public class AligPanel extends JPrintPanel implements AlignmentPositionListener, java.awt.event.WindowListener
javax.swing.JPanel.AccessibleJPanel
javax.swing.JComponent.AccessibleJComponent
accessibleContext, listenerList, TOOL_TIP_TEXT_KEY, ui, UNDEFINED_CONDITION, WHEN_ANCESTOR_OF_FOCUSED_COMPONENT, WHEN_FOCUSED, WHEN_IN_FOCUSED_WINDOW
Constructor and Description |
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AligPanel() |
Modifier and Type | Method and Description |
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void |
actionPerformed(java.awt.event.ActionEvent e) |
void |
addAlignmentPositionListener(AlignmentPositionListener li) |
void |
destroy() |
AFPChain |
getAFPChain() |
Atom[] |
getCa1() |
Atom[] |
getCa2() |
AFPChainCoordManager |
getCoordManager() |
static void |
main(java.lang.String[] args) |
void |
mouseOverPosition(AlignedPosition p) |
void |
paintComponent(java.awt.Graphics g) |
void |
positionSelected(AlignedPosition p) |
void |
rangeSelected(AlignedPosition start,
AlignedPosition end) |
void |
selectionLocked() |
void |
selectionUnlocked() |
void |
setAFPChain(AFPChain afpChain) |
void |
setCa1(Atom[] ca1) |
void |
setCa2(Atom[] ca2) |
void |
setStructureAlignmentJmol(StructureAlignmentJmol jmol) |
void |
toggleSelection(AlignedPosition p) |
void |
windowActivated(java.awt.event.WindowEvent e) |
void |
windowClosed(java.awt.event.WindowEvent e) |
void |
windowClosing(java.awt.event.WindowEvent e) |
void |
windowDeactivated(java.awt.event.WindowEvent e) |
void |
windowDeiconified(java.awt.event.WindowEvent e) |
void |
windowIconified(java.awt.event.WindowEvent e) |
void |
windowOpened(java.awt.event.WindowEvent e) |
print
getAccessibleContext, getUI, getUIClassID, paramString, setUI, updateUI
addAncestorListener, addNotify, addVetoableChangeListener, computeVisibleRect, contains, createToolTip, disable, enable, firePropertyChange, firePropertyChange, firePropertyChange, fireVetoableChange, getActionForKeyStroke, getActionMap, getAlignmentX, getAlignmentY, getAncestorListeners, getAutoscrolls, getBaseline, getBaselineResizeBehavior, getBorder, getBounds, getClientProperty, getComponentGraphics, getComponentPopupMenu, getConditionForKeyStroke, getDebugGraphicsOptions, getDefaultLocale, getFontMetrics, getGraphics, getHeight, getInheritsPopupMenu, getInputMap, getInputMap, getInputVerifier, getInsets, getInsets, getListeners, getLocation, getMaximumSize, getMinimumSize, getNextFocusableComponent, getPopupLocation, getPreferredSize, getRegisteredKeyStrokes, getRootPane, getSize, getToolTipLocation, getToolTipText, getToolTipText, getTopLevelAncestor, getTransferHandler, getVerifyInputWhenFocusTarget, getVetoableChangeListeners, getVisibleRect, getWidth, getX, getY, grabFocus, hide, isDoubleBuffered, isLightweightComponent, isManagingFocus, isOpaque, isOptimizedDrawingEnabled, isPaintingForPrint, isPaintingOrigin, isPaintingTile, isRequestFocusEnabled, isValidateRoot, paint, paintBorder, paintChildren, paintImmediately, paintImmediately, print, printAll, printBorder, printChildren, printComponent, processComponentKeyEvent, processKeyBinding, processKeyEvent, processMouseEvent, processMouseMotionEvent, putClientProperty, registerKeyboardAction, registerKeyboardAction, removeAncestorListener, removeNotify, removeVetoableChangeListener, repaint, repaint, requestDefaultFocus, requestFocus, requestFocus, requestFocusInWindow, requestFocusInWindow, resetKeyboardActions, reshape, revalidate, scrollRectToVisible, setActionMap, setAlignmentX, setAlignmentY, setAutoscrolls, setBackground, setBorder, setComponentPopupMenu, setDebugGraphicsOptions, setDefaultLocale, setDoubleBuffered, setEnabled, setFocusTraversalKeys, setFont, setForeground, setInheritsPopupMenu, setInputMap, setInputVerifier, setMaximumSize, setMinimumSize, setNextFocusableComponent, setOpaque, setPreferredSize, setRequestFocusEnabled, setToolTipText, setTransferHandler, setUI, setVerifyInputWhenFocusTarget, setVisible, unregisterKeyboardAction, update
add, add, add, add, add, addContainerListener, addImpl, addPropertyChangeListener, addPropertyChangeListener, applyComponentOrientation, areFocusTraversalKeysSet, countComponents, deliverEvent, doLayout, findComponentAt, findComponentAt, getComponent, getComponentAt, getComponentAt, getComponentCount, getComponents, getComponentZOrder, getContainerListeners, getFocusTraversalKeys, getFocusTraversalPolicy, getLayout, getMousePosition, insets, invalidate, isAncestorOf, isFocusCycleRoot, isFocusCycleRoot, isFocusTraversalPolicyProvider, isFocusTraversalPolicySet, layout, list, list, locate, minimumSize, paintComponents, preferredSize, printComponents, processContainerEvent, processEvent, remove, remove, removeAll, removeContainerListener, setComponentZOrder, setFocusCycleRoot, setFocusTraversalPolicy, setFocusTraversalPolicyProvider, setLayout, transferFocusDownCycle, validate, validateTree
