Class AlignmentCalc

  • All Implemented Interfaces:
    java.lang.Runnable, AlignmentCalculationRunnable

    public class AlignmentCalc
    extends java.lang.Object
    implements AlignmentCalculationRunnable
    A class that obtains two structures via DAS and aligns them This is done in a separate thread. It is possible to register Event listeners to get notification of when the download has finished.
    Since:
    1.7
    Version:
    %I% %G%
    Author:
    Andreas Prlic
    • Method Summary

      All Methods Instance Methods Concrete Methods 
      Modifier and Type Method Description
      void cleanup()  
      void interrupt()
      stops what is currently happening and does not continue
      void run()  
      void setNrCPUs​(int useNrCPUs)
      does not do anything here...
      • Methods inherited from class java.lang.Object

        clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
    • Constructor Detail

      • AlignmentCalc

        public AlignmentCalc​(AlignmentGui parent,
                             Structure s1,
                             Structure s2,
                             java.lang.String name1,
                             java.lang.String name2)
        requests an alignment of pdb1 vs pdb 2. Chain 1 and chain2 are optional. If they are empty strings, they are ignored
        Parameters:
        parent - the alignment gui frame that interacts with this class
        s1 - structure 1
        s2 - structure 2