Package: abs-guide Description-md5: c70e528b8b624e5738bdbd1b89e8b349 Description-en: The Advanced Bash-Scripting Guide An in-depth exploration of the art of shell scripting. . This tutorial assumes no previous knowledge of scripting or programming, but progresses rapidly toward an intermediate/advanced level of instruction ... all the while sneaking in little snippets of UNIX(R) wisdom and lore. It serves as a textbook, a manual for self-study, and a reference and source of knowledge on shell scripting techniques. The exercises and heavily-commented examples invite active reader participation, under the premise that the only way to really learn scripting is to write scripts. . This book is suitable for classroom use as a general introduction to programming concepts. Package: autodir Description-md5: 0b6913d4b30fa8f1270054260e535bdb Description-en: Automatically creates home and group directories for LDAP/NIS/SQL/local accounts A modular and thread-enabled tool to create and/or mounting and managing automagically and transparently user/group home directories, on demand. . It can work with any authentication framework (e.g. system files, NIS, LDAP or SQL) and does not require PAM, which is a required feature for session-less service such as smtp servers. . Automounter version 4 (autofs4) has to be enabled when compiling the kernel. Debian packaged kernels have it enabled as module. Package: ckermit Description-md5: 9281d7f0d597f7492962b9135314d699 Description-en: serial and network communications package C-Kermit is a combined serial and network communication software package offering a consistent, medium-independent, secure cross-platform approach to connection establishment, terminal sessions, file transfer, character- set translation, and automation of communication tasks. Package: clustalx Description-md5: a79728f91dcfed21b62f89dea1743319 Description-en: Multiple alignment of nucleic acid and protein sequences (graphical interface) This package offers a GUI interface for the Clustal multiple sequence alignment program. It provides an integrated environment for performing multiple sequence- and profile-alignments to analyse the results. The sequence alignment is displayed in a window on the screen. A versatile coloring scheme has been incorporated to highlight conserved features in the alignment. For professional presentations, one should use the texshade LaTeX package or boxshade. . The pull-down menus at the top of the window allow you to select all the options required for traditional multiple sequence and profile alignment. You can cut-and-paste sequences to change the order of the alignment; you can select a subset of sequences to be aligned; you can select a sub-range of the alignment to be realigned and inserted back into the original alignment. . An alignment quality analysis can be performed and low-scoring segments or exceptional residues can be highlighted. Package: darkice Description-md5: 1912539adeede843fe4a648780292b75 Description-en: Live audio streamer DarkIce is an IceCast, IceCast2 and ShoutCast live audio streamer. It takes audio input from a sound card, encodes it into mp3 and/or Ogg Vorbis, and sends the mp3 stream to one or more IceCast and/or ShoutCast servers, the Ogg Vorbis stream to one or more IceCast2 servers. DarkIce uses lame as a shared object as its mp3 encoder, and the Ogg Vorbis as its Ogg Vorbis encoder. . A legacy SYSV init script is provided for existing configurations. You have to set RUN=yes in /etc/default/darkice to run darkice as a daemon. With modern systems, this is not needed as realtime scheduling is available to normal users. Package: darksnow Description-md5: 2141573fbbeacbd9c89de6914798e19b Description-en: simple graphical user interface to darkice DarkSnow is a graphical interface written in GTK+2 for the darkice live streamer. Package: devede Description-md5: 0dfcb39897aba20751bef5c23ad113fe Description-en: simple application to create Video DVDs DeVeDe is a program to create video DVDs, suitables for home players, from any number of video files, in any of the formats supported by Mplayer. . It allows user to create subtitles and even menus. Package: dvd-slideshow Description-md5: 980a2a115f819879a10ed6533ae6f66f Description-en: set of tools to create DVD slideshows with menus DVD Slideshow consists in a set of tools which allows one to create slideshows-style videos from a collection of pictures. This package provides the following programs: * dir2slideshow: Generates a listing of the pictures in a given directory for easy input to dvd-slideshow. * dvd-slideshow: This is the main script. It generates a DVD-compatible MPEG2 video file with audio from a text file input listing of pictures and effects. * dvd-menu: Creates a simple DVD menu with buttons that link to MPEG2 files generated with dvd-slideshow or ones created by the user. * gallery1-to-slideshow: Generates a text file listing of the pictures visible in a given "Gallery" (http://gallery.sourceforge.net) photo album in order to easily pass the information to