action, add, addComponentListener, addFocusListener, addHierarchyBoundsListener, addHierarchyListener, addInputMethodListener, addKeyListener, addMouseListener, addMouseMotionListener, addMouseWheelListener, bounds, checkImage, checkImage, coalesceEvents, contains, createImage, createImage, createVolatileImage, createVolatileImage, disableEvents, dispatchEvent, enable, enableEvents, enableInputMethods, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, getBackground, getBounds, getColorModel, getComponentListeners, getComponentOrientation, getCursor, getDropTarget, getFocusCycleRootAncestor, getFocusListeners, getFocusTraversalKeysEnabled, getFont, getForeground, getGraphicsConfiguration, getHierarchyBoundsListeners, getHierarchyListeners, getIgnoreRepaint, getInputContext, getInputMethodListeners, getInputMethodRequests, getKeyListeners, getLocale, getLocation, getLocationOnScreen, getMouseListeners, getMouseMotionListeners, getMousePosition, getMouseWheelListeners, getName, getParent, getPeer, getPropertyChangeListeners, getPropertyChangeListeners, getSize, getToolkit, getTreeLock, gotFocus, handleEvent, hasFocus, imageUpdate, inside, isBackgroundSet, isCursorSet, isDisplayable, isEnabled, isFocusable, isFocusOwner, isFocusTraversable, isFontSet, isForegroundSet, isLightweight, isMaximumSizeSet, isMinimumSizeSet, isPreferredSizeSet, isShowing, isValid, isVisible, keyDown, keyUp, list, list, list, location, lostFocus, mouseDown, mouseDrag, mouseEnter, mouseExit, mouseMove, mouseUp, move, nextFocus, paintAll, postEvent, prepareImage, prepareImage, processComponentEvent, processFocusEvent, processHierarchyBoundsEvent, processHierarchyEvent, processInputMethodEvent, processMouseWheelEvent, remove, removeComponentListener, removeFocusListener, removeHierarchyBoundsListener, removeHierarchyListener, removeInputMethodListener, removeKeyListener, removeMouseListener, removeMouseMotionListener, removeMouseWheelListener, removePropertyChangeListener, removePropertyChangeListener, repaint, repaint, repaint, resize, resize, setBounds, setBounds, setComponentOrientation, setCursor, setDropTarget, setFocusable, setFocusTraversalKeysEnabled, setIgnoreRepaint, setLocale, setLocation, setLocation, setName, setSize, setSize, show, show, size, toString, transferFocus, transferFocusBackward, transferFocusUpCycle
public static void main(java.lang.String[] args)
public AFPChainCoordManager getCoordManager()
public void addAlignmentPositionListener(AlignmentPositionListener li)
public void destroy()
public AFPChain getAFPChain()
public void setAFPChain(AFPChain afpChain)
public void paintComponent(java.awt.Graphics g)
paintComponent
in class javax.swing.JComponent
public void mouseOverPosition(AlignedPosition p)
mouseOverPosition
in interface AlignmentPositionListener
public void positionSelected(AlignedPosition p)
positionSelected
in interface AlignmentPositionListener
public void rangeSelected(AlignedPosition start, AlignedPosition end)
rangeSelected
in interface AlignmentPositionListener
public void selectionLocked()
selectionLocked
in interface AlignmentPositionListener
public void selectionUnlocked()
selectionUnlocked
in interface AlignmentPositionListener
public void toggleSelection(AlignedPosition p)
toggleSelection
in interface AlignmentPositionListener
public void setStructureAlignmentJmol(StructureAlignmentJmol jmol)
public void windowActivated(java.awt.event.WindowEvent e)
windowActivated
in interface java.awt.event.WindowListener
public void windowClosed(java.awt.event.WindowEvent e)
windowClosed
in interface java.awt.event.WindowListener
public void windowClosing(java.awt.event.WindowEvent e)
windowClosing
in interface java.awt.event.WindowListener
public void windowDeactivated(java.awt.event.WindowEvent e)
windowDeactivated
in interface java.awt.event.WindowListener
public void windowDeiconified(java.awt.event.WindowEvent e)
windowDeiconified
in interface java.awt.event.WindowListener
public void windowIconified(java.awt.event.WindowEvent e)
windowIconified
in interface java.awt.event.WindowListener
public void windowOpened(java.awt.event.WindowEvent e)
windowOpened
in interface java.awt.event.WindowListener
public void actionPerformed(java.awt.event.ActionEvent e)
actionPerformed
in interface java.awt.event.ActionListener
actionPerformed
in class JPrintPanel
public Atom[] getCa1()
public void setCa1(Atom[] ca1)
public Atom[] getCa2()
public void setCa2(Atom[] ca2)