Class FeatureHelper


  • public class FeatureHelper
    extends java.lang.Object
    Author:
    Scooter Willis
    • Constructor Summary

      Constructors 
      Constructor Description
      FeatureHelper()  
    • Method Summary

      All Methods Static Methods Concrete Methods 
      Modifier and Type Method Description
      static java.util.LinkedHashMap<java.lang.String,​FeatureList> buildFeatureAtrributeIndex​(java.lang.String attribute, FeatureList list)
      Build a list of individual features to allow easy indexing and to avoid iterating through large genome gff3 files The index for the returned HashMap is the value of the attribute used to build the index
      • Methods inherited from class java.lang.Object

        clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
    • Constructor Detail

      • FeatureHelper

        public FeatureHelper()
    • Method Detail

      • buildFeatureAtrributeIndex

        public static java.util.LinkedHashMap<java.lang.String,​FeatureList> buildFeatureAtrributeIndex​(java.lang.String attribute,
                                                                                                             FeatureList list)
        Build a list of individual features to allow easy indexing and to avoid iterating through large genome gff3 files The index for the returned HashMap is the value of the attribute used to build the index
        Parameters:
        attribute -
        list -
        Returns: