public class StructureAlignmentJmol
extends java.lang.Object
implements java.awt.event.MouseMotionListener, java.awt.event.MouseListener, java.awt.event.WindowListener, java.awt.event.ActionListener
Modifier and Type | Field and Description |
---|---|
protected static java.lang.String |
COMMAND_LINE_HELP |
static java.lang.String |
DEFAULT_SCRIPT |
Constructor and Description |
---|
StructureAlignmentJmol() |
StructureAlignmentJmol(AFPChain afpChain,
Atom[] ca1,
Atom[] ca2) |
Modifier and Type | Method and Description |
---|---|
void |
actionPerformed(java.awt.event.ActionEvent e) |
void |
destroy() |
void |
evalString(java.lang.String rasmolScript) |
JmolPanel |
getJmolPanel() |
static java.lang.String |
getJmolScript4Block(AFPChain afpChain,
Atom[] ca1,
Atom[] ca2,
int blockNr) |
static java.lang.String |
getJmolString(AFPChain afpChain,
Atom[] ca1,
Atom[] ca2) |
Structure |
getStructure() |
java.lang.String |
getTitle() |
static void |
main(java.lang.String[] args) |
void |
mouseClicked(java.awt.event.MouseEvent e) |
void |
mouseDragged(java.awt.event.MouseEvent e) |
void |
mouseEntered(java.awt.event.MouseEvent e) |
void |
mouseExited(java.awt.event.MouseEvent e) |
void |
mouseMoved(java.awt.event.MouseEvent e) |
void |
mousePressed(java.awt.event.MouseEvent e) |
void |
mouseReleased(java.awt.event.MouseEvent e) |
void |
resetDisplay() |
void |
setAtoms(Atom[] atoms) |
void |
setJmolPanel(JmolPanel jmolPanel) |
void |
setStructure(Structure s) |
void |
setTitle(java.lang.String label) |
void |
windowActivated(java.awt.event.WindowEvent e) |
void |
windowClosed(java.awt.event.WindowEvent e) |
void |
windowClosing(java.awt.event.WindowEvent e) |
void |
windowDeactivated(java.awt.event.WindowEvent e) |
void |
windowDeiconified(java.awt.event.WindowEvent e) |
void |
windowIconified(java.awt.event.WindowEvent e) |
void |
windowOpened(java.awt.event.WindowEvent e) |
protected static final java.lang.String COMMAND_LINE_HELP
public static final java.lang.String DEFAULT_SCRIPT
public static void main(java.lang.String[] args)
public void destroy()
public void setAtoms(Atom[] atoms)
public JmolPanel getJmolPanel()
public void setJmolPanel(JmolPanel jmolPanel)
public void evalString(java.lang.String rasmolScript)
public void setStructure(Structure s)
public Structure getStructure()
public void setTitle(java.lang.String label)
public java.lang.String getTitle()
public void mouseDragged(java.awt.event.MouseEvent e)
mouseDragged
in interface java.awt.event.MouseMotionListener
public void mouseMoved(java.awt.event.MouseEvent e)
mouseMoved
in interface java.awt.event.MouseMotionListener
public void mouseClicked(java.awt.event.MouseEvent e)
mouseClicked
in interface java.awt.event.MouseListener
public void mouseEntered(java.awt.event.MouseEvent e)
mouseEntered
in interface java.awt.event.MouseListener
public void mouseExited(java.awt.event.MouseEvent e)
mouseExited
in interface java.awt.event.MouseListener
public void mousePressed(java.awt.event.MouseEvent e)
mousePressed
in interface java.awt.event.MouseListener
public void mouseReleased(java.awt.event.MouseEvent e)
mouseReleased
in interface java.awt.event.MouseListener
public void windowActivated(java.awt.event.WindowEvent e)
windowActivated
in interface java.awt.event.WindowListener
public void windowClosed(java.awt.event.WindowEvent e)
windowClosed
in interface java.awt.event.WindowListener
public void windowClosing(java.awt.event.WindowEvent e)
windowClosing
in interface java.awt.event.WindowListener
public void windowDeactivated(java.awt.event.WindowEvent e)
windowDeactivated
in interface java.awt.event.WindowListener
public void windowDeiconified(java.awt.event.WindowEvent e)
windowDeiconified
in interface java.awt.event.WindowListener
public void windowIconified(java.awt.event.WindowEvent e)
windowIconified
in interface java.awt.event.WindowListener
public void windowOpened(java.awt.event.WindowEvent e)
windowOpened
in interface java.awt.event.WindowListener
public void actionPerformed(java.awt.event.ActionEvent e)
actionPerformed
in interface java.awt.event.ActionListener
public static java.lang.String getJmolString(AFPChain afpChain, Atom[] ca1, Atom[] ca2)
public static java.lang.String getJmolScript4Block(AFPChain afpChain, Atom[] ca1, Atom[] ca2, int blockNr)
public void resetDisplay()