dvd_slideshow. * jigl2slideshow: Does the same thing as gallery2slideshow, but works on a jigl gallery. Package: f2j Description-md5: 166f686ad8732369697da87e1906ecd3 Description-en: Fortran to Java compiler The package contains a Fortran to Java converter, also used to create the libf2j-java package. It converts Fortran file to Java source and class files. Package: fonts-cns11643-kai Description-md5: ba10a1118a63ddf6a3e4788e30208e6f Description-en: Chinese TrueType font, TW-Kai The CNS 11643 character set (Chinese National Standard 11643), also officially known as the "Chinese Standard Interchange Code", is officially the standard character set of the Republic of China. (In practice, variants of Big5 are de facto standard.) . TW-Kai is released by RDEC, Executive Yuan, ROC. It covers the characters plane 1 to 9 defined by CNS11643. Package: fonts-cns11643-sung Description-md5: 0a0ab68df6c4d455c3b831f8ca434996 Description-en: Chinese TrueType font, TW-Sung The CNS 11643 character set (Chinese National Standard 11643), also officially known as the "Chinese Standard Interchange Code", is officially the standard character set of the Republic of China. . TW-Sung is released by RDEC, Executive Yuan, ROC. It covers the characters plane 1 to 9 defined by CNS11643. Package: gentle Description-md5: 60adf1620c650c216b9ae673b5d248ca Description-en: suite to plan genetic cloning GENtle is a software for DNA and amino acid editing, database management, plasmid maps, restriction and ligation, alignments, sequencer data import, calculators, gel image display, PCR, and much more. Package: gmerlin-encoders-extra Description-md5: a089a3a3d9dd74c3a18cdc46727d09ec Description-en: MJPEG encoders for Gmerlin Gmerlin is a multiformat media player with tree-like virtual directory structure, where you can save your files, webstreams or whatever. It handles even large media collections gracefully. Hardware devices appear also in the tree so you can open Audio-CDs, (S)VCDs, DVDs and DVB- broadcasts. . This package includes the "extra" set of Gmerlin's plugins, which contains the MJPEG encoders. Package: idjc Description-md5: c731d01af36a67579246697b05f068bc Description-en: graphical shoutcast/icecast client Internet DJ Console is an Internet radio application for making a live radio show or podcast. Features include two main media players with a crossfader, a jingle player, microphone signal processing (compressor and noise gate), IRC track announcements with X-Chat, an automatic stream shut-off timer, MP3 or Ogg streaming and recording at various bit rates, aux input for connecting external JACK aware applications, and audio level meters. Package: ipadic Description-md5: eff1ec5477c7b450aa8e1a4494f38faf Description-en: Dictionaries for ChaSen (Binary data) Dictionaries for ChaSen, a morphological analysis system to segment and tokenize Japanese text string. It provides many additional information (pronunciation, semantic information, and others). . It is based on ICOT dictionary. . This package contains architecture dependent binary data. Package: jajuk Description-md5: 19e51f9051264cf8be50536b3ba60b93 Description-en: advanced jukebox and music organizer Jajuk is software that organizes and plays music. Jajuk is designed to be intuitive, fast and provide multiple ways to perform the same operation. It is a fully-featured application geared towards advanced users with very large or scattered music collections. Package: lgeneral Description-md5: d3cd338c86e0144cd187ecea33e57ef8 Description-en: strategy game in the tradition of Panzer General LGeneral is a turn-based strategy game heavily inspired by Panzer General. You play single scenarios or whole campaigns turn by turn against a human player or the AI. . Entrenchment, rugged defense, defensive fire, surprise contacts, surrender, unit supply, weather influence, reinforcements and other implementations contribute to the tactical and strategic depth of the game. . This is the game engine only. LGeneral requires lgeneral-data or lgc-pg, which converts the game data of the original Panzer General game, to function properly. Package: libf2j-java Description-md5: 545bcec4a65e2d974a0e300c0f193fa5 Description-en: Java library port of Fortran numerical libraries The package provides the Java library (APIS) to numerical libraries originally written in Fortran (particularly BLAS and LAPACK). Package: libforms-doc Description-md5: 2d31b9908f0fcc2b4d5add43805bddf9 Description-en: Documentation for the XForms graphical interface library This package contains PDF and HTML documentation for the XForms library. Package: libjlapack-java Description-md5: 4ea83703e8aa7420f895fb1264b3ddc9 Description-en: LAPACK numerical subroutines translated from their Fortran 77 source The package provides the LAPACK numerical subroutines translated from their subset Fortran 77 source into class files, executable by the Java Virtual Machine (JVM) and for use by Java programmers. . This makes it possible for Java applications or applets, distributed on the World Wide Web to use established legacy numerical