Class PDBBioAssemblyParser


  • public class PDBBioAssemblyParser
    extends java.lang.Object
    Parses REMARK 350 records in a PDB file and creates transformations to construct the quaternary structure of a protein from an asymmetric unit
    Author:
    Peter Rose, Andreas Prlic
    • Constructor Detail

      • PDBBioAssemblyParser

        public PDBBioAssemblyParser()
    • Method Detail

      • pdb_REMARK_350_Handler

        public void pdb_REMARK_350_Handler​(java.lang.String line)
        Parses REMARK 350 line. See format description: http://www.wwpdb.org/documentation/format33/remarks2.html
        Parameters:
        line -
      • getTransformationMap

        public java.util.Map<java.lang.Integer,​BioAssemblyInfo> getTransformationMap()
        Returns a map of bioassembly transformations
        Returns: