public interface Msa
Modifier and Type | Method and Description |
---|---|
java.util.List<java.lang.Character> |
getColumnAt(int col) |
java.lang.Object |
getIdentifier(int row) |
int |
getLength() |
int |
getNumberOfSequences() |
char |
getResidueAt(int row,
int col) |
java.lang.StringBuffer |
getSequenceAsString(int row) |
Sequence.TYPE |
getType() |
void |
setIdentifier(int row,
java.lang.Object identifier) |
void |
setResidueAt(int row,
int col,
char residue) |
void |
write(java.io.Writer w) |
java.lang.Object getIdentifier(int row)
void setIdentifier(int row, java.lang.Object identifier)
int getLength()
int getNumberOfSequences()
char getResidueAt(int row, int col)
java.util.List<java.lang.Character> getColumnAt(int col)
java.lang.StringBuffer getSequenceAsString(int row)
Sequence.TYPE getType()
void setResidueAt(int row, int col, char residue)
void write(java.io.Writer w) throws java.io.IOException
java.io.IOException