Class PairwiseAlignment
- java.lang.Object
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- org.biojava.nbio.structure.symmetry.core.PairwiseAlignment
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public class PairwiseAlignment extends java.lang.Object
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Constructor Summary
Constructors Constructor Description PairwiseAlignment(SequenceAlignmentCluster cluster1, SequenceAlignmentCluster cluster2)
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Method Summary
All Methods Instance Methods Concrete Methods Modifier and Type Method Description int[][][]
getAlignment()
double
getAlignmentLengthFraction()
SequenceAlignmentCluster
getCluster1()
SequenceAlignmentCluster
getCluster2()
double
getRmsd()
double
getSequenceIdentity()
void
setAlignment(int[][][] alignment)
void
setAlignmentLengthFraction(double alignmentLengthFraction)
void
setRmsd(double rmsd)
void
setSequenceIdentity(double sequenceIdentity)
java.lang.String
toString()
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Constructor Detail
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PairwiseAlignment
public PairwiseAlignment(SequenceAlignmentCluster cluster1, SequenceAlignmentCluster cluster2)
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Method Detail
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getCluster1
public SequenceAlignmentCluster getCluster1()
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getCluster2
public SequenceAlignmentCluster getCluster2()
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getAlignmentLengthFraction
public double getAlignmentLengthFraction()
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getSequenceIdentity
public double getSequenceIdentity()
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getRmsd
public double getRmsd()
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getAlignment
public int[][][] getAlignment()
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setAlignmentLengthFraction
public void setAlignmentLengthFraction(double alignmentLengthFraction)
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setSequenceIdentity
public void setSequenceIdentity(double sequenceIdentity)
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setRmsd
public void setRmsd(double rmsd)
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setAlignment
public void setAlignment(int[][][] alignment)
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toString
public java.lang.String toString()
- Overrides:
toString
in classjava.lang.Object
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