code that was originally written in Fortran. The translation is accomplished using a special purpose Fortran-to-Java (source-to-source) compiler. Package: libthrust-dev Description-md5: 5c04cf9edc908ae75dc0cc67ca840a33 Description-en: Thrust - Parallel Algorithms Library Thrust is a parallel algorithms library which resembles the C++ Standard Template Library (STL). Thrust's high-level interface greatly enhances programmer productivity while enabling performance portability between GPUs and multicore CPUs. Interoperability with established technologies (such as CUDA, TBB, and OpenMP) facilitates integration with existing software. Package: mp3diags Description-md5: 27a41b67e8f0c1d350bd807507e1bc57 Description-en: find issues in MP3 files and help to solve them MP3 Diags is a GUI-based application that allows end-users to identify issues with their MP3 files, fix some of the issues and make other changes, like adding track information. It also allows user to "look inside" an MP3 file. . Unlike some programs that are designed to deal with a single topic (like fixing VBR headers or adding cover art), MP3 Diags is a one stop solution that identifies more than 50 different issues in MP3 files and provides the means to fix many of them. . Some of the more important issues that are found: . * Broken tags / headers / audio. * Duplicate tags / headers. * Incorrect placement of tags / headers (ID3V2, ID3V1, LAME, Xing, etc). * Low quality audio. * Missing VBR header. * Missing track info / cover art. * Broken track info / cover art. * Missing normalization data. * Character encoding issues (for languages other than English). . Some of the fixes and changes that MP3 Diags can do: . * Adding / fixing track info, including album cover; information can be retrieved from several sources: Internet, clipboard, file name, local files, and (obviously) keyboard. * Correcting files that show incorrect song duration. * Correcting files in which the player cannot seek correctly. * Converting characters for non-English names. * Adding composer name to the artist field, for players that don't handle the composer field. * Renaming files based on their fields. * Changing word case for track info. Package: mp3fs Description-md5: 8f548d5affaa2e87ffd6a47cb0cd77db Description-en: FUSE filesystem for transcoding FLAC to MP3 on the fly MP3FS is a read-only FUSE filesystem which transcodes audio formats (currently FLAC) to MP3 on the fly when opened and read. . It is also a novel alternative to traditional mp3 encoder applications. Users can use their favorite file browser to select the files they want encoded and copy them somewhere. Package: qcomicbook Description-md5: 5e1e59ae80d5250683bcf393eda201bc Description-en: qt viewer for comic book archives (cbr/cbz/cba/cbg/cbb) QComicBook is a viewer for comic book archives containing jpeg/png images, which aims at convenience and simplicity. Features include: automatic decompression, full-screen mode, page scaling, mouse or keyboard navigation etc. . QComicBook for now supports archives: - cbr - rar-compressed - cbz - zip-compressed - cba - ace-compressed - cbg - targzipped - cbb - tarbzip2ped Package: r-cran-maptools Description-md5: 665811dd7df8d41ead80135dfdf5c87d Description-en: GNU R Tools for reading and handling spatial objects Set of tools for manipulating and reading geographic data, in particular ESRI shapefiles; C code used from shapelib. It includes binary access to GSHHS shoreline files. The package also provides interface wrappers for exchanging spatial objects with packages such as PBSmapping, spatstat, maps, RArcInfo, Stata tmap, WinBUGS, Mondrian, and others. Package: r-cran-surveillance Description-md5: 3206ab392e2d1549a03174efb7d99d18 Description-en: GNU R package for the Modeling and Monitoring of Epidemic Phenomena Implementation of statistical methods for the modeling and change-point detection in time series of counts, proportions and categorical data, as well as for the modeling of continuous-time epidemic phenomena, e.g., discrete-space setups such as the spatially enriched Susceptible-Exposed- Infectious-Recovered (SEIR) models, or continuous-space point process data such as the occurrence of infectious diseases. Main focus is on outbreak detection in count data time series originating from public health surveillance of communicable diseases, but applications could just as well originate from environmetrics, reliability engineering, econometrics or social sciences. . Currently, the package contains implementations of many typical outbreak detection procedures such as Farrington et al (1996), Noufaily et al (2012) or the negative binomial LR-CUSUM method described in Höhle and Paul (2008). A novel CUSUM approach combining logistic and multinomial logistic modelling is also included. Furthermore, inference methods for the retrospective infectious disease models in Held et al (2005), Held et al (2006), Paul et al (2008), Paul and Held (2011), Held and Paul (2012), and Meyer and Held (2014) are provided. . Continuous self-exciting spatio-temporal point