Class SecStrucInfo
- java.lang.Object
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- org.biojava.nbio.structure.secstruc.SecStrucInfo
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- Direct Known Subclasses:
SecStrucState
public class SecStrucInfo extends java.lang.Object
Container for the secondary structure information of a single residue. This class is designed to be stored inside an Amino Acid object. It can also contain a back-reference to its parent AA.- Since:
- 4.1.1
- Author:
- Aleix Lafita
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Field Summary
Fields Modifier and Type Field Description protected java.lang.String
assignment
static java.lang.String
BIOJAVA_ASSIGNMENT
Secondary strucuture calculated and assigned by DSSP of BioJavastatic java.lang.String
DSSP_ASSIGNMENT
Secondary strucuture parsed from a DSSP output fileprotected Group
parent
static java.lang.String
PDB_AUTHOR_ASSIGNMENT
Secondary strucuture assigned by the PDB authorprotected SecStrucType
type
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Constructor Summary
Constructors Constructor Description SecStrucInfo(Group g, java.lang.String ass, SecStrucType t)
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Method Summary
All Methods Instance Methods Concrete Methods Modifier and Type Method Description boolean
equals(java.lang.Object o)
java.lang.String
getAssignment()
Group
getGroup()
SecStrucType
getType()
void
setType(SecStrucType t)
java.lang.String
toString()
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Field Detail
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PDB_AUTHOR_ASSIGNMENT
public static final java.lang.String PDB_AUTHOR_ASSIGNMENT
Secondary strucuture assigned by the PDB author- See Also:
- Constant Field Values
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DSSP_ASSIGNMENT
public static final java.lang.String DSSP_ASSIGNMENT
Secondary strucuture parsed from a DSSP output file- See Also:
- Constant Field Values
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BIOJAVA_ASSIGNMENT
public static final java.lang.String BIOJAVA_ASSIGNMENT
Secondary strucuture calculated and assigned by DSSP of BioJava- See Also:
- Constant Field Values
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type
protected SecStrucType type
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assignment
protected java.lang.String assignment
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parent
protected Group parent
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Constructor Detail
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SecStrucInfo
public SecStrucInfo(Group g, java.lang.String ass, SecStrucType t)
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Method Detail
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getType
public SecStrucType getType()
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setType
public void setType(SecStrucType t)
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getAssignment
public java.lang.String getAssignment()
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getGroup
public Group getGroup()
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toString
public java.lang.String toString()
- Overrides:
toString
in classjava.lang.Object
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equals
public boolean equals(java.lang.Object o)
- Overrides:
equals
in classjava.lang.Object
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