
        public void setRefineResult​(boolean doRefine)
        Deprecated.
      • setUserOrder

        public void setUserOrder​(java.lang.Integer userOrder)
      • getUserOrder

        public int getUserOrder()
      • setMaxSymmOrder

        public void setMaxSymmOrder​(java.lang.Integer maxSymmOrder)
      • getMaxSymmOrder

        public int getMaxSymmOrder()
      • getOptimization

        public boolean getOptimization()
      • setOptimization

        public void setOptimization​(java.lang.Boolean optimization)
      • getRndSeed

        public int getRndSeed()
      • setRndSeed

        public void setRndSeed​(java.lang.Integer seed)
      • getSymmLevels

        public int getSymmLevels()
      • setSymmLevels

        public void setSymmLevels​(java.lang.Integer symmLevels)
      • getUnrefinedScoreThreshold

        public double getUnrefinedScoreThreshold()
      • setUnrefinedScoreThreshold

        public void setUnrefinedScoreThreshold​(java.lang.Double unrefinedScoreThreshold)
      • getRefinedScoreThreshold

        public double getRefinedScoreThreshold()
      • setRefinedScoreThreshold

        public void setRefinedScoreThreshold​(java.lang.Double refinedScoreThreshold)
      • getSSEThreshold

        public int getSSEThreshold()
      • setSSEThreshold

        public void setSSEThreshold​(java.lang.Integer sseThreshold)
      • getMinCoreLength

        public int getMinCoreLength()
      • setMinCoreLength

        public void setMinCoreLength​(java.lang.Integer minCoreLength)
      • getDistanceCutoff

        public double getDistanceCutoff()
      • setDistanceCutoff

        public void setDistanceCutoff​(java.lang.Double distanceCutoff)
      • isGaps

        public boolean isGaps()
      • setGaps

        public void setGaps​(java.lang.Boolean gaps)
      • getOptimizationSteps

        public int getOptimizationSteps()
      • setOptimizationSteps

        public void setOptimizationSteps​(java.lang.Integer optimizationSteps)