processes are modeled through additive-multiplicative conditional intensities as described in Höhle (2009) ('twinSIR', discrete space) and Meyer et al (2012) ('twinstim', continuous space). . The package contains several real-world data sets, the ability to simulate outbreak data, visualize the results of the monitoring in temporal, spatial or spatio-temporal fashion. . Note: Using the 'boda' algorithm requires the 'INLA' package, which is available from . Package: raster3d Description-md5: 7017e40afb8a84c7aca1cff9519d06ba Description-en: tools for generating images of proteins or other molecules Raster3D is a set of tools for generating high quality raster images of proteins or other molecules. The core program renders spheres, triangles, cylinders, and quadric surfaces with specular highlighting, Phong shading, and shadowing. It uses an efficient software Z-buffer algorithm which is independent of any graphics hardware. Ancillary programs process atomic coordinates from PDB files into rendering descriptions for pictures composed of ribbons, space-filling atoms, bonds, ball+stick, etc. Raster3D can also be used to render pictures composed in other programs such as Molscript in glorious 3D with highlights, shadowing, etc. Output is to pixel image files with 24 bits of color information per pixel. Package: raster3d-doc Description-md5: c1fa8477bbb4f0ad2b3ab28130533382 Description-en: documents and example files for Raster3D Raster3D is a set of tools for generating high quality raster images of proteins or other molecules. The core program renders spheres, triangles, cylinders, and quadric surfaces with specular highlighting, Phong shading, and shadowing. It uses an efficient software Z-buffer algorithm which is independent of any graphics hardware. Ancillary programs process atomic coordinates from PDB files into rendering descriptions for pictures composed of ribbons, space-filling atoms, bonds, ball+stick, etc. Raster3D can also be used to render pictures composed in other programs such as Molscript in glorious 3D with highlights, shadowing, etc. Output is to pixel image files with 24 bits of color information per pixel. . This package contains documents and example files for the raster3d package. Package: redeclipse Description-md5: 2395a7d42130d6f9bc457b0c91a8215e Description-en: free, casual arena shooter A fun-filled, casual, first person arena shooter, built as a total conversion of Cube Engine 2, which lends itself toward a balanced gameplay, with a general theme of agility in a variety of environments. . * Cross-platform multiplayer * Features parkour, impulse boosts, dashing, and other tricks * Favourite gamemodes with an array of mutators and variables * Builtin editor lets you create your own maps cooperatively online Package: redeclipse-common Description-md5: 3942a0ed5ca578bf2ac3bc1bbc3552a9 Description-en: common config files for the Red Eclipse FPS game This package contains the common config files for the server and client of the Red Eclipse FPS game. Package: redeclipse-data Description-md5: caa768fd43b5f3008c12364205a75427 Description-en: data for the Red Eclipse FPS game This package contains the data content, e.g. maps, models, textures, sounds, etc. for the Red Eclipse FPS game. Package: redeclipse-server Description-md5: 315338a2439def5a06eb51a250e84e31 Description-en: server for the Red Eclipse FPS game This package contains the dedicated server for the Red Eclipse FPS game, it also includes some example scripts for configuring the server. It contains no init integration. Package: seaview Description-md5: 6956ccec0b723eeec1ee5d454b5a86f8 Description-en: Multiplatform interface for sequence alignment and phylogeny SeaView reads and writes various file formats (NEXUS, MSF, CLUSTAL, FASTA, PHYLIP, MASE, Newick) of DNA and protein sequences and of phylogenetic trees. Alignments can be manually edited. It drives the programs Muscle or Clustal Omega for multiple sequence alignment, and also allows one to use any external alignment algorithm able to read and write FASTA-formatted files. It computes phylogenetic trees by parsimony using PHYLIP's dnapars/protpars algorithm, by distance with NJ or BioNJ algorithms on a variety of evolutionary distances, or by maximum likelihood using the program PhyML 3.0. SeaView draws phylogenetic trees on screen or PostScript files, and allows one to download sequences from EMBL/GenBank/UniProt using the Internet. Package: spread-phy Description-md5: 3adb36b53159c17b4ca86e0ba4d0f573 Description-en: analyze and visualize phylogeographic reconstructions SPREAD is a user-friendly application to analyze and visualize phylogeographic reconstructions resulting from Bayesian inference of spatio-temporal diffusion. . There is a tutorial for SPREAD online at http://www.kuleuven.be/aidslab/ph ylogeography/tutorial/spread_tutorial.html . Originally this program is named "spread". However, there is just such a package inside Debian and thus a 'phy' for phylogeny was prepended. Package: svtools Description-md5: 0e1af3ce7283b30f537bf151c85ac7d0 Description-en: Utilities for daemontools and multilog This package provides some useful utilities to maintain supervised services and to handle multilog log files: . svdir: Find daemontools service directory. svinfo: Get infos about a supervised process. svinitd: init.d weapper for daemontools services. svinitd-create: Create an init.d-script for a supervices process. svsetup: Service setup tool for daemontools. mlcat: cat frontend for multilog files. mlhead: head frontend for multilog files. mltail: tail frontend for multilog files. Package: tiemu Description-md5: 1102e21f878c7b4ba0911b7e6e5634f0 Description-en: Texas Instruments calculators emulator (without GDB) TiEmu emulates Texas Instruments calculators TI-89/92/92+/V200PLT. . It is based on XTiger, the original TI emulator for Linux, which uses the 68k emulation core from UAE (The Ultimate Amiga Emulator). . You need to either dump the ROM of your calculator (you can do so with TiLP), or get a FLASH upgrade from Texas Instrument (see the software section concerning your calculator, then download the archive and extract the file) to use this emulator. There are *no* TI ROMs provided in this package, as they are copyrighted by Texas Instruments, Inc. . However, a free (as in speech) ROM is now provided with TiEmu, namely PedRom. Try it out! . This version includes a VTI-style assembly debugger. . Please note it exists another version (tiemu-gdb) not provided on Debian itself which includes a GDB-style assembly debugger for use with TIGCC and/or KTIGCC. Package: transcode Description-md5: cd4d718c8ee93ddc1511cad4a86d6f14 Description-en: Text console video-stream processing tool Transcode is a text console video-stream processing tool. It supports elementary video and audio frame transformations. Some example modules are included to enable import of MPEG-1/2, Digital Video, and other formats. It also includes export modules for writing to AVI files with DivX, OpenDivX, XviD, Digital Video or other codecs. Direct DVD transcoding is also supported. A set of tools is available to extract and decode the sources into raw video/audio streams for import and to enable post- processing of AVI files. Package: transcode-dbg Description-md5: 4fd8103a7214cbfa3249322b1b8852f3 Description-en: Text console video-stream processing tool - debugging symbols Transcode is a text console video-stream processing tool. It supports elementary video and audio frame transformations. Some example modules are included to enable import of MPEG-1/2, Digital Video, and other formats. It also includes export modules for writing to AVI files with DivX, OpenDivX, XviD, Digital Video or other codecs. Direct DVD transcoding is also supported. A set of tools is available to extract and decode the sources into raw video/audio streams for import and to enable post- processing of AVI files. . This package contains the debug symbols for the transcode programs. Package: transcode-doc Description-md5: d68c617738c311615d8753cab6a9fe40 Description-en: Text console video-stream processing tool (documentation) Transcode is a text console video-stream processing tool. It supports elementary video and audio frame transformations. Some example modules are included to enable import of MPEG-1/2, Digital Video, and other formats. It also includes export modules for writing to AVI files with DivX, OpenDivX, XviD, Digital Video or other codecs. Direct DVD transcoding is also supported. A set of tools is available to extract and decode the sources into raw video/audio streams for import and to enable post- processing of AVI files. . This package contains the documentation. Package: treeview Description-md5: ba1871fdfc7832e4ff41cecdd4a32563 Description-en: Java re-implementation of Michael Eisen's TreeView TreeView creates a matrix-like display of expression data, known as Eisen clustering. The original implementation was a Windows program named TreeView by Michael Eisen. This TreeView package, sometimes also referred to as jTreeView, was rewritten in Java under a free license. . Java TreeView is an extensible viewer for microarray data in PCL or CDT format. Package: videotrans Description-md5: e1f89ca2dddfd4e1fb8361b8e9ee4150 Description-en: DVD authoring utilities A collection of utilities and scripts designed to help with DVD authoring: * movie-to-dvd - convert video to MPEG2 + MP2 or AC3 * movie-title - combine video and title sequence into a menu * movie-make-title - create background video for DVD menu * movie-make-title-simple - create background image+audio for DVD menu * movie-rip-tv.com - gather information about TV series from tv.com * movie-rip-epg.data - convert EPG to .info for movie-title * movie-compare-dvd - verify if DVD was burned correctly Package: weirdx Description-md5: efd18efb16cda856c70bd010ee0ab87c Description-en: X server in Java A complete X server implementation in Java which can run standalone or as an applet. It supports remote X and (using libjsch-java) X forwarded over SSH. . Also includes a library for embedding WeirdX in other Java programs or Applets.